SpliceAid 2 splicing factor binding sites and related information

PROTEIN NAME	SITE	SCORE	PROTEIN NOTES	PMID REFERENCE	REFERENCE	ARTICLE NOTES	GENE/CONSTRUCT (Target RNA)	SPLICING ASSAY	BINDING ASSAY
9G8	ACACGACGAU	8	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	ACGAAUGAU	6	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	ACGAGACUA	4	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	ACGAGAGAA	8	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	ACGAGAGAC	10	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	ACGAGAGAU	10	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	ACGAGAUCA	4	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	ACGAUAGAA	6	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	ACGAUAGAC	8	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	ACGAUUGAC	6	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	ACGAUUGAU	6	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	ACUAGAGAC	8	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	AGACAACGAU	8	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	AGACAACGUU	6	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	AGACCACGCU	6	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	AGACGACGAA	8	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	AGACGACGAU	10	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	AGACGACGUU	8	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	AGACUACAAG	6	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	AGACUACACC	6	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	AGACUACAUA	4	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	AGACUACAUC	6	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	AGACUACGAC	10	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	AGACUACGAG	8	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	AGACUACGAU	10	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	AGACUACGCU	8	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	AGACUACGUU	8	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	AGACUUCGAU	6	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	AUACGACGAG	6	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	AUCCGACGAG	4	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	CAACGACGAG	4	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	CAGAGAGAC	6	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	CCGAGAUCA	2	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	CCGAGAUCU	4	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	CGACGAGGAC	6	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	CGACGAUGAC	6	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	CUACGACGAG	4	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	CUGAGAGAC	6	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	UAGAGAGAC	6	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	UCGAGAGAU	8	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	UCGAUUGAC	4	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	UGACGACGAA	6	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	UGACGACGAU	10	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
9G8	GGACGACGA	5	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10022858	Schaal TD, Maniatis T. (1999) Selection and characterization of pre-mRNA splicing enhancers: identification of novel SR protein-specific enhancer sequences. Mol Cell Biol. 19(3): 1705-1719.		Constructs of Drosophila dsx [40940] EX3 - INT3 - EX4 mutated by inserting 18nt randomized in EX4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa nuclear extracts. Winners are confirmed by in vitro splicing in HeLa S100 extracts.	SELEX winner confermed by immublotting in Hela nuclear extracts.
9G8	AAAGGACAAA	5	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10022858	Schaal TD, Maniatis T. (1999) Selection and characterization of pre-mRNA splicing enhancers: identification of novel SR protein-specific enhancer sequences. Mol Cell Biol. 19(3): 1705-1719.		Constructs of Drosophila dsx [40940] EX3 - INT3 - EX4 mutated by inserting 18nt randomized in EX4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa nuclear extracts. Winners are confirmed by in vitro splicing in HeLa S100 extracts.	SELEX winner confermed by immublotting in Hela nuclear extracts.
9G8	UCUUCA	5	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10022858	Schaal TD, Maniatis T. (1999) Selection and characterization of pre-mRNA splicing enhancers: identification of novel SR protein-specific enhancer sequences. Mol Cell Biol. 19(3): 1705-1719.		Constructs of Drosophila dsx [40940] EX3 - INT3 - EX4 mutated by inserting 18nt randomized in EX4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa nuclear extracts. Winners are confirmed by in vitro splicing in HeLa S100 extracts.	SELEX winner confermed by immublotting in Hela nuclear extracts.
9G8	UCUCCG	5	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10022858	Schaal TD, Maniatis T. (1999) Selection and characterization of pre-mRNA splicing enhancers: identification of novel SR protein-specific enhancer sequences. Mol Cell Biol. 19(3): 1705-1719.		Constructs of Drosophila dsx [40940] EX3 - INT3 - EX4 mutated by inserting 18nt randomized in EX4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa nuclear extracts. Winners are confirmed by in vitro splicing in HeLa S100 extracts.	SELEX winner confermed by immublotting in Hela nuclear extracts.
9G8	UGGACAA	5	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10022858	Schaal TD, Maniatis T. (1999) Selection and characterization of pre-mRNA splicing enhancers: identification of novel SR protein-specific enhancer sequences. Mol Cell Biol. 19(3): 1705-1719.		Constructs of Drosophila dsx [40940] EX3 - INT3 - EX4 mutated by inserting 18nt randomized in EX4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa nuclear extracts. Winners are confirmed by in vitro splicing in HeLa S100 extracts.	SELEX winner confermed by immublotting in Hela nuclear extracts.
9G8	GGAAGAAGAUAAAGAC	8	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	12826680	Galiana-Arnoux D, Lejeune F, Gesnel MC, Stevenin J, Breathnach R, Del Gatto-Konczak F. (2003) The CD44 alternative v9 exon contains a splicing enhancer responsive to the SR proteins 9G8, ASF/SF2, and SRp20. J Biol Chem. 278(35):32943-32953.		Construct of CD44 [960] EX8 - INT8 - EX9 - INT9 - EX10.	In vivo splicing in SVK14 and HEK293-EBNA cells.	UV crosslink, immunoprecipitation in HeLa S100 and nuclear extracts.
9G8	GACGACGAG	5	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	10523623	Bourgeois CF, Popielarz M, Hildwein G, Stevenin J. (1999) Identification of a bidirectional splicing enhancer: differential involvement of SR proteins in 5' or 3' splice site activation. Mol Cell Biol. 19(11):7347-7356.		Construct and variants of Adenovirus E1A unit.	in vitro splicing with Hela nuclear extracts, in vivo splicing in Hela cells, in vitro complementation assays.	UV crosslink, immunoprecipitation.
9G8	AGAGGAAGGCGA	7	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	11096110	Lejeune F, Cavaloc Y, Stevenin J. (2001) Alternative splicing of intron 3 of the serine/arginine-rich protein 9G8 gene. Identification of flanking exonic splicing enhancers and involvement of 9G8 as a trans-acting factor. J Biol Chem. 276(11):7850-7858.		Sequences deriving from SFRS7 [6432] and constructs of SFRS7 [6432] EX3 - INT3 - EX4.	In vitro splicing with HeLa extracts.	UV cross-linking, immunoprecipitation, complementation assay in HeLa extracts.
9G8	AGGAGCAGGGGACGAAG	10	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	11096110	Lejeune F, Cavaloc Y, Stevenin J. (2001) Alternative splicing of intron 3 of the serine/arginine-rich protein 9G8 gene. Identification of flanking exonic splicing enhancers and involvement of 9G8 as a trans-acting factor. J Biol Chem. 276(11):7850-7858.		Sequences deriving from SFRS7 [6432] and constructs of SFRS7 [6432] EX3 - INT3 - EX4.	In vitro splicing with HeLa extracts.	UV cross-linking, immunoprecipitation, complementation assay in HeLa extracts.
9G8	GAAGAAGAA	5	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	11096110	Lejeune F, Cavaloc Y, Stevenin J. (2001) Alternative splicing of intron 3 of the serine/arginine-rich protein 9G8 gene. Identification of flanking exonic splicing enhancers and involvement of 9G8 as a trans-acting factor. J Biol Chem. 276(11):7850-7858.		Sequences deriving from SFRS7 [6432] and constructs of SFRS7 [6432] EX3 - INT3 - EX4.	In vitro splicing with HeLa extracts.	UV cross-linking, immunoprecipitation, complementation assay in HeLa extracts.
9G8	CUAGCUCACGCAGCAUAUCUCACGCAUCAUG	2	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	11096110	Lejeune F, Cavaloc Y, Stevenin J. (2001) Alternative splicing of intron 3 of the serine/arginine-rich protein 9G8 gene. Identification of flanking exonic splicing enhancers and involvement of 9G8 as a trans-acting factor. J Biol Chem. 276(11):7850-7858.		Sequences deriving from SFRS7 [6432] and constructs of SFRS7 [6432] EX3 - INT3 - EX4.	In vitro splicing with HeLa extracts.	UV cross-linking, immunoprecipitation, complementation assay in HeLa extracts.
9G8	ACAACAAGAAGACGCGCAUCAU	2	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	11336712	Huang Y, Steitz JA. (2001) Splicing factors SRp20 and 9G8 promote the nucleocytoplasmic export of mRNA. Mol Cell. 7(4):899-905.		Sequences wt and mutated deriving from mouse Histone 2A		UV cross-linking and immunoprecipitation with HeLa NE
9G8	GGGAGGAAGAAAUAGAAGAUGCAGAAGAGG	5	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	16000324	Venables JP, Bourgeois CF, Dalgliesh C, Kister L, Stevenin J, Elliott DJ. (2005) Up-regulation of the ubiquitous alternative splicing factor Tra2beta causes inclusion of a germ cell-specific exon. Hum Mol Genet. 14(16):2289-22303.		Constructs of wt or mutated HBB [3043]_EX2 - HIPK3 [10114]_INT3 - HIPK3 [10114]_EX3bis - HIPK3 [10114]_INT3 - HBB [3043]_ EX3. Sequences deriving from HIPK3 [10114].	In vivo splicing in HEK293 cells.	Pulldown assay and western blot with HeLa NE
9G8	UCAACA	5	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	8769651	Lynch KW, Maniatis T. (1996) Assembly of specific SR protein complexes on distinct regulatory elements of the Drosophila doublesex splicing enhancer. Genes Dev. 10(16):2089-2101.		Sequences deriving from D. melanogaster dsx [40940].		UV-cross link, immunoprecipitation with HeLa extracts.
9G8	GACGACGAGGAGCAGCAG	8	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	11454855	Tian H, Kole R. (2001) Strong RNA splicing enhancers identified by a modified method of cycled selection interact with SR protein. J Biol Chem. 276(36):33833-33839.		Synthesized sequences and sequences deriving from S. cerevisiae URA3 [856692]. Constructs of URA3 [856692] EX1 - INT1 - EX2 - INT2 - EX3 (sequence inserted in EX2).	In vitro splicing with HeLa NE	Filter binding assay, UV cross-linking and immunoprecipitation with HeLa NE
9G8	GACGACUCAGCAG	4	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	11454855	Tian H, Kole R. (2001) Strong RNA splicing enhancers identified by a modified method of cycled selection interact with SR protein. J Biol Chem. 276(36):33833-33839.		Synthesized sequences and sequences deriving from S. cerevisiae URA3 [856692]. Constructs of URA3 [856692] EX1 - INT1 - EX2 - INT2 - EX3 (sequence inserted in EX2).	In vitro splicing with HeLa NE	Filter binding assay, UV cross-linking and immunoprecipitation with HeLa NE
9G8	CUCUUCAC	5	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	17036044	Hargous Y, Hautbergue GM, Tintaru AM, Skrisovska L, Golovanov AP, Stevenin J, Lian LY, Wilson SA, Allain FH. (2006) Molecular basis of RNA recognition and TAP binding by the SR proteins SRp20 and 9G8. EMBO J. 25(21):5126-5137.		Synthesized sequences		NMR spectroscopy
9G8	GGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCC	6	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
9G8	AAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACC	4	Gene Name and Synonymous: SFRS7, splicing factor arginine/serine-rich 7 35kDa, AAG3, HSSG1, RBM37, ZCRB2, ZCCHC20 The shuttling protein 9G8 binds TAP and can function as export factors (18364396).	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
CUG-BP1	UGUGU	-2	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	16938098	Marquis J, Paillard L, Audic Y, Cosson B, Danos O, Le Bec C, Osborne HB. (2006) CUG-BP1/CELF1 requires UGU-rich sequences for high-affinity binding. Biochem J. 400(2): 291-301.		Sequences of 35nt random for SELEX.		SELEX of 35nt random with recombinant protein. Surface plasmon resonance and EMSA.
CUG-BP1	UGUGUG	-3	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	16938098	Marquis J, Paillard L, Audic Y, Cosson B, Danos O, Le Bec C, Osborne HB. (2006) CUG-BP1/CELF1 requires UGU-rich sequences for high-affinity binding. Biochem J. 400(2): 291-301.		Sequences of 35nt random for SELEX.		SELEX of 35nt random with recombinant protein. Surface plasmon resonance and EMSA.
CUG-BP1	UGUGUGU	-4	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	16938098	Marquis J, Paillard L, Audic Y, Cosson B, Danos O, Le Bec C, Osborne HB. (2006) CUG-BP1/CELF1 requires UGU-rich sequences for high-affinity binding. Biochem J. 400(2): 291-301.		Sequences of 35nt random for SELEX.		SELEX of 35nt random with recombinant protein. Surface plasmon resonance and EMSA.
CUG-BP1	UGUGUGUG	-5	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	16938098	Marquis J, Paillard L, Audic Y, Cosson B, Danos O, Le Bec C, Osborne HB. (2006) CUG-BP1/CELF1 requires UGU-rich sequences for high-affinity binding. Biochem J. 400(2): 291-301.		Sequences of 35nt random for SELEX.		SELEX of 35nt random with recombinant protein. Surface plasmon resonance and EMSA.
CUG-BP1	UGUGUGUGU	-8	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	16938098	Marquis J, Paillard L, Audic Y, Cosson B, Danos O, Le Bec C, Osborne HB. (2006) CUG-BP1/CELF1 requires UGU-rich sequences for high-affinity binding. Biochem J. 400(2): 291-301.		Sequences of 35nt random for SELEX.		SELEX of 35nt random with recombinant protein. Surface plasmon resonance and EMSA.
CUG-BP1	UGUGUGUGUG	-8	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	16938098	Marquis J, Paillard L, Audic Y, Cosson B, Danos O, Le Bec C, Osborne HB. (2006) CUG-BP1/CELF1 requires UGU-rich sequences for high-affinity binding. Biochem J. 400(2): 291-301.		Sequences of 35nt random for SELEX.		SELEX of 35nt random with recombinant protein. Surface plasmon resonance and EMSA.
CUG-BP1	UGUGUGUGUGU	-8	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	16938098	Marquis J, Paillard L, Audic Y, Cosson B, Danos O, Le Bec C, Osborne HB. (2006) CUG-BP1/CELF1 requires UGU-rich sequences for high-affinity binding. Biochem J. 400(2): 291-301.		Sequences of 35nt random for SELEX.		SELEX of 35nt random with recombinant protein. Surface plasmon resonance and EMSA.
CUG-BP1	UGUGUUGUGUGU	-8	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	16938098	Marquis J, Paillard L, Audic Y, Cosson B, Danos O, Le Bec C, Osborne HB. (2006) CUG-BP1/CELF1 requires UGU-rich sequences for high-affinity binding. Biochem J. 400(2): 291-301.		Sequences of 35nt random for SELEX.		SELEX of 35nt random with recombinant protein. Surface plasmon resonance and EMSA.
CUG-BP1	UGUGUGUGUGUGUGU	-8	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	16938098	Marquis J, Paillard L, Audic Y, Cosson B, Danos O, Le Bec C, Osborne HB. (2006) CUG-BP1/CELF1 requires UGU-rich sequences for high-affinity binding. Biochem J. 400(2): 291-301.		Sequences of 35nt random for SELEX.		SELEX of 35nt random with recombinant protein. Surface plasmon resonance and EMSA.
CUG-BP1	UGUUUGU	-2	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	16938098	Marquis J, Paillard L, Audic Y, Cosson B, Danos O, Le Bec C, Osborne HB. (2006) CUG-BP1/CELF1 requires UGU-rich sequences for high-affinity binding. Biochem J. 400(2): 291-301.		Sequences of 35nt random for SELEX.		SELEX of 35nt random with recombinant protein. Surface plasmon resonance and EMSA.
CUG-BP1	CUGCUGCUGCUGCUGCUGCUGCUG	-5	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	8789448	Timchenko LT, Timchenko NA, Caskey CT, Roberts R. (1996) Novel proteins with binding specificity for DNA CTG repeats and RNA CUG repeats: implications for myotonic dystrophy. Hum Mol Genet. 5(1):115-121.	CUG-BP1 has no affinity to (CGG)8 repeats.	synthesized oligos		EMSA with HeLa whole cell extract.
CUG-BP1	UGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUG	-10	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	14722159	Kino Y, Mori D, Oma Y, Takeshita Y, Sasagawa N, Ishiura S. (2004) Muscleblind protein, MBNL1/EXP, binds specifically to CHHG repeats. Hum. Mol. Genet. 13:495–507.		Synthesized sequences.		Yeast three-hybrid assay confirmed by EMSA using purified recombinant protein. EMSA with competing probes.
CUG-BP1	CCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCG	-4	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	14722159	Kino Y, Mori D, Oma Y, Takeshita Y, Sasagawa N, Ishiura S. (2004) Muscleblind protein, MBNL1/EXP, binds specifically to CHHG repeats. Hum. Mol. Genet. 13:495–507.		Synthesized sequences.		Yeast three-hybrid assay confirmed by EMSA using purified recombinant protein. EMSA with competing probes.
CUG-BP1	UCUGUCUGUCUGUCUGUCUGUCUGUCUGUCUGUCUGUCUGUCUGUCUGUCUGUCUGUCUGUCUGUCUGUCUGUCUGUCUGUCUGUCUGUCUGUCUGUCUGUCUGUCUGUCUGUCUGUCUGUCUGUCUG	-8	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	14722159	Kino Y, Mori D, Oma Y, Takeshita Y, Sasagawa N, Ishiura S. (2004) Muscleblind protein, MBNL1/EXP, binds specifically to CHHG repeats. Hum. Mol. Genet. 13:495–507.		Synthesized sequences.		Yeast three-hybrid assay confirmed by EMSA using purified recombinant protein. EMSA with competing probes.
CUG-BP1	CAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGA	-4	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	14722159	Kino Y, Mori D, Oma Y, Takeshita Y, Sasagawa N, Ishiura S. (2004) Muscleblind protein, MBNL1/EXP, binds specifically to CHHG repeats. Hum. Mol. Genet. 13:495–507.		Synthesized sequences.		Yeast three-hybrid assay confirmed by EMSA using purified recombinant protein. EMSA with competing probes.
CUG-BP1	UCCGUCCGUCCGUCCGUCCGUCCGUCCGUCCGUCCGUCCGUCCGUCCGUCCGUCCGUCCGUCCGUCCGUCCGUCCGUCCGUCCGUCCGUCCGUCCGUCCGUCCGUCCG	-8	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	14722159	Kino Y, Mori D, Oma Y, Takeshita Y, Sasagawa N, Ishiura S. (2004) Muscleblind protein, MBNL1/EXP, binds specifically to CHHG repeats. Hum. Mol. Genet. 13:495–507.		Synthesized sequences.		Yeast three-hybrid assay confirmed by EMSA using purified recombinant protein. EMSA with competing probes.
CUG-BP1	CGGACGGACGGACGGACGGACGGACGGACGGACGGACGGACGGACGGACGGACGGACGGACGGACGGACGGACGGACGGACGGACGGACGGACGGACGGACGGACGGACGGACGGACGGA	-4	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	14722159	Kino Y, Mori D, Oma Y, Takeshita Y, Sasagawa N, Ishiura S. (2004) Muscleblind protein, MBNL1/EXP, binds specifically to CHHG repeats. Hum. Mol. Genet. 13:495–507.		Synthesized sequences.		Yeast three-hybrid assay confirmed by EMSA using purified recombinant protein. EMSA with competing probes.
CUG-BP1	CUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUG	-2	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	14722159	Kino Y, Mori D, Oma Y, Takeshita Y, Sasagawa N, Ishiura S. (2004) Muscleblind protein, MBNL1/EXP, binds specifically to CHHG repeats. Hum. Mol. Genet. 13:495–507.		Synthesized sequences.		Yeast three-hybrid assay confirmed by EMSA using purified recombinant protein. EMSA with competing probes.
CUG-BP1	CCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCG	-4	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	14722159	Kino Y, Mori D, Oma Y, Takeshita Y, Sasagawa N, Ishiura S. (2004) Muscleblind protein, MBNL1/EXP, binds specifically to CHHG repeats. Hum. Mol. Genet. 13:495–507.		Synthesized sequences.		Yeast three-hybrid assay confirmed by EMSA using purified recombinant protein. EMSA with competing probes.
CUG-BP1	UAUGUAUGUAUGUAUGUAUGUAUGUAUG	-6	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	14722159	Kino Y, Mori D, Oma Y, Takeshita Y, Sasagawa N, Ishiura S. (2004) Muscleblind protein, MBNL1/EXP, binds specifically to CHHG repeats. Hum. Mol. Genet. 13:495–507.		Synthesized sequences.		Yeast three-hybrid assay confirmed by EMSA using purified recombinant protein. EMSA with competing probes.
CUG-BP1	CAUGCAUGCAUGCAUGCAUGCAUGCAUG	-4	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	14722159	Kino Y, Mori D, Oma Y, Takeshita Y, Sasagawa N, Ishiura S. (2004) Muscleblind protein, MBNL1/EXP, binds specifically to CHHG repeats. Hum. Mol. Genet. 13:495–507.		Synthesized sequences.		Yeast three-hybrid assay confirmed by EMSA using purified recombinant protein. EMSA with competing probes.
CUG-BP1	CGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGG	-2	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	14722159	Kino Y, Mori D, Oma Y, Takeshita Y, Sasagawa N, Ishiura S. (2004) Muscleblind protein, MBNL1/EXP, binds specifically to CHHG repeats. Hum. Mol. Genet. 13:495–507.		Synthesized sequences.		Yeast three-hybrid assay confirmed by EMSA using purified recombinant protein. EMSA with competing probes.
CUG-BP1	CCUGCCUGCCUGCCUGCCUGCCUGCCUG	-2	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	14722159	Kino Y, Mori D, Oma Y, Takeshita Y, Sasagawa N, Ishiura S. (2004) Muscleblind protein, MBNL1/EXP, binds specifically to CHHG repeats. Hum. Mol. Genet. 13:495–507.		Synthesized sequences.		Yeast three-hybrid assay confirmed by EMSA using purified recombinant protein. EMSA with competing probes.
CUG-BP1	CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG	-2	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	14722159	Kino Y, Mori D, Oma Y, Takeshita Y, Sasagawa N, Ishiura S. (2004) Muscleblind protein, MBNL1/EXP, binds specifically to CHHG repeats. Hum. Mol. Genet. 13:495–507.		Synthesized sequences.		Yeast three-hybrid assay confirmed by EMSA using purified recombinant protein. EMSA with competing probes.
CUG-BP1	CUGUCUG	-5	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	12649496	Gromak N, Matlin AJ, Cooper TA, Smith CW. (2003) Antagonistic regulation of alpha-actinin alternative splicing by CELF proteins and polypyrimidine tract binding protein. RNA. 9(4):443-456.		Construct of rat Actn1 [81634] EX_NM - INT	In vitro splicing with HeLa nuclear extracts.	UV cross-link with recombinant protein and with HeLa nuclear extract containing increasing protein concentrations. Mutation analysis.
CUG-BP1	CUGCUGCUGCUGCUGCUGCUGCUGCUGCUG	-10	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	8912635	Bhagavati S, Ghatpande A, Leung B. (1996) Identification of two nuclear proteins which bind to RNA CUG repeats: significance for myotonic dystrophy. Biochem Biophys Res Commun. 228(1):55-62.		Synthesized sequences		EMSA, UV-crosslink, protein purification
CUG-BP1	CUCUCUCUCUCUCUCUCUCUCUCUCUCUCU	-8	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	8912635	Bhagavati S, Ghatpande A, Leung B. (1996) Identification of two nuclear proteins which bind to RNA CUG repeats: significance for myotonic dystrophy. Biochem Biophys Res Commun. 228(1):55-62.		Synthesized sequences		EMSA, UV-crosslink, protein purification
CUG-BP1	UUUUUUUGUUGUGUUUUUUCCUU	-8	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	8912635	Bhagavati S, Ghatpande A, Leung B. (1996) Identification of two nuclear proteins which bind to RNA CUG repeats: significance for myotonic dystrophy. Biochem Biophys Res Commun. 228(1):55-62.		Synthesized sequences		EMSA, UV-crosslink, protein purification
CUG-BP1	UGUGUGUGUGUGUGUGUGUGUGUUUUU	-4	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	20631008	Dujardin G, Buratti E, Charlet-Berguerand N, Martins de Araujo M, Mbopda A, Le Jossic-Corcos C, Pagani F, Ferec C, Corcos L. (2010) CELF proteins regulate CFTR pre-mRNA splicing: essential role of the divergent domain of ETR-3. Nucleic Acids Res. 38(20):7273-7285.		Constructs of wt and mutated CFTR [1080] INT8 - EX9 - INT9	In vivo splicing in HeLa, HGT-1, HCT116	EMSA with recombinant protein. siRNA.
CUG-BP1	UGUGUGUGUGUGUGUGUGUGUGUGUUUUU	-6	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	20631008	Dujardin G, Buratti E, Charlet-Berguerand N, Martins de Araujo M, Mbopda A, Le Jossic-Corcos C, Pagani F, Ferec C, Corcos L. (2010) CELF proteins regulate CFTR pre-mRNA splicing: essential role of the divergent domain of ETR-3. Nucleic Acids Res. 38(20):7273-7285.		Constructs of wt and mutated CFTR [1080] INT8 - EX9 - INT9	In vivo splicing in HeLa, HGT-1, HCT116	EMSA with recombinant protein. siRNA.
CUG-BP1	UGUGUGUGUGUGUGUGUGUGUGUGUGUUUUU	-8	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	20631008	Dujardin G, Buratti E, Charlet-Berguerand N, Martins de Araujo M, Mbopda A, Le Jossic-Corcos C, Pagani F, Ferec C, Corcos L. (2010) CELF proteins regulate CFTR pre-mRNA splicing: essential role of the divergent domain of ETR-3. Nucleic Acids Res. 38(20):7273-7285.		Constructs of wt and mutated CFTR [1080] INT8 - EX9 - INT9	In vivo splicing in HeLa, HGT-1, HCT116	EMSA with recombinant protein. siRNA.
CUG-BP1	UGUGUGUGUGUGUGUGUGUGUGUGUGUGUG	-10	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	18039683	Mori D, Sasagawa N, Kino Y, Ishiura S. (2008) Quantitative analysis of CUG-BP1 binding to RNA repeats. J Biochem. 143(3):377-383.		Synthesized sequences		Surface plasmon resonance (SPR) with recombinant protein.
CUG-BP1	UGUGUGUGUGUGUAUGUGUGUGUGUGUGUG	-9	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	18039683	Mori D, Sasagawa N, Kino Y, Ishiura S. (2008) Quantitative analysis of CUG-BP1 binding to RNA repeats. J Biochem. 143(3):377-383.		Synthesized sequences		Surface plasmon resonance (SPR) with recombinant protein.
CUG-BP1	UAUGUAUGUAUGUAUGUAUGUAUGUAUGUA	-5	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	18039683	Mori D, Sasagawa N, Kino Y, Ishiura S. (2008) Quantitative analysis of CUG-BP1 binding to RNA repeats. J Biochem. 143(3):377-383.		Synthesized sequences		Surface plasmon resonance (SPR) with recombinant protein.
CUG-BP1	GUUGGUUGGUUGGUUGGUUGGUUGGUUGGU	-3	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	18039683	Mori D, Sasagawa N, Kino Y, Ishiura S. (2008) Quantitative analysis of CUG-BP1 binding to RNA repeats. J Biochem. 143(3):377-383.		Synthesized sequences		Surface plasmon resonance (SPR) with recombinant protein.
CUG-BP1	UGGUGGUGGUGGUGGUGGUGGUGGUGGUGG	-3	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	18039683	Mori D, Sasagawa N, Kino Y, Ishiura S. (2008) Quantitative analysis of CUG-BP1 binding to RNA repeats. J Biochem. 143(3):377-383.		Synthesized sequences		Surface plasmon resonance (SPR) with recombinant protein.
CUG-BP1	UUGUUGUUGUUGUUGUUGUUGUUGUUGUUG	-3	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	18039683	Mori D, Sasagawa N, Kino Y, Ishiura S. (2008) Quantitative analysis of CUG-BP1 binding to RNA repeats. J Biochem. 143(3):377-383.		Synthesized sequences		Surface plasmon resonance (SPR) with recombinant protein.
CUG-BP1	CUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUG	-1	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	18039683	Mori D, Sasagawa N, Kino Y, Ishiura S. (2008) Quantitative analysis of CUG-BP1 binding to RNA repeats. J Biochem. 143(3):377-383.		Synthesized sequences		Surface plasmon resonance (SPR) with recombinant protein.
CUG-BP1	UUUCUUGUUUGUUUGUUUGGGU	-5	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	18243120	Vlasova IA, Tahoe NM, Fan D, Larsson O, Rattenbacher B, Sternjohn JR, Vasdewani J, Karypis G, Reilly CS, Bitterman PB, Bohjanen PR. (2008) Conserved GU-rich elements mediate mRNA decay by binding to CUG-binding protein 1. Mol Cell. 29(2):263-270.		Sequences deriving from wt and mutated JUN [3725], JUNB [3726], TNFRSF1B [7133].		Mutagenesis, EMSA with cytoplasmic extracts and supershift, UV cross-linking, siRNA-knockdown in primary human T cells and HeLa.
CUG-BP1	GUGUUUGUGUUUGUGUGUGUUUGUU	-5	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	18243120	Vlasova IA, Tahoe NM, Fan D, Larsson O, Rattenbacher B, Sternjohn JR, Vasdewani J, Karypis G, Reilly CS, Bitterman PB, Bohjanen PR. (2008) Conserved GU-rich elements mediate mRNA decay by binding to CUG-binding protein 1. Mol Cell. 29(2):263-270.		Sequences deriving from wt and mutated JUN [3725], JUNB [3726], TNFRSF1B [7133].		Mutagenesis, EMSA with cytoplasmic extracts and supershift, UV cross-linking, siRNA-knockdown in primary human T cells and HeLa.
CUG-BP1	GUUUGUUUGUUUGUUUGUUUGUUU	-5	Gene Name and Synonymous: CUGBP1, CUG triplet repeat RNA binding protein 1, CUGBP, NAB50, CUG-BP, hNab50, BRUNOL2. Note that CUGBP1 induces exon 5 inclusion in cTNT gene (PMID:9563950), induces exon 11 exclusion in IR gene (PMID:11528389), induces intron 2 retention in CIC-1 gene (PMID:12150906).	18243120	Vlasova IA, Tahoe NM, Fan D, Larsson O, Rattenbacher B, Sternjohn JR, Vasdewani J, Karypis G, Reilly CS, Bitterman PB, Bohjanen PR. (2008) Conserved GU-rich elements mediate mRNA decay by binding to CUG-binding protein 1. Mol Cell. 29(2):263-270.		Sequences deriving from wt and mutated JUN [3725], JUNB [3726], TNFRSF1B [7133].		Mutagenesis, EMSA with cytoplasmic extracts and supershift, UV cross-linking, siRNA-knockdown in primary human T cells and HeLa.
DAZAP1	UUUUUUU	-7	Gene Name and Synonymous: DAZAP1, DAZ associated protein 1.	10857750	Tsui S, Dai T, Roettger S, Schempp W, Salido EC, Yen PH. (2000) Identification of two novel proteins that interact with germ-cell-specific RNA-binding proteins DAZ and DAZL1. Genomics. 65(3):266-273.	DAZAP1 has no affinity to poly (C).	Homopolymers		In vitro RNA-binding assay of homopolymers and SDS-PAGE with recombinant protein.
DAZAP1	GGGGGGG	-7	Gene Name and Synonymous: DAZAP1, DAZ associated protein 1.	10857750	Tsui S, Dai T, Roettger S, Schempp W, Salido EC, Yen PH. (2000) Identification of two novel proteins that interact with germ-cell-specific RNA-binding proteins DAZ and DAZL1. Genomics. 65(3):266-273.	DAZAP1 has no affinity to poly (C).	Homopolymers		In vitro RNA-binding assay of homopolymers and SDS-PAGE with recombinant protein.
DAZAP1	AAAAAAA	-3	Gene Name and Synonymous: DAZAP1, DAZ associated protein 1.	10857750	Tsui S, Dai T, Roettger S, Schempp W, Salido EC, Yen PH. (2000) Identification of two novel proteins that interact with germ-cell-specific RNA-binding proteins DAZ and DAZL1. Genomics. 65(3):266-273.	DAZAP1 has no affinity to poly (C).	Homopolymers		In vitro RNA-binding assay of homopolymers and SDS-PAGE with recombinant protein.
DAZAP1	AGAAC	-5	Gene Name and Synonymous: DAZAP1, DAZ associated protein 1.	18503770	Skoko N, Baralle M, Buratti E, Baralle FE. (2008) The pathological splicing mutation c.6792C>G in NF1 exon 37 causes a change of tenancy between antagonistic splicing factors. FEBS Lett. 582(15):2231-2236.		Constructs spanning from NF1 [4763] EX34 to EX38 for in vivo splicing. Sequences of NF1 EX37.	In vivo splicing in HeLa, siRNA.	UV crosslink, EMSA, and pull-down assays with HeLa nuclear extracts.
DAZAP1	UUAGACUCUCCUUUUGGAUACCUAGAUGUUUUAACA	-5	Gene Name and Synonymous: DAZAP1, DAZ associated protein 1.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
DAZAP1	UUAGACUCUCCUUUUGCAUACCUAGAUGUUUUAACA	-5	Gene Name and Synonymous: DAZAP1, DAZ associated protein 1.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
DAZAP1	UUAGACUCUCCUUUUGGAUUCCUAGAUGUUUUAACA	-5	Gene Name and Synonymous: DAZAP1, DAZ associated protein 1.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
DAZAP1	UUAGACUCCCCUUUUGGAUACCUAGAUGUUUUAACA	-5	Gene Name and Synonymous: DAZAP1, DAZ associated protein 1.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
DAZAP1	UUAGACUCUCCUUUUGGGUACCUAGAUGUUUUAACA	-5	Gene Name and Synonymous: DAZAP1, DAZ associated protein 1.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
DAZAP1	UUAGACUCUCCUUUUGGAUAUCUAGAUGUUUUAACA	-5	Gene Name and Synonymous: DAZAP1, DAZ associated protein 1.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
DAZAP1	UGCAGAUGCUUAGUUUGUGU	-8	Gene Name and Synonymous: DAZAP1, DAZ associated protein 1.	18391021	Goina E, Skoko N, Pagani F. (2008) Binding of DAZAP1 and hnRNPA1/A2 to an exonic splicing silencer in a natural BRCA1 exon 18 mutant. Mol Cell Biol. 28(11):3850-3860.		Sequences deriving from FN1 [2335] and BRCA1 [672]. Constructs of wt and mutant BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19.	In vivo splicing in HeLa.	Pulldown assay, western blot with HeLa NE and EMSA with recombinant protein. siRNA.
DAZAP1	UGCAGAUGGUUAGUUUGUGU	-10	Gene Name and Synonymous: DAZAP1, DAZ associated protein 1.	18391021	Goina E, Skoko N, Pagani F. (2008) Binding of DAZAP1 and hnRNPA1/A2 to an exonic splicing silencer in a natural BRCA1 exon 18 mutant. Mol Cell Biol. 28(11):3850-3860.		Sequences deriving from FN1 [2335] and BRCA1 [672]. Constructs of wt and mutant BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19.	In vivo splicing in HeLa.	Pulldown assay, western blot with HeLa NE and EMSA with recombinant protein. siRNA.
DAZAP1	AGAUAU	8	Gene Name and Synonymous: DAZAP1, DAZ associated protein 1.	24452013	Choudhury R, Roy SG, Tsai YS, Tripathy A, Graves LM, Wang Z. (2014) The splicing activator DAZAP1 integrates splicing control into MEK/Erk-regulated cell proliferation and migration. Nat Commun. 5:3078.		Synthetic sequences. Construct of Chinese hamster Dhfr [100689028] GFP - INT1 - EX2 - INT2 - GFP where INT2 contains a MS2 hairpin.	In vivo splicing in HEK-293T using MS2-DAZAP1 fusion proteins.	RNA affinity chromatography and SPR analysis with recombinant protein.
DAZAP1	AAUUUA	8	Gene Name and Synonymous: DAZAP1, DAZ associated protein 1.	24452013	Choudhury R, Roy SG, Tsai YS, Tripathy A, Graves LM, Wang Z. (2014) The splicing activator DAZAP1 integrates splicing control into MEK/Erk-regulated cell proliferation and migration. Nat Commun. 5:3078.		Synthetic sequences. Construct of Chinese hamster Dhfr [100689028] GFP - INT1 - EX2 - INT2 - GFP where INT2 contains a MS2 hairpin.	In vivo splicing in HEK-293T using MS2-DAZAP1 fusion proteins.	RNA affinity chromatography and SPR analysis with recombinant protein.
DAZAP1	AGUAGG	5	Gene Name and Synonymous: DAZAP1, DAZ associated protein 1.	24452013	Choudhury R, Roy SG, Tsai YS, Tripathy A, Graves LM, Wang Z. (2014) The splicing activator DAZAP1 integrates splicing control into MEK/Erk-regulated cell proliferation and migration. Nat Commun. 5:3078.		Synthetic sequences. Construct of Chinese hamster Dhfr [100689028] GFP - INT1 - EX2 - INT2 - GFP where INT2 contains a MS2 hairpin.	In vivo splicing in HEK-293T using MS2-DAZAP1 fusion proteins.	RNA affinity chromatography and SPR analysis with recombinant protein.
DAZAP1	GUAACG	8	Gene Name and Synonymous: DAZAP1, DAZ associated protein 1.	24452013	Choudhury R, Roy SG, Tsai YS, Tripathy A, Graves LM, Wang Z. (2014) The splicing activator DAZAP1 integrates splicing control into MEK/Erk-regulated cell proliferation and migration. Nat Commun. 5:3078.		Synthetic sequences. Construct of Chinese hamster Dhfr [100689028] GFP - INT1 - EX2 - INT2 - GFP where INT2 contains a MS2 hairpin.	In vivo splicing in HEK-293T using MS2-DAZAP1 fusion proteins.	RNA affinity chromatography and SPR analysis with recombinant protein.
DAZAP1	GGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCC	-6	Gene Name and Synonymous: DAZAP1, DAZ associated protein 1.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
DAZAP1	AAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACC	-4	Gene Name and Synonymous: DAZAP1, DAZ associated protein 1.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
ESRP1	GUGUGGUGAUGGGCCUGCAGAGGUGAGCUGGCCGGUGUCUCUC	5	Gene Name and Synonymous: ESRP1, epithelial splicing regulatory protein 1, RBM35A, RMB35A, FLJ20171 It promotes exon inclusion or exclusion depending on epithelial or mesenchymal cells.	19285943	Warzecha CC, Sato TK, Nabet B, Hogenesch JB, Carstens RP. (2009) ESRP1 and ESRP2 are epithelial cell-type-specific regulators of FGFR2 splicing. Mol Cell. 33(5):591-601.		Sequences deriving from wt and mutated rat Fgfr2 [25022].	In vivo splicing in PNT2.	Pull-down and immunoblotting with KATO III NE
ESRP1	AGGGAU	5	Gene Name and Synonymous: ESRP1, epithelial splicing regulatory protein 1, RBM35A, RMB35A, FLJ20171 It promotes exon inclusion or exclusion depending on epithelial or mesenchymal cells.	20526337	Dominguez C, Fisette JF, Chabot B, Allain FH. (2010) Structural basis of G-tract recognition and encaging by hnRNP F quasi-RRMs. Nat Struct Mol Biol. 17(7):853-861.		Synthesized sequences. Constructs of wt and mutant BCL2L1 [598] EX2 - INT2 - EX3.	In vitro splicing assays in HeLa nuclear extracts.	NMR spectroscopy. In vitro splicing assays in HeLa nuclear extracts with increasing amount of splicing factor.
ESRP2	GUGUGGUGAUGGGCCUGCAGAGGUGAGCUGGCCGGUGUCUCUC	5	Gene Name and Synonymous: ESRP2, epithelial splicing regulatory protein 2, RBM35B, FLJ21918, FLJ22248 It promotes exon inclusion or exclusion depending on epithelial or mesenchymal cells.	19285943	Warzecha CC, Sato TK, Nabet B, Hogenesch JB, Carstens RP. (2009) ESRP1 and ESRP2 are epithelial cell-type-specific regulators of FGFR2 splicing. Mol Cell. 33(5):591-601.		Sequences deriving from wt and mutated rat Fgfr2 [25022].	In vivo splicing in PNT2.	Pull-down and immunoblotting with KATO III NE
ETR-3	AUGUG	7	Gene Name and Synonymous: CUGBP2, CUG triplet repeat RNA binding protein 2, NAPOR, BRUNOL3. Note that ETR-3 induces exon 5 inclusion in cTNT gene (PMID:11931771), induces exon 9 inclusion in CFTR gene (PMID:15657417), promotes selectively the exclusion of Tau exon 2 (PMID:16862542).	15657417	Faustino NA, Cooper TA. (2005) Identification of putative new splicing targets for ETR-3 using sequences identified by systematic evolution of ligands by exponential enrichment. Mol Cell Biol. 25 (3): 879-887.		Sequences of 20nt random for SELEX.		SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA.
ETR-3	AUGUU	8	Gene Name and Synonymous: CUGBP2, CUG triplet repeat RNA binding protein 2, NAPOR, BRUNOL3. Note that ETR-3 induces exon 5 inclusion in cTNT gene (PMID:11931771), induces exon 9 inclusion in CFTR gene (PMID:15657417), promotes selectively the exclusion of Tau exon 2 (PMID:16862542).	15657417	Faustino NA, Cooper TA. (2005) Identification of putative new splicing targets for ETR-3 using sequences identified by systematic evolution of ligands by exponential enrichment. Mol Cell Biol. 25 (3): 879-887.		Sequences of 20nt random for SELEX.		SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA.
ETR-3	CGUGU	6	Gene Name and Synonymous: CUGBP2, CUG triplet repeat RNA binding protein 2, NAPOR, BRUNOL3. Note that ETR-3 induces exon 5 inclusion in cTNT gene (PMID:11931771), induces exon 9 inclusion in CFTR gene (PMID:15657417), promotes selectively the exclusion of Tau exon 2 (PMID:16862542).	15657417	Faustino NA, Cooper TA. (2005) Identification of putative new splicing targets for ETR-3 using sequences identified by systematic evolution of ligands by exponential enrichment. Mol Cell Biol. 25 (3): 879-887.		Sequences of 20nt random for SELEX.		SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA.
ETR-3	GUCUGU	4	Gene Name and Synonymous: CUGBP2, CUG triplet repeat RNA binding protein 2, NAPOR, BRUNOL3. Note that ETR-3 induces exon 5 inclusion in cTNT gene (PMID:11931771), induces exon 9 inclusion in CFTR gene (PMID:15657417), promotes selectively the exclusion of Tau exon 2 (PMID:16862542).	15657417	Faustino NA, Cooper TA. (2005) Identification of putative new splicing targets for ETR-3 using sequences identified by systematic evolution of ligands by exponential enrichment. Mol Cell Biol. 25 (3): 879-887.		Sequences of 20nt random for SELEX.		SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA.
ETR-3	GUGUG	8	Gene Name and Synonymous: CUGBP2, CUG triplet repeat RNA binding protein 2, NAPOR, BRUNOL3. Note that ETR-3 induces exon 5 inclusion in cTNT gene (PMID:11931771), induces exon 9 inclusion in CFTR gene (PMID:15657417), promotes selectively the exclusion of Tau exon 2 (PMID:16862542).	15657417	Faustino NA, Cooper TA. (2005) Identification of putative new splicing targets for ETR-3 using sequences identified by systematic evolution of ligands by exponential enrichment. Mol Cell Biol. 25 (3): 879-887.		Sequences of 20nt random for SELEX.		SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA.
ETR-3	GUUGU	8	Gene Name and Synonymous: CUGBP2, CUG triplet repeat RNA binding protein 2, NAPOR, BRUNOL3. Note that ETR-3 induces exon 5 inclusion in cTNT gene (PMID:11931771), induces exon 9 inclusion in CFTR gene (PMID:15657417), promotes selectively the exclusion of Tau exon 2 (PMID:16862542).	15657417	Faustino NA, Cooper TA. (2005) Identification of putative new splicing targets for ETR-3 using sequences identified by systematic evolution of ligands by exponential enrichment. Mol Cell Biol. 25 (3): 879-887.		Sequences of 20nt random for SELEX.		SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA.
ETR-3	UAUGU	9	Gene Name and Synonymous: CUGBP2, CUG triplet repeat RNA binding protein 2, NAPOR, BRUNOL3. Note that ETR-3 induces exon 5 inclusion in cTNT gene (PMID:11931771), induces exon 9 inclusion in CFTR gene (PMID:15657417), promotes selectively the exclusion of Tau exon 2 (PMID:16862542).	15657417	Faustino NA, Cooper TA. (2005) Identification of putative new splicing targets for ETR-3 using sequences identified by systematic evolution of ligands by exponential enrichment. Mol Cell Biol. 25 (3): 879-887.		Sequences of 20nt random for SELEX.		SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA.
ETR-3	UGUGU	7	Gene Name and Synonymous: CUGBP2, CUG triplet repeat RNA binding protein 2, NAPOR, BRUNOL3. Note that ETR-3 induces exon 5 inclusion in cTNT gene (PMID:11931771), induces exon 9 inclusion in CFTR gene (PMID:15657417), promotes selectively the exclusion of Tau exon 2 (PMID:16862542).	15657417	Faustino NA, Cooper TA. (2005) Identification of putative new splicing targets for ETR-3 using sequences identified by systematic evolution of ligands by exponential enrichment. Mol Cell Biol. 25 (3): 879-887.		Sequences of 20nt random for SELEX.		SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA.
ETR-3	UGUUC	6	Gene Name and Synonymous: CUGBP2, CUG triplet repeat RNA binding protein 2, NAPOR, BRUNOL3. Note that ETR-3 induces exon 5 inclusion in cTNT gene (PMID:11931771), induces exon 9 inclusion in CFTR gene (PMID:15657417), promotes selectively the exclusion of Tau exon 2 (PMID:16862542).	15657417	Faustino NA, Cooper TA. (2005) Identification of putative new splicing targets for ETR-3 using sequences identified by systematic evolution of ligands by exponential enrichment. Mol Cell Biol. 25 (3): 879-887.		Sequences of 20nt random for SELEX.		SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA.
ETR-3	UGUUG	7	Gene Name and Synonymous: CUGBP2, CUG triplet repeat RNA binding protein 2, NAPOR, BRUNOL3. Note that ETR-3 induces exon 5 inclusion in cTNT gene (PMID:11931771), induces exon 9 inclusion in CFTR gene (PMID:15657417), promotes selectively the exclusion of Tau exon 2 (PMID:16862542).	15657417	Faustino NA, Cooper TA. (2005) Identification of putative new splicing targets for ETR-3 using sequences identified by systematic evolution of ligands by exponential enrichment. Mol Cell Biol. 25 (3): 879-887.		Sequences of 20nt random for SELEX.		SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA.
ETR-3	UGUUU	6	Gene Name and Synonymous: CUGBP2, CUG triplet repeat RNA binding protein 2, NAPOR, BRUNOL3. Note that ETR-3 induces exon 5 inclusion in cTNT gene (PMID:11931771), induces exon 9 inclusion in CFTR gene (PMID:15657417), promotes selectively the exclusion of Tau exon 2 (PMID:16862542).	15657417	Faustino NA, Cooper TA. (2005) Identification of putative new splicing targets for ETR-3 using sequences identified by systematic evolution of ligands by exponential enrichment. Mol Cell Biol. 25 (3): 879-887.		Sequences of 20nt random for SELEX.		SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA.
ETR-3	UUGUU	6	Gene Name and Synonymous: CUGBP2, CUG triplet repeat RNA binding protein 2, NAPOR, BRUNOL3. Note that ETR-3 induces exon 5 inclusion in cTNT gene (PMID:11931771), induces exon 9 inclusion in CFTR gene (PMID:15657417), promotes selectively the exclusion of Tau exon 2 (PMID:16862542).	15657417	Faustino NA, Cooper TA. (2005) Identification of putative new splicing targets for ETR-3 using sequences identified by systematic evolution of ligands by exponential enrichment. Mol Cell Biol. 25 (3): 879-887.		Sequences of 20nt random for SELEX.		SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA.
ETR-3	CAUCG	2	Gene Name and Synonymous: CUGBP2, CUG triplet repeat RNA binding protein 2, NAPOR, BRUNOL3. Note that ETR-3 induces exon 5 inclusion in cTNT gene (PMID:11931771), induces exon 9 inclusion in CFTR gene (PMID:15657417), promotes selectively the exclusion of Tau exon 2 (PMID:16862542).	15657417	Faustino NA, Cooper TA. (2005) Identification of putative new splicing targets for ETR-3 using sequences identified by systematic evolution of ligands by exponential enrichment. Mol Cell Biol. 25 (3): 879-887.		Sequences of 20nt random for SELEX.		SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA.
ETR-3	CUGCUGCUGCUGCUGCUGCUGCUG	5	Gene Name and Synonymous: CUGBP2, CUG triplet repeat RNA binding protein 2, NAPOR, BRUNOL3. Note that ETR-3 induces exon 5 inclusion in cTNT gene (PMID:11931771), induces exon 9 inclusion in CFTR gene (PMID:15657417), promotes selectively the exclusion of Tau exon 2 (PMID:16862542).	8948631	Timchenko LT, Miller JW, Timchenko NA, DeVore DR, Datar KV, Lin L, Roberts R, Caskey CT, Swanson MS. (1996) Identification of a (CUG)n triplet repeat RNA-binding protein and its expression in myotonic dystrophy. Nucleic Acids Res. 24(22): 4407-4414.		Synthesized sequences.		Purification of HeLa extract by DEAE chromatography and detection by bandshift/supershift analysis.
ETR-3	GUGUGU	7	Gene Name and Synonymous: CUGBP2, CUG triplet repeat RNA binding protein 2, NAPOR, BRUNOL3. Note that ETR-3 induces exon 5 inclusion in cTNT gene (PMID:11931771), induces exon 9 inclusion in CFTR gene (PMID:15657417), promotes selectively the exclusion of Tau exon 2 (PMID:16862542).	15657417	Faustino NA, Cooper TA. (2005) Identification of putative new splicing targets for ETR-3 using sequences identified by systematic evolution of ligands by exponential enrichment. Mol Cell Biol. 25 (3): 879-887.		Sequences of 20nt random for SELEX.		SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA.
ETR-3	AUGUGU	7	Gene Name and Synonymous: CUGBP2, CUG triplet repeat RNA binding protein 2, NAPOR, BRUNOL3. Note that ETR-3 induces exon 5 inclusion in cTNT gene (PMID:11931771), induces exon 9 inclusion in CFTR gene (PMID:15657417), promotes selectively the exclusion of Tau exon 2 (PMID:16862542).	15657417	Faustino NA, Cooper TA. (2005) Identification of putative new splicing targets for ETR-3 using sequences identified by systematic evolution of ligands by exponential enrichment. Mol Cell Biol. 25 (3): 879-887.		Sequences of 20nt random for SELEX.		SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA.
ETR-3	UGUGUG	7	Gene Name and Synonymous: CUGBP2, CUG triplet repeat RNA binding protein 2, NAPOR, BRUNOL3. Note that ETR-3 induces exon 5 inclusion in cTNT gene (PMID:11931771), induces exon 9 inclusion in CFTR gene (PMID:15657417), promotes selectively the exclusion of Tau exon 2 (PMID:16862542).	15657417	Faustino NA, Cooper TA. (2005) Identification of putative new splicing targets for ETR-3 using sequences identified by systematic evolution of ligands by exponential enrichment. Mol Cell Biol. 25 (3): 879-887.		Sequences of 20nt random for SELEX.		SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA.
ETR-3	UGUUGU	6	Gene Name and Synonymous: CUGBP2, CUG triplet repeat RNA binding protein 2, NAPOR, BRUNOL3. Note that ETR-3 induces exon 5 inclusion in cTNT gene (PMID:11931771), induces exon 9 inclusion in CFTR gene (PMID:15657417), promotes selectively the exclusion of Tau exon 2 (PMID:16862542).	15657417	Faustino NA, Cooper TA. (2005) Identification of putative new splicing targets for ETR-3 using sequences identified by systematic evolution of ligands by exponential enrichment. Mol Cell Biol. 25 (3): 879-887.		Sequences of 20nt random for SELEX.		SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA.
ETR-3	GUAUGU	4	Gene Name and Synonymous: CUGBP2, CUG triplet repeat RNA binding protein 2, NAPOR, BRUNOL3. Note that ETR-3 induces exon 5 inclusion in cTNT gene (PMID:11931771), induces exon 9 inclusion in CFTR gene (PMID:15657417), promotes selectively the exclusion of Tau exon 2 (PMID:16862542).	15657417	Faustino NA, Cooper TA. (2005) Identification of putative new splicing targets for ETR-3 using sequences identified by systematic evolution of ligands by exponential enrichment. Mol Cell Biol. 25 (3): 879-887.		Sequences of 20nt random for SELEX.		SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA.
ETR-3	GUUGUU	4	Gene Name and Synonymous: CUGBP2, CUG triplet repeat RNA binding protein 2, NAPOR, BRUNOL3. Note that ETR-3 induces exon 5 inclusion in cTNT gene (PMID:11931771), induces exon 9 inclusion in CFTR gene (PMID:15657417), promotes selectively the exclusion of Tau exon 2 (PMID:16862542).	15657417	Faustino NA, Cooper TA. (2005) Identification of putative new splicing targets for ETR-3 using sequences identified by systematic evolution of ligands by exponential enrichment. Mol Cell Biol. 25 (3): 879-887.		Sequences of 20nt random for SELEX.		SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA.
ETR-3	UAUGUG	4	Gene Name and Synonymous: CUGBP2, CUG triplet repeat RNA binding protein 2, NAPOR, BRUNOL3. Note that ETR-3 induces exon 5 inclusion in cTNT gene (PMID:11931771), induces exon 9 inclusion in CFTR gene (PMID:15657417), promotes selectively the exclusion of Tau exon 2 (PMID:16862542).	15657417	Faustino NA, Cooper TA. (2005) Identification of putative new splicing targets for ETR-3 using sequences identified by systematic evolution of ligands by exponential enrichment. Mol Cell Biol. 25 (3): 879-887.		Sequences of 20nt random for SELEX.		SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA.
ETR-3	UAUGUU	4	Gene Name and Synonymous: CUGBP2, CUG triplet repeat RNA binding protein 2, NAPOR, BRUNOL3. Note that ETR-3 induces exon 5 inclusion in cTNT gene (PMID:11931771), induces exon 9 inclusion in CFTR gene (PMID:15657417), promotes selectively the exclusion of Tau exon 2 (PMID:16862542).	15657417	Faustino NA, Cooper TA. (2005) Identification of putative new splicing targets for ETR-3 using sequences identified by systematic evolution of ligands by exponential enrichment. Mol Cell Biol. 25 (3): 879-887.		Sequences of 20nt random for SELEX.		SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA.
ETR-3	UUGUGU	4	Gene Name and Synonymous: CUGBP2, CUG triplet repeat RNA binding protein 2, NAPOR, BRUNOL3. Note that ETR-3 induces exon 5 inclusion in cTNT gene (PMID:11931771), induces exon 9 inclusion in CFTR gene (PMID:15657417), promotes selectively the exclusion of Tau exon 2 (PMID:16862542).	15657417	Faustino NA, Cooper TA. (2005) Identification of putative new splicing targets for ETR-3 using sequences identified by systematic evolution of ligands by exponential enrichment. Mol Cell Biol. 25 (3): 879-887.		Sequences of 20nt random for SELEX.		SELEX of 20nt random with recombinant protein, some winner sequences are verified by EMSA.
ETR-3	CUGCUGCUGCUGCUGCUGCUGCUGCUGCUG	-10	Gene Name and Synonymous: CUGBP2, CUG triplet repeat RNA binding protein 2, NAPOR, BRUNOL3. Note that ETR-3 induces exon 5 inclusion in cTNT gene (PMID:11931771), induces exon 9 inclusion in CFTR gene (PMID:15657417), promotes selectively the exclusion of Tau exon 2 (PMID:16862542).	8912635	Bhagavati S, Ghatpande A, Leung B. (1996) Identification of two nuclear proteins which bind to RNA CUG repeats: significance for myotonic dystrophy. Biochem Biophys Res Commun. 228(1):55-62.		Synthesized sequences		EMSA, UV-crosslink, protein purification
ETR-3	CUCUCUCUCUCUCUCUCUCUCUCUCUCUCU	-8	Gene Name and Synonymous: CUGBP2, CUG triplet repeat RNA binding protein 2, NAPOR, BRUNOL3. Note that ETR-3 induces exon 5 inclusion in cTNT gene (PMID:11931771), induces exon 9 inclusion in CFTR gene (PMID:15657417), promotes selectively the exclusion of Tau exon 2 (PMID:16862542).	8912635	Bhagavati S, Ghatpande A, Leung B. (1996) Identification of two nuclear proteins which bind to RNA CUG repeats: significance for myotonic dystrophy. Biochem Biophys Res Commun. 228(1):55-62.		Synthesized sequences		EMSA, UV-crosslink, protein purification
ETR-3	UUUUUUUGUUGUGUUUUUUCCUU	-8	Gene Name and Synonymous: CUGBP2, CUG triplet repeat RNA binding protein 2, NAPOR, BRUNOL3. Note that ETR-3 induces exon 5 inclusion in cTNT gene (PMID:11931771), induces exon 9 inclusion in CFTR gene (PMID:15657417), promotes selectively the exclusion of Tau exon 2 (PMID:16862542).	8912635	Bhagavati S, Ghatpande A, Leung B. (1996) Identification of two nuclear proteins which bind to RNA CUG repeats: significance for myotonic dystrophy. Biochem Biophys Res Commun. 228(1):55-62.		Synthesized sequences		EMSA, UV-crosslink, protein purification
ETR-3	UGUGUGUGUGUGUGUGUGUGUGUUUUU	-4	Gene Name and Synonymous: CUGBP2, CUG triplet repeat RNA binding protein 2, NAPOR, BRUNOL3. Note that ETR-3 induces exon 5 inclusion in cTNT gene (PMID:11931771), induces exon 9 inclusion in CFTR gene (PMID:15657417), promotes selectively the exclusion of Tau exon 2 (PMID:16862542).	20631008	Dujardin G, Buratti E, Charlet-Berguerand N, Martins de Araujo M, Mbopda A, Le Jossic-Corcos C, Pagani F, Ferec C, Corcos L. (2010) CELF proteins regulate CFTR pre-mRNA splicing: essential role of the divergent domain of ETR-3. Nucleic Acids Res. 38(20):7273-7285.		Constructs of wt and mutated CFTR [1080] INT8 - EX9 - INT9	In vivo splicing in HeLa, HGT-1, HCT116	EMSA with recombinant protein. siRNA.
ETR-3	UGUGUGUGUGUGUGUGUGUGUGUGUUUUU	-6	Gene Name and Synonymous: CUGBP2, CUG triplet repeat RNA binding protein 2, NAPOR, BRUNOL3. Note that ETR-3 induces exon 5 inclusion in cTNT gene (PMID:11931771), induces exon 9 inclusion in CFTR gene (PMID:15657417), promotes selectively the exclusion of Tau exon 2 (PMID:16862542).	20631008	Dujardin G, Buratti E, Charlet-Berguerand N, Martins de Araujo M, Mbopda A, Le Jossic-Corcos C, Pagani F, Ferec C, Corcos L. (2010) CELF proteins regulate CFTR pre-mRNA splicing: essential role of the divergent domain of ETR-3. Nucleic Acids Res. 38(20):7273-7285.		Constructs of wt and mutated CFTR [1080] INT8 - EX9 - INT9	In vivo splicing in HeLa, HGT-1, HCT116	EMSA with recombinant protein. siRNA.
ETR-3	UGUGUGUGUGUGUGUGUGUGUGUGUGUUUUU	-8	Gene Name and Synonymous: CUGBP2, CUG triplet repeat RNA binding protein 2, NAPOR, BRUNOL3. Note that ETR-3 induces exon 5 inclusion in cTNT gene (PMID:11931771), induces exon 9 inclusion in CFTR gene (PMID:15657417), promotes selectively the exclusion of Tau exon 2 (PMID:16862542).	20631008	Dujardin G, Buratti E, Charlet-Berguerand N, Martins de Araujo M, Mbopda A, Le Jossic-Corcos C, Pagani F, Ferec C, Corcos L. (2010) CELF proteins regulate CFTR pre-mRNA splicing: essential role of the divergent domain of ETR-3. Nucleic Acids Res. 38(20):7273-7285.		Constructs of wt and mutated CFTR [1080] INT8 - EX9 - INT9	In vivo splicing in HeLa, HGT-1, HCT116	EMSA with recombinant protein. siRNA.
FMRP	GAAGAGGACAAGGAGGAAGAGGACGUGGAGGAGGC	5	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	11532944	Schaeffer C, Bardoni B, Mandel JL, Ehresmann B, Ehresmann C, Moine H. (2001) The fragile X mental retardation protein binds specifically to its mRNA via a purine quartet motif. EMBO J. 20(17): 4803-4813.	This long motif form a correct G-quartet structure.	Synthesized sequences.		EMSA, competition assay, ladder selection with recombinant protein.
FMRP	AAGAGAGGGAGAGCUUCCUGCGCAGAGGAGACGGACGGCGGCGUGGAGGGGGAGGAAGAGGACAAGGAGGAAGAGGACGUGGAGGAGGCUUCAAAGGAAAC	10	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	11532944	Schaeffer C, Bardoni B, Mandel JL, Ehresmann B, Ehresmann C, Moine H. (2001) The fragile X mental retardation protein binds specifically to its mRNA via a purine quartet motif. EMBO J. 20(17): 4803-4813.	This long motif form a correct G-quartet structure.	Synthesized sequences.		EMSA, competition assay, ladder selection with recombinant protein.
FMRP	GGAGGAAGAGGACAAGGAGGAAGAGGACGUGGAGGAGGCUUCAAA	5	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	18653529	Didiot MC, Tian Z, Schaeffer C, Subramanian M, Mandel JL, Moine H. (2008) The G-quartet containing FMRP binding site in FMR1 mRNA is a potent exonic splicing enhancer. Nucleic Acids Res. 36(15): 4902-4912.	This short motif is still able to form a G-quartet structure.	Construct of beta-globin [3043] EX1 - INT1 - EX2 - INT2 - EX3 - INT3 - EX4, with putative and mutant ESEs inserted in EX2.	In vivo splicing in HeLa cells.	Site directed mutagenesis, EMSA, competition assay.
FMRP	GCUGCGGUGUGGAAGGAGUGGCUGGGUUGCGCAGC	10	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	11719189	Darnell JC, Jensen KB, Jin P, Brown V, Warren ST, Darnell RB. (2001) Fragile X mental retardation protein targets G quartet mRNAs important for neuronal function. Cell. 107(4): 489-499.	Binding site with score 2 are not confermed by RNase T1 protection assay. Binding site may be longer, so able to form G-quartet structure.	Synthesized sequences.		Column RNA affinity, mutational analysis, RNase T1 protection assay, nitrocellulose filter binding assays, EMSA supershift with recombinant protein.
FMRP	AAGGGUAGGAUGGGAUGGCUGGCGAGG	2	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	11719189	Darnell JC, Jensen KB, Jin P, Brown V, Warren ST, Darnell RB. (2001) Fragile X mental retardation protein targets G quartet mRNAs important for neuronal function. Cell. 107(4): 489-499.	Binding site with score 2 are not confermed by RNase T1 protection assay. Binding site may be longer, so able to form G-quartet structure.	Synthesized sequences.		Column RNA affinity, mutational analysis, RNase T1 protection assay, nitrocellulose filter binding assays, EMSA supershift with recombinant protein.
FMRP	AAGGUAGGGUGGUUGGG	2	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	11719189	Darnell JC, Jensen KB, Jin P, Brown V, Warren ST, Darnell RB. (2001) Fragile X mental retardation protein targets G quartet mRNAs important for neuronal function. Cell. 107(4): 489-499.	Binding site with score 2 are not confermed by RNase T1 protection assay. Binding site may be longer, so able to form G-quartet structure.	Synthesized sequences.		Column RNA affinity, mutational analysis, RNase T1 protection assay, nitrocellulose filter binding assays, EMSA supershift with recombinant protein.
FMRP	GUGGGUGGUUGGGUGG	2	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	11719189	Darnell JC, Jensen KB, Jin P, Brown V, Warren ST, Darnell RB. (2001) Fragile X mental retardation protein targets G quartet mRNAs important for neuronal function. Cell. 107(4): 489-499.	Binding site with score 2 are not confermed by RNase T1 protection assay. Binding site may be longer, so able to form G-quartet structure.	Synthesized sequences.		Column RNA affinity, mutational analysis, RNase T1 protection assay, nitrocellulose filter binding assays, EMSA supershift with recombinant protein.
FMRP	GAGGAGUUGGAAGGAUGGG	2	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	11719189	Darnell JC, Jensen KB, Jin P, Brown V, Warren ST, Darnell RB. (2001) Fragile X mental retardation protein targets G quartet mRNAs important for neuronal function. Cell. 107(4): 489-499.	Binding site with score 2 are not confermed by RNase T1 protection assay. Binding site may be longer, so able to form G-quartet structure.	Synthesized sequences.		Column RNA affinity, mutational analysis, RNase T1 protection assay, nitrocellulose filter binding assays, EMSA supershift with recombinant protein.
FMRP	AAGCGGCUGG	10	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	15805463	Darnell JC, Fraser CE, Mostovetsky O, Stefani G, Jones TA, Eddy SR, Darnell RB. (2005) Kissing complex RNAs mediate interaction between the Fragile-X mental retardation protein KH2 domain and brain polyribosomes. Genes Dev. 19(8): 903-918.		Sequences of 52nt random for SELEX.		SELEX of 52nt random with recombinant protein. Filter binding assays and EMSA supershift with recombinant protein.
FMRP	GAGCGAAGGGAG	7	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	15805463	Darnell JC, Fraser CE, Mostovetsky O, Stefani G, Jones TA, Eddy SR, Darnell RB. (2005) Kissing complex RNAs mediate interaction between the Fragile-X mental retardation protein KH2 domain and brain polyribosomes. Genes Dev. 19(8): 903-918.		Sequences of 52nt random for SELEX.		SELEX of 52nt random with recombinant protein. Filter binding assays and EMSA supershift with recombinant protein.
FMRP	GAGCGACUGG	6	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	15805463	Darnell JC, Fraser CE, Mostovetsky O, Stefani G, Jones TA, Eddy SR, Darnell RB. (2005) Kissing complex RNAs mediate interaction between the Fragile-X mental retardation protein KH2 domain and brain polyribosomes. Genes Dev. 19(8): 903-918.		Sequences of 52nt random for SELEX.		SELEX of 52nt random with recombinant protein. Filter binding assays and EMSA supershift with recombinant protein.
FMRP	GAGCGACUGGUG	2	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	15805463	Darnell JC, Fraser CE, Mostovetsky O, Stefani G, Jones TA, Eddy SR, Darnell RB. (2005) Kissing complex RNAs mediate interaction between the Fragile-X mental retardation protein KH2 domain and brain polyribosomes. Genes Dev. 19(8): 903-918.		Sequences of 52nt random for SELEX.		SELEX of 52nt random with recombinant protein. Filter binding assays and EMSA supershift with recombinant protein.
FMRP	GAGCGGCUGG	7	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	15805463	Darnell JC, Fraser CE, Mostovetsky O, Stefani G, Jones TA, Eddy SR, Darnell RB. (2005) Kissing complex RNAs mediate interaction between the Fragile-X mental retardation protein KH2 domain and brain polyribosomes. Genes Dev. 19(8): 903-918.		Sequences of 52nt random for SELEX.		SELEX of 52nt random with recombinant protein. Filter binding assays and EMSA supershift with recombinant protein.
FMRP	GGACUAAGGAGU	8	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	15805463	Darnell JC, Fraser CE, Mostovetsky O, Stefani G, Jones TA, Eddy SR, Darnell RB. (2005) Kissing complex RNAs mediate interaction between the Fragile-X mental retardation protein KH2 domain and brain polyribosomes. Genes Dev. 19(8): 903-918.		Sequences of 52nt random for SELEX.		SELEX of 52nt random with recombinant protein. Filter binding assays and EMSA supershift with recombinant protein.
FMRP	GGGCAUAGGCAC	8	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	15805463	Darnell JC, Fraser CE, Mostovetsky O, Stefani G, Jones TA, Eddy SR, Darnell RB. (2005) Kissing complex RNAs mediate interaction between the Fragile-X mental retardation protein KH2 domain and brain polyribosomes. Genes Dev. 19(8): 903-918.		Sequences of 52nt random for SELEX.		SELEX of 52nt random with recombinant protein. Filter binding assays and EMSA supershift with recombinant protein.
FMRP	GGGCGAAGGAAG	10	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	15805463	Darnell JC, Fraser CE, Mostovetsky O, Stefani G, Jones TA, Eddy SR, Darnell RB. (2005) Kissing complex RNAs mediate interaction between the Fragile-X mental retardation protein KH2 domain and brain polyribosomes. Genes Dev. 19(8): 903-918.		Sequences of 52nt random for SELEX.		SELEX of 52nt random with recombinant protein. Filter binding assays and EMSA supershift with recombinant protein.
FMRP	GGGCGAAGGAGU	9	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	15805463	Darnell JC, Fraser CE, Mostovetsky O, Stefani G, Jones TA, Eddy SR, Darnell RB. (2005) Kissing complex RNAs mediate interaction between the Fragile-X mental retardation protein KH2 domain and brain polyribosomes. Genes Dev. 19(8): 903-918.		Sequences of 52nt random for SELEX.		SELEX of 52nt random with recombinant protein. Filter binding assays and EMSA supershift with recombinant protein.
FMRP	GGGCGAAGGGAG	10	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	15805463	Darnell JC, Fraser CE, Mostovetsky O, Stefani G, Jones TA, Eddy SR, Darnell RB. (2005) Kissing complex RNAs mediate interaction between the Fragile-X mental retardation protein KH2 domain and brain polyribosomes. Genes Dev. 19(8): 903-918.		Sequences of 52nt random for SELEX.		SELEX of 52nt random with recombinant protein. Filter binding assays and EMSA supershift with recombinant protein.
FMRP	GGGCUAAGGAAU	6	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	15805463	Darnell JC, Fraser CE, Mostovetsky O, Stefani G, Jones TA, Eddy SR, Darnell RB. (2005) Kissing complex RNAs mediate interaction between the Fragile-X mental retardation protein KH2 domain and brain polyribosomes. Genes Dev. 19(8): 903-918.		Sequences of 52nt random for SELEX.		SELEX of 52nt random with recombinant protein. Filter binding assays and EMSA supershift with recombinant protein.
FMRP	GGGCUAAGGAGU	2	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	15805463	Darnell JC, Fraser CE, Mostovetsky O, Stefani G, Jones TA, Eddy SR, Darnell RB. (2005) Kissing complex RNAs mediate interaction between the Fragile-X mental retardation protein KH2 domain and brain polyribosomes. Genes Dev. 19(8): 903-918.		Sequences of 52nt random for SELEX.		SELEX of 52nt random with recombinant protein. Filter binding assays and EMSA supershift with recombinant protein.
FMRP	GGGCUAAGGAUU	7	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	15805463	Darnell JC, Fraser CE, Mostovetsky O, Stefani G, Jones TA, Eddy SR, Darnell RB. (2005) Kissing complex RNAs mediate interaction between the Fragile-X mental retardation protein KH2 domain and brain polyribosomes. Genes Dev. 19(8): 903-918.		Sequences of 52nt random for SELEX.		SELEX of 52nt random with recombinant protein. Filter binding assays and EMSA supershift with recombinant protein.
FMRP	GGGCUAUGGAGU	6	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	15805463	Darnell JC, Fraser CE, Mostovetsky O, Stefani G, Jones TA, Eddy SR, Darnell RB. (2005) Kissing complex RNAs mediate interaction between the Fragile-X mental retardation protein KH2 domain and brain polyribosomes. Genes Dev. 19(8): 903-918.		Sequences of 52nt random for SELEX.		SELEX of 52nt random with recombinant protein. Filter binding assays and EMSA supershift with recombinant protein.
FMRP	GGGCUGAAGGAAC	8	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	15805463	Darnell JC, Fraser CE, Mostovetsky O, Stefani G, Jones TA, Eddy SR, Darnell RB. (2005) Kissing complex RNAs mediate interaction between the Fragile-X mental retardation protein KH2 domain and brain polyribosomes. Genes Dev. 19(8): 903-918.		Sequences of 52nt random for SELEX.		SELEX of 52nt random with recombinant protein. Filter binding assays and EMSA supershift with recombinant protein.
FMRP	GGGCUGAAGGAAG	4	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	15805463	Darnell JC, Fraser CE, Mostovetsky O, Stefani G, Jones TA, Eddy SR, Darnell RB. (2005) Kissing complex RNAs mediate interaction between the Fragile-X mental retardation protein KH2 domain and brain polyribosomes. Genes Dev. 19(8): 903-918.		Sequences of 52nt random for SELEX.		SELEX of 52nt random with recombinant protein. Filter binding assays and EMSA supershift with recombinant protein.
FMRP	GGGCUGAGGAUG	6	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	15805463	Darnell JC, Fraser CE, Mostovetsky O, Stefani G, Jones TA, Eddy SR, Darnell RB. (2005) Kissing complex RNAs mediate interaction between the Fragile-X mental retardation protein KH2 domain and brain polyribosomes. Genes Dev. 19(8): 903-918.		Sequences of 52nt random for SELEX.		SELEX of 52nt random with recombinant protein. Filter binding assays and EMSA supershift with recombinant protein.
FMRP	GUGCGACUGGGC	4	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	15805463	Darnell JC, Fraser CE, Mostovetsky O, Stefani G, Jones TA, Eddy SR, Darnell RB. (2005) Kissing complex RNAs mediate interaction between the Fragile-X mental retardation protein KH2 domain and brain polyribosomes. Genes Dev. 19(8): 903-918.		Sequences of 52nt random for SELEX.		SELEX of 52nt random with recombinant protein. Filter binding assays and EMSA supershift with recombinant protein.
FMRP	GUGCGGCUGGGC	8	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	15805463	Darnell JC, Fraser CE, Mostovetsky O, Stefani G, Jones TA, Eddy SR, Darnell RB. (2005) Kissing complex RNAs mediate interaction between the Fragile-X mental retardation protein KH2 domain and brain polyribosomes. Genes Dev. 19(8): 903-918.		Sequences of 52nt random for SELEX.		SELEX of 52nt random with recombinant protein. Filter binding assays and EMSA supershift with recombinant protein.
FMRP	UAGCAGCUGG	7	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	15805463	Darnell JC, Fraser CE, Mostovetsky O, Stefani G, Jones TA, Eddy SR, Darnell RB. (2005) Kissing complex RNAs mediate interaction between the Fragile-X mental retardation protein KH2 domain and brain polyribosomes. Genes Dev. 19(8): 903-918.		Sequences of 52nt random for SELEX.		SELEX of 52nt random with recombinant protein. Filter binding assays and EMSA supershift with recombinant protein.
FMRP	UAGCGACUGG	10	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	15805463	Darnell JC, Fraser CE, Mostovetsky O, Stefani G, Jones TA, Eddy SR, Darnell RB. (2005) Kissing complex RNAs mediate interaction between the Fragile-X mental retardation protein KH2 domain and brain polyribosomes. Genes Dev. 19(8): 903-918.		Sequences of 52nt random for SELEX.		SELEX of 52nt random with recombinant protein. Filter binding assays and EMSA supershift with recombinant protein.
FMRP	UAGCGGCUGG	7	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	15805463	Darnell JC, Fraser CE, Mostovetsky O, Stefani G, Jones TA, Eddy SR, Darnell RB. (2005) Kissing complex RNAs mediate interaction between the Fragile-X mental retardation protein KH2 domain and brain polyribosomes. Genes Dev. 19(8): 903-918.		Sequences of 52nt random for SELEX.		SELEX of 52nt random with recombinant protein. Filter binding assays and EMSA supershift with recombinant protein.
FMRP	UAGUGGCUGG	8	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	15805463	Darnell JC, Fraser CE, Mostovetsky O, Stefani G, Jones TA, Eddy SR, Darnell RB. (2005) Kissing complex RNAs mediate interaction between the Fragile-X mental retardation protein KH2 domain and brain polyribosomes. Genes Dev. 19(8): 903-918.		Sequences of 52nt random for SELEX.		SELEX of 52nt random with recombinant protein. Filter binding assays and EMSA supershift with recombinant protein.
FMRP	GGGGUUGGGGAUUUAGCUCAGUGGUAGAGCGCUUGCCUAGCAAGCGCAAGGCCCUGGGUUCGGUCCUCAGCUCUGG	5	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	16006558	Zalfa F, Adinolfi S, Napoli I, Kuhn-Holsken E, Urlaub H, Achsel T, Pastore A, Bagni C. (2005) Fragile X mental retardation protein (FMRP) binds specifically to the brain cytoplasmic RNAs BC1/BC200 via a novel RNA-binding motif. J Biol Chem. 280(39): 33403-33410.		Synthesized sequences, Rodent brain-specific BC1 RNA.		EMSA, competition assay with recombinant protein.
FMRP	GGGGGGG	7	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	7688265	Siomi H, Siomi MC, Nussbaum RL, Dreyfuss G. (1993) The protein product of the fragile X gene, FMR1, has characteristics of an RNA-binding protein. Cell. 74(2):291-298.		Homopolymers		Homopolymer binding assay with recombinant protein
FMRP	UUUUUUU	4	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	7688265	Siomi H, Siomi MC, Nussbaum RL, Dreyfuss G. (1993) The protein product of the fragile X gene, FMR1, has characteristics of an RNA-binding protein. Cell. 74(2):291-298.		Homopolymers		Homopolymer binding assay with recombinant protein
FMRP	GGCUGCGGUGUGGAAGGUGAGGCUGGGUUGCGCAGCU	5	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	16819831	Zanotti KJ, Lackey PE, Evans GL, Mihailescu MR. (2006) Thermodynamics of the fragile X mental retardation protein RGG box interactions with G quartet forming RNA. Biochemistry. 45(27):8319-8330.		Synthesized sequences		EMSA with recombinant protein. Fluorescence and Circular Dichroism Spectroscopy.
FMRP	AAAAAAA	-2	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	8917439	Dejgaard K, Leffers H. (1996) Characterisation of the nucleic-acid-binding activity of KH domains. Different properties of different domains. Eur J Biochem. 241(2):425-431.		Synthesized oligos		Homopolymer binding assay with recombinant protein.
FMRP	GGCUGGUGAUUGGAAGGGAGGGAGGUGGCCAGCC	5	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	17693432	Menon L, Mihailescu MR. (2007) Interactions of the G quartet forming semaphorin 3F RNA with the RGG box domain of the fragile X protein family. Nucleic Acids Res. 35(16):5379-5392.		Synthesized sequences		EMSA supershift with recombinant protein. Fluorescence, UV and CD spectroscopy.
FMRP	GGAUUGGAAGGGAGGGAGGUG	5	Gene Name and Synonymous: FMR1, fragile X mental retardation 1, POF, POF1, FRAXA, MGC87458, FMR1. FMRP binds to its own mRNA in vitro, particularly a G-quartet motif (11532944), acting as a potent ESE (PMID: 18653529). It can also bind RNA using its kissing-loop motif (PMID: 15805463).	19396385	Bole M, Menon L, Mihailescu MR. (2008) Fragile X mental retardation protein recognition of G quadruplex structure per se is sufficient for high affinity binding to RNA. Mol Biosyst. 4(12):1212-1219.		Synthesized sequences		Fluorescence, UV and CD spectroscopy with recombinant protein.
Fox-1	AGCAUG	1	Gene Name and Synonymous: A2BP1, ataxin 2-binding protein 1, HRNBP1. Fox-1 can act both as splicing enhancer (PMID: 16537540) and as silencer (PMID: 17101796).	16537540	Ponthier JL, Schluepen C, Chen W, Lersch RA, Gee SL, Hou VC, Lo AJ, Short SA, Chasis JA, Winkelmann JC, Conboy JG. (2006) Fox-2 splicing factor binds to a conserved intron motif to promote inclusion of protein 4.1R alternative exon 16. J Biol Chem. 281(18): 12468-12474.		Construct of EPB41 [2035] from EX13 to EX17 for splicing assay. Sequences of 40nt random for SELEX.	In vitro splicing with HeLa nuclear extracts. In vivo splicing in HeLa.	SELEX of 40nt random with recombinant protein. Immunoblot, siRNA, pulldown assay.
Fox-1	UGCAUG	10	Gene Name and Synonymous: A2BP1, ataxin 2-binding protein 1, HRNBP1. Fox-1 can act both as splicing enhancer (PMID: 16537540) and as silencer (PMID: 17101796).	16537540	Ponthier JL, Schluepen C, Chen W, Lersch RA, Gee SL, Hou VC, Lo AJ, Short SA, Chasis JA, Winkelmann JC, Conboy JG. (2006) Fox-2 splicing factor binds to a conserved intron motif to promote inclusion of protein 4.1R alternative exon 16. J Biol Chem. 281(18): 12468-12474.		Construct of EPB41 [2035] from EX13 to EX17 for splicing assay. Sequences of 40nt random for SELEX.	In vitro splicing with HeLa nuclear extracts. In vivo splicing in HeLa.	SELEX of 40nt random with recombinant protein. Immunoblot, siRNA, pulldown assay.
Fox-1	UGCAUG	-5	Gene Name and Synonymous: A2BP1, ataxin 2-binding protein 1, HRNBP1. Fox-1 can act both as splicing enhancer (PMID: 16537540) and as silencer (PMID: 17101796).	17101796	Zhou HL, Baraniak AP, Lou H. (2007) Role for Fox-1/Fox-2 in mediating the neuronal pathway of calcitonin/calcitonin gene-related peptide alternative RNA processing. Mol Cell Biol. 27(3): 830-841.		Construct of wt and mutant calcitonin/CGRP CALCA [796] Ad_EX - INT3 - EX4.	In vivo splicing in HeLa cell.	siRNA-mediated knockdown, UV cross-linking with HeLa nuclear extract and immunoprecipitation.
Fox-1	UGACUG	-5	Gene Name and Synonymous: A2BP1, ataxin 2-binding protein 1, HRNBP1. Fox-1 can act both as splicing enhancer (PMID: 16537540) and as silencer (PMID: 17101796).	17101796	Zhou HL, Baraniak AP, Lou H. (2007) Role for Fox-1/Fox-2 in mediating the neuronal pathway of calcitonin/calcitonin gene-related peptide alternative RNA processing. Mol Cell Biol. 27(3): 830-841.		Construct of wt and mutant calcitonin/CGRP CALCA [796] Ad_EX - INT3 - EX4.	In vivo splicing in HeLa cell.	siRNA-mediated knockdown, UV cross-linking with HeLa nuclear extract and immunoprecipitation.
Fox-2	UGCAUG	10	Gene Name and Synonymous: RBFOX2, RNA binding protein, fox-1 homolog (C. elegans) 2, RTA, fxh, FOX2, RBM9, Fox-2, HNRBP2, HRNBP2, dJ106I20.3. Fox-2 can act both as splicing enhancer (PMID: 16537540) and as silencer (PMID: 17101796).	16537540	Ponthier JL, Schluepen C, Chen W, Lersch RA, Gee SL, Hou VC, Lo AJ, Short SA, Chasis JA, Winkelmann JC, Conboy JG. (2006) Fox-2 splicing factor binds to a conserved intron motif to promote inclusion of protein 4.1R alternative exon 16. J Biol Chem. 281(18): 12468-12474.		Construct of EPB41 [2035] from EX13 to EX17 for splicing assay. Sequences of 40nt random for SELEX.	In vitro splicing with HeLa nuclear extracts. In vivo splicing in HeLa.	SELEX of 40nt random with recombinant protein. Immunoblot, siRNA, pulldown assay.
Fox-2	UGCAUG	-5	Gene Name and Synonymous: RBFOX2, RNA binding protein, fox-1 homolog (C. elegans) 2, RTA, fxh, FOX2, RBM9, Fox-2, HNRBP2, HRNBP2, dJ106I20.3. Fox-2 can act both as splicing enhancer (PMID: 16537540) and as silencer (PMID: 17101796).	17101796	Zhou HL, Baraniak AP, Lou H. (2007) Role for Fox-1/Fox-2 in mediating the neuronal pathway of calcitonin/calcitonin gene-related peptide alternative RNA processing. Mol Cell Biol. 27(3): 830-841.		Construct of wt and mutant calcitonin/CGRP CALCA [796] Ad_EX - INT3 - EX4.	In vivo splicing in HeLa cell.	siRNA-mediated knockdown, UV cross-linking with HeLa nuclear extract and immunoprecipitation.
Fox-2	UGACUG	-5	Gene Name and Synonymous: RBFOX2, RNA binding protein, fox-1 homolog (C. elegans) 2, RTA, fxh, FOX2, RBM9, Fox-2, HNRBP2, HRNBP2, dJ106I20.3. Fox-2 can act both as splicing enhancer (PMID: 16537540) and as silencer (PMID: 17101796).	17101796	Zhou HL, Baraniak AP, Lou H. (2007) Role for Fox-1/Fox-2 in mediating the neuronal pathway of calcitonin/calcitonin gene-related peptide alternative RNA processing. Mol Cell Biol. 27(3): 830-841.		Construct of wt and mutant calcitonin/CGRP CALCA [796] Ad_EX - INT3 - EX4.	In vivo splicing in HeLa cell.	siRNA-mediated knockdown, UV cross-linking with HeLa nuclear extract and immunoprecipitation.
hnRNP A0	AUUUA	-3	Gene Name and Synonymous: HNRNPA0, heterogeneous nuclear ribonucleoprotein A0, HNRPA0.	7585247	Myer VE, Steitz JA. (1995) Isolation and characterization of a novel, low abundance hnRNP protein: A0. RNA. 1(2): 171-182.		Sequence of 30nt.		RNA affinity chromatography with HeLa nuclear extract confirmed by UV crosslink
hnRNP A0	AGAUAU	-8	Gene Name and Synonymous: HNRNPA0, heterogeneous nuclear ribonucleoprotein A0, HNRPA0.	24452013	Choudhury R, Roy SG, Tsai YS, Tripathy A, Graves LM, Wang Z. (2014) The splicing activator DAZAP1 integrates splicing control into MEK/Erk-regulated cell proliferation and migration. Nat Commun. 5:3078.		Synthetic sequences. Construct of Chinese hamster Dhfr [100689028] GFP - INT1 - EX2 - INT2 - GFP where INT2 contains a MS2 hairpin.	In vivo splicing in HEK-293T using MS2-DAZAP1 fusion proteins.	RNA affinity chromatography and SPR analysis with recombinant protein.
hnRNP A0	AAUUUA	-10	Gene Name and Synonymous: HNRNPA0, heterogeneous nuclear ribonucleoprotein A0, HNRPA0.	24452013	Choudhury R, Roy SG, Tsai YS, Tripathy A, Graves LM, Wang Z. (2014) The splicing activator DAZAP1 integrates splicing control into MEK/Erk-regulated cell proliferation and migration. Nat Commun. 5:3078.		Synthetic sequences. Construct of Chinese hamster Dhfr [100689028] GFP - INT1 - EX2 - INT2 - GFP where INT2 contains a MS2 hairpin.	In vivo splicing in HEK-293T using MS2-DAZAP1 fusion proteins.	RNA affinity chromatography and SPR analysis with recombinant protein.
hnRNP A0	AGUAGG	-9	Gene Name and Synonymous: HNRNPA0, heterogeneous nuclear ribonucleoprotein A0, HNRPA0.	24452013	Choudhury R, Roy SG, Tsai YS, Tripathy A, Graves LM, Wang Z. (2014) The splicing activator DAZAP1 integrates splicing control into MEK/Erk-regulated cell proliferation and migration. Nat Commun. 5:3078.		Synthetic sequences. Construct of Chinese hamster Dhfr [100689028] GFP - INT1 - EX2 - INT2 - GFP where INT2 contains a MS2 hairpin.	In vivo splicing in HEK-293T using MS2-DAZAP1 fusion proteins.	RNA affinity chromatography and SPR analysis with recombinant protein.
hnRNP A0	GGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCC	-6	Gene Name and Synonymous: HNRNPA0, heterogeneous nuclear ribonucleoprotein A0, HNRPA0.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP A0	AAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACC	-4	Gene Name and Synonymous: HNRNPA0, heterogeneous nuclear ribonucleoprotein A0, HNRPA0.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP A1	UAGGAA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	7510636	Burd CG, Dreyfuss G. (1994) RNA binding specificity of hnRNP A1: significance of hnRNP A1 high-affinity binding sites in pre-mRNA splicing. EMBO J. 13(5): 1197-1204.		Construct of major late transcription unit of adenovirus 2 EX1 - INT1 - EX2 for in vitro splicing assay. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear extracts.	SELEX of 20nt random sequences with recombinant protein. Winners confirmed by filter binding assays with purified protein. Confirmed by UV-crosslink and immunoblot with HeLa nuclear extract
hnRNP A1	UAGAGA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	7510636	Burd CG, Dreyfuss G. (1994) RNA binding specificity of hnRNP A1: significance of hnRNP A1 high-affinity binding sites in pre-mRNA splicing. EMBO J. 13(5): 1197-1204.		Construct of major late transcription unit of adenovirus 2 EX1 - INT1 - EX2 for in vitro splicing assay. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear extracts.	SELEX of 20nt random sequences with recombinant protein. Winners confirmed by filter binding assays with purified protein. Confirmed by UV-crosslink and immunoblot with HeLa nuclear extract
hnRNP A1	UAGGAU	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	7510636	Burd CG, Dreyfuss G. (1994) RNA binding specificity of hnRNP A1: significance of hnRNP A1 high-affinity binding sites in pre-mRNA splicing. EMBO J. 13(5): 1197-1204.		Construct of major late transcription unit of adenovirus 2 EX1 - INT1 - EX2 for in vitro splicing assay. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear extracts.	SELEX of 20nt random sequences with recombinant protein. Winners confirmed by filter binding assays with purified protein. Confirmed by UV-crosslink and immunoblot with HeLa nuclear extract
hnRNP A1	UAGGUA	-8	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	7510636	Burd CG, Dreyfuss G. (1994) RNA binding specificity of hnRNP A1: significance of hnRNP A1 high-affinity binding sites in pre-mRNA splicing. EMBO J. 13(5): 1197-1204.		Construct of major late transcription unit of adenovirus 2 EX1 - INT1 - EX2 for in vitro splicing assay. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear extracts.	SELEX of 20nt random sequences with recombinant protein. Winners confirmed by filter binding assays with purified protein. Confirmed by UV-crosslink and immunoblot with HeLa nuclear extract
hnRNP A1	UAGGCU	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	7510636	Burd CG, Dreyfuss G. (1994) RNA binding specificity of hnRNP A1: significance of hnRNP A1 high-affinity binding sites in pre-mRNA splicing. EMBO J. 13(5): 1197-1204.		Construct of major late transcription unit of adenovirus 2 EX1 - INT1 - EX2 for in vitro splicing assay. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear extracts.	SELEX of 20nt random sequences with recombinant protein. Winners confirmed by filter binding assays with purified protein. Confirmed by UV-crosslink and immunoblot with HeLa nuclear extract
hnRNP A1	CAGGGA	-7	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	7510636	Burd CG, Dreyfuss G. (1994) RNA binding specificity of hnRNP A1: significance of hnRNP A1 high-affinity binding sites in pre-mRNA splicing. EMBO J. 13(5): 1197-1204.		Construct of major late transcription unit of adenovirus 2 EX1 - INT1 - EX2 for in vitro splicing assay. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear extracts.	SELEX of 20nt random sequences with recombinant protein. Winners confirmed by filter binding assays with purified protein. Confirmed by UV-crosslink and immunoblot with HeLa nuclear extract
hnRNP A1	UAGGGA	-10	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	7510636	Burd CG, Dreyfuss G. (1994) RNA binding specificity of hnRNP A1: significance of hnRNP A1 high-affinity binding sites in pre-mRNA splicing. EMBO J. 13(5): 1197-1204.		Construct of major late transcription unit of adenovirus 2 EX1 - INT1 - EX2 for in vitro splicing assay. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear extracts.	SELEX of 20nt random sequences with recombinant protein. Winners confirmed by filter binding assays with purified protein. Confirmed by UV-crosslink and immunoblot with HeLa nuclear extract
hnRNP A1	UAGGGU	-10	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	7510636	Burd CG, Dreyfuss G. (1994) RNA binding specificity of hnRNP A1: significance of hnRNP A1 high-affinity binding sites in pre-mRNA splicing. EMBO J. 13(5): 1197-1204.		Construct of major late transcription unit of adenovirus 2 EX1 - INT1 - EX2 for in vitro splicing assay. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear extracts.	SELEX of 20nt random sequences with recombinant protein. Winners confirmed by filter binding assays with purified protein. Confirmed by UV-crosslink and immunoblot with HeLa nuclear extract
hnRNP A1	AUUUA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	8473331	Hamilton BJ, Nagy E, Malter JS, Arrick BA, Rigby WF. (1993) Association of heterogeneous nuclear ribonucleoprotein A1 and C proteins with reiterated AUUUA sequences. J Biol Chem. 268(12): 8881-7.		Partial sequence of colony stimulating factor 2 CSF2 [1437] 3'UTR.		UV crosslink and immunoprecipitation with cytoplasmic lysates of lymphocytes.
hnRNP A1	UAGACA	-8	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	12833158	Kashima T, Manley JL. (2003) A negative element in SMN2 exon 7 inhibits splicing in spinal muscular atrophy. Nat Genet. 34(4): 460-463.		Constructs and mutants of SMN1 [6606] and SMN2 [6607] EX7.	In vivo splicing in HeLa.	UV crosslink, SDS-PAGE, immunoprecipitation, siRNA and Western blot.
hnRNP A1	AUAGAA	-7	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	12419255	Marchand V, Mereau A, Jacquenet S, Thomas D, Mougin A, Gattoni R, Stevenin J, Branlant C. (2002) A Janus splicing regulatory element modulates HIV-1 tat and rev mRNA production by coordination of hnRNP A1 cooperative binding. J Mol Biol. 323(4): 629-652.		Constructs of HIV-1 A7 3' splice site	In vitro splicing with HeLa cell nuclear or cytoplasmic S100 extracts.	Competition assay, UV crosslink, immunoprecipitation with HeLa nuclear extracts, EMSA and supershift assays.
hnRNP A1	CUAGACUAGA	-6	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	10406810	Caputi M, Mayeda A, Krainer AR, Zahler AM. (1999) hnRNP A/B proteins are required for inhibition of HIV-1 pre-mRNA splicing. EMBO J. 18(14):4060-4067.		Constructs and mutants of HIV-1 tat [155871] EX1 - INT1 - EX2	In vitro splicing with HeLa nuclear extracts, nuclear extract depletion/reconsitution assay.	RNA affinity chromatography, immunoblotting.
hnRNP A1	AGAAC	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	18503770	Skoko N, Baralle M, Buratti E, Baralle FE. (2008) The pathological splicing mutation c.6792C>G in NF1 exon 37 causes a change of tenancy between antagonistic splicing factors. FEBS Lett. 582(15):2231-2236.		Constructs spanning from NF1 [4763] EX34 to EX38 for in vivo splicing. Sequences of NF1 EX37.	In vivo splicing in HeLa, siRNA.	UV crosslink, EMSA, and pull-down assays with HeLa nuclear extracts.
hnRNP A1	GGAGGA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	12612063	Rooke N, Markovtsov V, Cagavi E, Black DL. (2003) Roles for SR proteins and hnRNP A1 in the regulation of c-src exon N1. Mol Cell Biol. 23(6):1874-1884.		Construct of c-src [20779] EX_N1.	In vitro splicing with Weri-1, Weri-1 S100 and HeLa nuclear extracts.	UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts.
hnRNP A1	UAGGGCAGGC	-6	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	9858549	Del Gatto-Konczak F, Olive M, Gesnel MC, Breathnach R. (1999) hnRNP A1 recruited to an exon in vivo can function as an exon splicing silencer. Mol Cell Biol. 19(1):251-260.		Sequence and mutants of FGFR2 [2263] EX_KSAM, sequence and mutants of HIV1 tat [155871] EX2 for UV crosslink and immunoprecipitation. Constructs of FGFR2 EX_C1 - INT - EX_KSAM - INT - EX_BEK - INT - EX_C2 for in vivo splicing.	In vivo splicing in HeLa, SVK14 and 293 cells.	UV crosslink, immunoprecipitation in HeLa cell nuclear extracts.
hnRNP A1	UAGGGC	-6	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	9858549	Del Gatto-Konczak F, Olive M, Gesnel MC, Breathnach R. (1999) hnRNP A1 recruited to an exon in vivo can function as an exon splicing silencer. Mol Cell Biol. 19(1):251-260.		Sequence and mutants of FGFR2 [2263] EX_KSAM, sequence and mutants of HIV1 tat [155871] EX2 for UV crosslink and immunoprecipitation. Constructs of FGFR2 EX_C1 - INT - EX_KSAM - INT - EX_BEK - INT - EX_C2 for in vivo splicing.	In vivo splicing in HeLa, SVK14 and 293 cells.	UV crosslink, immunoprecipitation in HeLa cell nuclear extracts.
hnRNP A1	UAGAGU	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	9121425	Chabot B, Blanchette M, Lapierre I, La Branche H. (1997) An intron element modulating 5' splice site selection in the hnRNP A1 pre-mRNA interacts with hnRNP A1. Mol Cell Biol. 17(4):1776-1786.		Construct of murine hnRNP A1 [15382] EX7 - 7b - partial_EX8.	In vitro splicing assay in HeLa nuclear extracts. In vivo splicing assay using tranfected HeLa cells.	RNase protection, immunoprecipitation in HeLa nuclear extract.
hnRNP A1	UAGGCA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	11598017	Tange TO, Damgaard CK, Guth S, Valcarcel J, Kjems J. (2001) The hnRNP A1 protein regulates HIV-1 tat splicing via a novel intron silencer element. EMBO J. 20(20):5748-5758.		Construct of HIV-1 Tat [155871] INT2.	In vitro splicing with HeLa nuclear extracts, immunodepletion.	UV crosslink, immunoblot, EMSA.
hnRNP A1	UAGUGA	-7	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	11598017	Tange TO, Damgaard CK, Guth S, Valcarcel J, Kjems J. (2001) The hnRNP A1 protein regulates HIV-1 tat splicing via a novel intron silencer element. EMBO J. 20(20):5748-5758.		Construct of HIV-1 Tat [155871] INT2.	In vitro splicing with HeLa nuclear extracts, immunodepletion.	UV crosslink, immunoblot, EMSA.
hnRNP A1	UUUUUUU	-7	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	8449401	Patton JG, Porro EB, Galceran J, Tempst P, Nadal-Ginard B. (1993) Cloning and characterization of PSF, a novel pre-mRNA splicing factor. Genes Dev. 7(3):393-406.	PSF has no affinity to poly(rA), poly(rC) and poly(rG).	Construct of tropomyosin 1 alpha TPM1 [7168] EX2 - INT2 - EX3 for splicing. Construct of branchpoint and polypyrimidine tract element upstream of TPM1 EX3 for UV-crosslink.	In vitro splicing in HeLa nuclear extracts.	RNA affinity chromatography confirmed by UV crosslink and Western blot using HeLa nuclear extracts.
hnRNP A1	UUAGAUUAGA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	9275159	Li HP, Zhang X, Duncan R, Comai L, Lai MM. (1997) Heterogeneous nuclear ribonucleoprotein A1 binds to the transcription-regulatory region of mouse hepatitis virus RNA. Proc Natl Acad Sci U S A. 94(18): 9544-9549.		Sequence of (-)-strand leader RNA of mouse hepatitis virus (MHV). Intergenic sequences of mouse hepatitis virus (MHV).		UV crosslink with cytoplasmic extracts from HeLa cells. Protein identified by peptide sequencing and immunoprecipitation.
hnRNP A1	GUUUAGA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	9275159	Li HP, Zhang X, Duncan R, Comai L, Lai MM. (1997) Heterogeneous nuclear ribonucleoprotein A1 binds to the transcription-regulatory region of mouse hepatitis virus RNA. Proc Natl Acad Sci U S A. 94(18): 9544-9549.		Sequence of (-)-strand leader RNA of mouse hepatitis virus (MHV). Intergenic sequences of mouse hepatitis virus (MHV).		UV crosslink with cytoplasmic extracts from HeLa cells. Protein identified by peptide sequencing and immunoprecipitation.
hnRNP A1	CAAGCACCGAACCCGCAACUG	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	11024030	Shan J, Moran-Jones K, Munro TP, Kidd GJ, Winzor DJ, Hoek KS, Smith R. (2000) Binding of an RNA trafficking response element to heterogeneous nuclear ribonucleoproteins A1 and A2. J Biol Chem. 275(49): 38286-38295.		synthesized oligos		UV crosslink, EMSA, IAsys resonant mirror biosensor.
hnRNP A1	GCCAAGGAGCCAGAGAGCAUG	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	11024030	Shan J, Moran-Jones K, Munro TP, Kidd GJ, Winzor DJ, Hoek KS, Smith R. (2000) Binding of an RNA trafficking response element to heterogeneous nuclear ribonucleoproteins A1 and A2. J Biol Chem. 275(49): 38286-38295.		synthesized oligos		UV crosslink, EMSA, IAsys resonant mirror biosensor.
hnRNP A1	GCCCUUGGGUUUGCAUGCCACUGCAUGAGAGACGUUUAG	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	16537540	Ponthier JL, Schluepen C, Chen W, Lersch RA, Gee SL, Hou VC, Lo AJ, Short SA, Chasis JA, Winkelmann JC, Conboy JG. (2006) Fox-2 splicing factor binds to a conserved intron motif to promote inclusion of protein 4.1R alternative exon 16. J Biol Chem. 281(18): 12468-12474.		Construct of EPB41 [2035] from EX13 to EX17 for splicing assay. Sequences of 40nt random for SELEX.	In vitro splicing with HeLa nuclear extracts. In vivo splicing in HeLa.	SELEX of 40nt random with recombinant protein. Immunoblot, siRNA, pulldown assay.
hnRNP A1	GCCCUUGGGUUUGACUGCCACUGACUGAGAGACGUUUAG	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	16537540	Ponthier JL, Schluepen C, Chen W, Lersch RA, Gee SL, Hou VC, Lo AJ, Short SA, Chasis JA, Winkelmann JC, Conboy JG. (2006) Fox-2 splicing factor binds to a conserved intron motif to promote inclusion of protein 4.1R alternative exon 16. J Biol Chem. 281(18): 12468-12474.		Construct of EPB41 [2035] from EX13 to EX17 for splicing assay. Sequences of 40nt random for SELEX.	In vitro splicing with HeLa nuclear extracts. In vivo splicing in HeLa.	SELEX of 40nt random with recombinant protein. Immunoblot, siRNA, pulldown assay.
hnRNP A1	CGUAGGUC	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	15828859	Han K, Yeo G, An P, Burge CB, Grabowski PJ. (2005) A combinatorial code for splicing silencing: UAGG and GGGG motifs. PLoS Biol. 3(5):e158.	In this context, hnRNP A1 was shown to mediate silencing while hnRNP H1, H2, F enhance exon inclusion.	Synthesized sequences based on GRIN1 [2902] EX19.		Mutational analysis, UV crosslinking, immunoprecipitation in HeLa nuclear extracts.
hnRNP A1	UGAAGUAGAUUAGCAUCUACUGCCCUAAGUGCUCCUUCUGGCA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	17558416	Guil S, Caceres JF. (2007) The multifunctional RNA-binding protein hnRNP A1 is required for processing of miR-18a. Nat Struct Mol Biol. 14(7): 591-596.	hnRNP A1 facilitates processing of miR-18a.	HeLa endogenous RNAs.		In vivo UV cross-linking and immunoprecipitation (CLIP) in HeLa cells.
hnRNP A1	UAGGA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	19404736	Millevoi S, Bernat S, Telly D, Fouque F, Gladieff L, Favre G, Vagner S, Toulas C. (2009) The c.5242C>A BRCA1 missense variant induces exon skipping by increasing splicing repressors binding. Breast Cancer Res Treat. 120(2):391-399.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19. WT or mutated exon 18 RNA substrates.	In vitro splicing in HeLa nuclear extract	Mutational analysis, RNA affinity chromatography, UV cross-linking, immunoprecipitation with HeLa nuclear extract.
hnRNP A1	UAGUUAG	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	19404736	Millevoi S, Bernat S, Telly D, Fouque F, Gladieff L, Favre G, Vagner S, Toulas C. (2009) The c.5242C>A BRCA1 missense variant induces exon skipping by increasing splicing repressors binding. Breast Cancer Res Treat. 120(2):391-399.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19. WT or mutated exon 18 RNA substrates.	In vitro splicing in HeLa nuclear extract	Mutational analysis, RNA affinity chromatography, UV cross-linking, immunoprecipitation with HeLa nuclear extract.
hnRNP A1	CUUAG	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	19404736	Millevoi S, Bernat S, Telly D, Fouque F, Gladieff L, Favre G, Vagner S, Toulas C. (2009) The c.5242C>A BRCA1 missense variant induces exon skipping by increasing splicing repressors binding. Breast Cancer Res Treat. 120(2):391-399.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19. WT or mutated exon 18 RNA substrates.	In vitro splicing in HeLa nuclear extract	Mutational analysis, RNA affinity chromatography, UV cross-linking, immunoprecipitation with HeLa nuclear extract.
hnRNP A1	GAAGAAGAAGAAGAAGAAGAAGAAGAAGAA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	18597733	Baralle M, Pastor T, Bussani E, Pagani F. (2008) Influence of Friedreich ataxia GAA noncoding repeat expansions on pre-mRNA processing. Am J Hum Genet. 83(1): 77-88.		Synthesized sequences.		Mass spectrometry, immunoblot analysis.
hnRNP A1	UCGGGC	-3	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	9858549	Del Gatto-Konczak F, Olive M, Gesnel MC, Breathnach R. (1999) hnRNP A1 recruited to an exon in vivo can function as an exon splicing silencer. Mol Cell Biol. 19(1):251-260.		Sequence and mutants of FGFR2 [2263] EX_KSAM, sequence and mutants of HIV1 tat [155871] EX2 for UV crosslink and immunoprecipitation. Constructs of FGFR2 EX_C1 - INT - EX_KSAM - INT - EX_BEK - INT - EX_C2 for in vivo splicing.	In vivo splicing in HeLa, SVK14 and 293 cells.	UV crosslink, immunoprecipitation in HeLa cell nuclear extracts.
hnRNP A1	UACGGC	-3	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	9858549	Del Gatto-Konczak F, Olive M, Gesnel MC, Breathnach R. (1999) hnRNP A1 recruited to an exon in vivo can function as an exon splicing silencer. Mol Cell Biol. 19(1):251-260.		Sequence and mutants of FGFR2 [2263] EX_KSAM, sequence and mutants of HIV1 tat [155871] EX2 for UV crosslink and immunoprecipitation. Constructs of FGFR2 EX_C1 - INT - EX_KSAM - INT - EX_BEK - INT - EX_C2 for in vivo splicing.	In vivo splicing in HeLa, SVK14 and 293 cells.	UV crosslink, immunoprecipitation in HeLa cell nuclear extracts.
hnRNP A1	UAGAUCCUAGACUAGAGCCCUG	-6	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	9858549	Del Gatto-Konczak F, Olive M, Gesnel MC, Breathnach R. (1999) hnRNP A1 recruited to an exon in vivo can function as an exon splicing silencer. Mol Cell Biol. 19(1):251-260.		Sequence and mutants of FGFR2 [2263] EX_KSAM, sequence and mutants of HIV1 tat [155871] EX2 for UV crosslink and immunoprecipitation. Constructs of FGFR2 EX_C1 - INT - EX_KSAM - INT - EX_BEK - INT - EX_C2 for in vivo splicing.	In vivo splicing in HeLa, SVK14 and 293 cells.	UV crosslink, immunoprecipitation in HeLa cell nuclear extracts.
hnRNP A1	UAGGGACUUA	-6	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	10406810	Caputi M, Mayeda A, Krainer AR, Zahler AM. (1999) hnRNP A/B proteins are required for inhibition of HIV-1 pre-mRNA splicing. EMBO J. 18(14):4060-4067.		Constructs and mutants of HIV-1 tat [155871] EX1 - INT1 - EX2	In vitro splicing with HeLa nuclear extracts, nuclear extract depletion/reconsitution assay.	RNA affinity chromatography, immunoblotting.
hnRNP A1	GAGUGGUGCG	-6	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	10406810	Caputi M, Mayeda A, Krainer AR, Zahler AM. (1999) hnRNP A/B proteins are required for inhibition of HIV-1 pre-mRNA splicing. EMBO J. 18(14):4060-4067.		Constructs and mutants of HIV-1 tat [155871] EX1 - INT1 - EX2	In vitro splicing with HeLa nuclear extracts, nuclear extract depletion/reconsitution assay.	RNA affinity chromatography, immunoblotting.
hnRNP A1	GUAAGUACGC	-3	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	10406810	Caputi M, Mayeda A, Krainer AR, Zahler AM. (1999) hnRNP A/B proteins are required for inhibition of HIV-1 pre-mRNA splicing. EMBO J. 18(14):4060-4067.		Constructs and mutants of HIV-1 tat [155871] EX1 - INT1 - EX2	In vitro splicing with HeLa nuclear extracts, nuclear extract depletion/reconsitution assay.	RNA affinity chromatography, immunoblotting.
hnRNP A1	UAGUGAA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	11779509	Zhu J, Mayeda A, Krainer AR. (2001) Exon identity established through differential antagonism between exonic splicing silencer-bound hnRNP A1 and enhancer-bound SR proteins. Mol Cell. 8(6): 1351-1361.		Sequence of HIV-1 Tat [155871] EX3.	In Vitro Splicing with HeLa S100 and HeLa nuclear extracts.	UV crosslink, immunoprecipitation, affinity depletion, SDS-PAGE and Western blot.
hnRNP A1	AAGGUG	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	12612063	Rooke N, Markovtsov V, Cagavi E, Black DL. (2003) Roles for SR proteins and hnRNP A1 in the regulation of c-src exon N1. Mol Cell Biol. 23(6):1874-1884.		Construct of c-src [20779] EX_N1.	In vitro splicing with Weri-1, Weri-1 S100 and HeLa nuclear extracts.	UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts.
hnRNP A1	CUGAG	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	19404736	Millevoi S, Bernat S, Telly D, Fouque F, Gladieff L, Favre G, Vagner S, Toulas C. (2009) The c.5242C>A BRCA1 missense variant induces exon skipping by increasing splicing repressors binding. Breast Cancer Res Treat. 120(2):391-399.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19. WT or mutated exon 18 RNA substrates.	In vitro splicing in HeLa nuclear extract	Mutational analysis, RNA affinity chromatography, UV cross-linking, immunoprecipitation with HeLa nuclear extract.
hnRNP A1	AUAGCA	-9	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	12426391	Hou VC, Lersch R, Gee SL, Ponthier JL, Lo AJ, Wu M, Turck CW, Koury M, Krainer AR, Mayeda A, Conboy JG. (2002) Decrease in hnRNP A/B expression during erythropoiesis mediates a pre-mRNA splicing switch. EMBO J. 21(22):6195-6204.		Construct of murine Epb4.1 [269587] EX15 - INT15 - EX16 - INT16 - EX17	In vitro splicing assay with recombinant protein. In vivo splicing assay in HeLa cells.	RNA affinity isolation from HeLa nuclear extract using WT and mutated RNAs. Immunoblotting.
hnRNP A1	UUUAUA	-7	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	12426391	Hou VC, Lersch R, Gee SL, Ponthier JL, Lo AJ, Wu M, Turck CW, Koury M, Krainer AR, Mayeda A, Conboy JG. (2002) Decrease in hnRNP A/B expression during erythropoiesis mediates a pre-mRNA splicing switch. EMBO J. 21(22):6195-6204.		Construct of murine Epb4.1 [269587] EX15 - INT15 - EX16 - INT16 - EX17	In vitro splicing assay with recombinant protein. In vivo splicing assay in HeLa cells.	RNA affinity isolation from HeLa nuclear extract using WT and mutated RNAs. Immunoblotting.
hnRNP A1	AUUUAA	-2	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	12426391	Hou VC, Lersch R, Gee SL, Ponthier JL, Lo AJ, Wu M, Turck CW, Koury M, Krainer AR, Mayeda A, Conboy JG. (2002) Decrease in hnRNP A/B expression during erythropoiesis mediates a pre-mRNA splicing switch. EMBO J. 21(22):6195-6204.		Construct of murine Epb4.1 [269587] EX15 - INT15 - EX16 - INT16 - EX17	In vitro splicing assay with recombinant protein. In vivo splicing assay in HeLa cells.	RNA affinity isolation from HeLa nuclear extract using WT and mutated RNAs. Immunoblotting.
hnRNP A1	UUAGACUCUCCUUUUGGAUACCUAGAUGUUUUAACA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
hnRNP A1	UUAGACUCUCCUUUUGCAUACCUAGAUGUUUUAACA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
hnRNP A1	UUAGACUCUCCUUUUGGAUUCCUAGAUGUUUUAACA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
hnRNP A1	UUAGACUCCCCUUUUGGAUACCUAGAUGUUUUAACA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
hnRNP A1	UUAGACUCUCCUUUUGGGUACCUAGAUGUUUUAACA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
hnRNP A1	UUAGACUCUCCUUUUGGAUAUCUAGAUGUUUUAACA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
hnRNP A1	CUGAUUUGUAUUUAUUAGACUC	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
hnRNP A1	AACAGAAAAAGAAAUAUUU	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
hnRNP A1	CUGAUUUGUACCUAUUAGAUUC	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
hnRNP A1	UACUGAAGAACAAGUAUUU	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
hnRNP A1	CCAUGGUUUGGGGGCAGUAGUUGG	-1	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	19926721	Fisette JF, Toutant J, Dugre-Brisson S, Desgroseillers L, Chabot B. (2010) hnRNP A1 and hnRNP H can collaborate to modulate 5' splice site selection. RNA. 16(1):228-238.		Constructs of hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - EXL2_[Adenovirus] and hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - BCL2L1 [598] EX3	In vitro splicing with HeLa NE	Filter binding assay, EMSA using recombinant protein
hnRNP A1	AAGAAUGGGAAUAUUUUAUACUGACAGAAAUCAGUAAUAUUUAUAUAUUUAUAUUUUUAAAAUAUUUAUUUAUUUAUUUAUUUAAGUUCAUAUUCCAUAUUUAUUCAAGAUGUUUUACCGUAAUAAUUAUUAUUAAAAAUAUGCUUCUAAA	-8	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	9353343	Hamilton BJ, Burns CM, Nichols RC, Rigby WF. (1997) Modulation of AUUUA response element binding by heterogeneous nuclear ribonucleoprotein A1 in human T lymphocytes. The roles of cytoplasmic location, transcription, and phosphorylation. J Biol Chem. 272(45):28732-28741.		Synthesized sequences and sequence deriving from CSF2 [1437] and HBB [3043]		EMSA, UV cross-linking, immunoblotting, competition assay with human T lymphocytes extracts and recombinant protein
hnRNP A1	GGAUCCAUUUAUUUAUUUAUUUAAGCUUGG	-8	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	9353343	Hamilton BJ, Burns CM, Nichols RC, Rigby WF. (1997) Modulation of AUUUA response element binding by heterogeneous nuclear ribonucleoprotein A1 in human T lymphocytes. The roles of cytoplasmic location, transcription, and phosphorylation. J Biol Chem. 272(45):28732-28741.		Synthesized sequences and sequence deriving from CSF2 [1437] and HBB [3043]		EMSA, UV cross-linking, immunoblotting, competition assay with human T lymphocytes extracts and recombinant protein
hnRNP A1	UUGGUAUCAAGGUUACAAGACAGGUUUAAGGAGACCAAUAGAAACUGGGCAUGUGGAGACAGAGAAGACUCUUGGGUUUCUGAUAGGCACUGACUCUCUCUGCCUAUUGGUCUAUUUUCCCACCCUUAG	-3	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	9353343	Hamilton BJ, Burns CM, Nichols RC, Rigby WF. (1997) Modulation of AUUUA response element binding by heterogeneous nuclear ribonucleoprotein A1 in human T lymphocytes. The roles of cytoplasmic location, transcription, and phosphorylation. J Biol Chem. 272(45):28732-28741.		Synthesized sequences and sequence deriving from CSF2 [1437] and HBB [3043]		EMSA, UV cross-linking, immunoblotting, competition assay with human T lymphocytes extracts and recombinant protein
hnRNP A1	UAGGUUAGGAAUAGGGAAUUAAGG	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	9740129	Mayeda A, Munroe SH, Xu RM, Krainer AR. (1998) Distinct functions of the closely related tandem RNA-recognition motifs of hnRNP A1. RNA. 4(9):1111-1123.		Synthesized sequences		Filter binding assay with recombinant protein
hnRNP A1	UUAGAUCGAUGGGAAAAAAUUCGGUUAAGG	-10	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	9925777	Najera I, Krieg M, Karn J. (1999) Synergistic stimulation of HIV-1 rev-dependent export of unspliced mRNA to the cytoplasm by hnRNP A1. J Mol Biol. 285(5):1951-1964.		p17gag [155030] and synthesized sequences.		Mutation analysis, EMSA supershift and UV cross-linking in HeLa NE.
hnRNP A1	UAUGAUAGGGACUUAGGGUG	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	9925777	Najera I, Krieg M, Karn J. (1999) Synergistic stimulation of HIV-1 rev-dependent export of unspliced mRNA to the cytoplasm by hnRNP A1. J Mol Biol. 285(5):1951-1964.		p17gag [155030] and synthesized sequences.		Mutation analysis, EMSA supershift and UV cross-linking in HeLa NE.
hnRNP A1	CUAGUAGAAACUAAACUUA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	12060656	Hutchison S, LeBel C, Blanchette M, Chabot B. (2002) Distinct sets of adjacent heterogeneous nuclear ribonucleoprotein (hnRNP) A1/A2 binding sites control 5' splice site selection in the hnRNP A1 mRNA precursor. J Biol Chem. 277(33):29745-29752.		Constructs of wt and mutated mouse Hnrnpa1 [15382] EX7 - INT7 - EX7B - INT7 - Ad_EX	In vitro splicing in HeLa NE	EMSA with HeLa NE and recombinant protein. Depletion/reconstitution assay.
hnRNP A1	GAAGUAGAAACUAAACUUA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	12060656	Hutchison S, LeBel C, Blanchette M, Chabot B. (2002) Distinct sets of adjacent heterogeneous nuclear ribonucleoprotein (hnRNP) A1/A2 binding sites control 5' splice site selection in the hnRNP A1 mRNA precursor. J Biol Chem. 277(33):29745-29752.		Constructs of wt and mutated mouse Hnrnpa1 [15382] EX7 - INT7 - EX7B - INT7 - Ad_EX	In vitro splicing in HeLa NE	EMSA with HeLa NE and recombinant protein. Depletion/reconstitution assay.
hnRNP A1	CUUCUAGAAACUAAACUUA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	12060656	Hutchison S, LeBel C, Blanchette M, Chabot B. (2002) Distinct sets of adjacent heterogeneous nuclear ribonucleoprotein (hnRNP) A1/A2 binding sites control 5' splice site selection in the hnRNP A1 mRNA precursor. J Biol Chem. 277(33):29745-29752.		Constructs of wt and mutated mouse Hnrnpa1 [15382] EX7 - INT7 - EX7B - INT7 - Ad_EX	In vitro splicing in HeLa NE	EMSA with HeLa NE and recombinant protein. Depletion/reconstitution assay.
hnRNP A1	CUAGUACUAACUAAACUUA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	12060656	Hutchison S, LeBel C, Blanchette M, Chabot B. (2002) Distinct sets of adjacent heterogeneous nuclear ribonucleoprotein (hnRNP) A1/A2 binding sites control 5' splice site selection in the hnRNP A1 mRNA precursor. J Biol Chem. 277(33):29745-29752.		Constructs of wt and mutated mouse Hnrnpa1 [15382] EX7 - INT7 - EX7B - INT7 - Ad_EX	In vitro splicing in HeLa NE	EMSA with HeLa NE and recombinant protein. Depletion/reconstitution assay.
hnRNP A1	CUAGUAGAUUCUAAACUUA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	12060656	Hutchison S, LeBel C, Blanchette M, Chabot B. (2002) Distinct sets of adjacent heterogeneous nuclear ribonucleoprotein (hnRNP) A1/A2 binding sites control 5' splice site selection in the hnRNP A1 mRNA precursor. J Biol Chem. 277(33):29745-29752.		Constructs of wt and mutated mouse Hnrnpa1 [15382] EX7 - INT7 - EX7B - INT7 - Ad_EX	In vitro splicing in HeLa NE	EMSA with HeLa NE and recombinant protein. Depletion/reconstitution assay.
hnRNP A1	CUAGUAGAAACUAUUCUUA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	12060656	Hutchison S, LeBel C, Blanchette M, Chabot B. (2002) Distinct sets of adjacent heterogeneous nuclear ribonucleoprotein (hnRNP) A1/A2 binding sites control 5' splice site selection in the hnRNP A1 mRNA precursor. J Biol Chem. 277(33):29745-29752.		Constructs of wt and mutated mouse Hnrnpa1 [15382] EX7 - INT7 - EX7B - INT7 - Ad_EX	In vitro splicing in HeLa NE	EMSA with HeLa NE and recombinant protein. Depletion/reconstitution assay.
hnRNP A1	GAUCUAGAAACUAAACUUA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	12060656	Hutchison S, LeBel C, Blanchette M, Chabot B. (2002) Distinct sets of adjacent heterogeneous nuclear ribonucleoprotein (hnRNP) A1/A2 binding sites control 5' splice site selection in the hnRNP A1 mRNA precursor. J Biol Chem. 277(33):29745-29752.		Constructs of wt and mutated mouse Hnrnpa1 [15382] EX7 - INT7 - EX7B - INT7 - Ad_EX	In vitro splicing in HeLa NE	EMSA with HeLa NE and recombinant protein. Depletion/reconstitution assay.
hnRNP A1	AGCUAGAUUAGACUUC	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	12060656	Hutchison S, LeBel C, Blanchette M, Chabot B. (2002) Distinct sets of adjacent heterogeneous nuclear ribonucleoprotein (hnRNP) A1/A2 binding sites control 5' splice site selection in the hnRNP A1 mRNA precursor. J Biol Chem. 277(33):29745-29752.		Constructs of wt and mutated mouse Hnrnpa1 [15382] EX7 - INT7 - EX7B - INT7 - Ad_EX	In vitro splicing in HeLa NE	EMSA with HeLa NE and recombinant protein. Depletion/reconstitution assay.
hnRNP A1	AGCUAAGACUGGGGGCAGGAUGGCGGAAAGGAAGGGGCGUGGUGGCUAGAGGGAAGAGAAGAAACAGAAGCGGCUCAGUUCACCUUGAUAAGGUGCUUCCGA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	15155834	Christian K, Lang M, Maurel P, Raffalli-Mathieu F. (2004) Interaction of heterogeneous nuclear ribonucleoprotein A1 with cytochrome P450 2A6 mRNA: implications for post-transcriptional regulation of the CYP2A6 gene. Mol Pharmacol. 65(6):1405-1414.		Sequences deriving from CYP2A6 [1548]		UV cross-linking in primary hepatocyte NE and HepG2 NE
hnRNP A1	AGGGUUGAGGGGAGCAGGGU	-7	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	15208309	Expert-Bezancon A, Sureau A, Durosay P, Salesse R, Groeneveld H, Lecaer JP, Marie J. (2004) hnRNP A1 and the SR proteins ASF/SF2 and SC35 have antagonistic functions in splicing of beta-tropomyosin exon 6B. J Biol Chem. 279(37):38249-38259.		Sequences deriving from TPM3 [396430] and synthesized sequences. Construct of chicken TPM3 [396430] EX6B - INT7 - EX7.	In vitro splicing in HeLa NE	EMSA with recombinant protein. RNA affinity chromatography and immunoprecipitation in HeLa NE
hnRNP A1	AUUUAUUU	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	15514164	Thiele BJ, Doller A, Kahne T, Pregla R, Hetzer R, Regitz-Zagrosek V. (2004) RNA-binding proteins heterogeneous nuclear ribonucleoprotein A1, E1, and K are involved in post-transcriptional control of collagen I and III synthesis. Circ Res. 95(11):1058-1066.		Sequences deriving from COL1A1 [1277], COL1A2 [1278], COL3A1 [1281]		EMSA, UV cross-linking and immunoprecipitation with HT1080 cytoplasmic extracts or recombinant protein. MALDI-TOF.
hnRNP A1	GGGAGGAAGAAAUAGAAGAUGCAGAAGAGG	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	16000324	Venables JP, Bourgeois CF, Dalgliesh C, Kister L, Stevenin J, Elliott DJ. (2005) Up-regulation of the ubiquitous alternative splicing factor Tra2beta causes inclusion of a germ cell-specific exon. Hum Mol Genet. 14(16):2289-22303.		Constructs of wt or mutated HBB [3043]_EX2 - HIPK3 [10114]_INT3 - HIPK3 [10114]_EX3bis - HIPK3 [10114]_INT3 - HBB [3043]_ EX3. Sequences deriving from HIPK3 [10114].	In vivo splicing in HEK293 cells.	Pulldown assay and western blot with HeLa NE
hnRNP A1	UAGGGAUAGGGUUAGGGA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	16157593	Buratti E, Brindisi A, Giombi M, Tisminetzky S, Ayala YM, Baralle FE. (2005) TDP-43 binds heterogeneous nuclear ribonucleoprotein A/B through its C-terminal tail: an important region for the inhibition of cystic fibrosis transmembrane conductance regulator exon 9 splicing. J Biol Chem. 280(45):37572-37584.		Synthesized sequences		EMSA with recombinant protein
hnRNP A1	GGUUUCAGACAAAAUCA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	16385450	Cartegni L, Hastings ML, Calarco JA, de Stanchina E, Krainer AR. (2006) Determinants of exon 7 splicing in the spinal muscular atrophy genes, SMN1 and SMN2. Am J Hum Genet. 78(1):63-77.		Constructs of SMN1 [6606] and SMN2 [6607] EX6 - INT6 - EX7 - INT7 - EX8	In vitro splicing in HeLa	RNA affinity chromatography with HeLa NE, western blot.
hnRNP A1	GGUUUUAGACAAAAUCA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	16385450	Cartegni L, Hastings ML, Calarco JA, de Stanchina E, Krainer AR. (2006) Determinants of exon 7 splicing in the spinal muscular atrophy genes, SMN1 and SMN2. Am J Hum Genet. 78(1):63-77.		Constructs of SMN1 [6606] and SMN2 [6607] EX6 - INT6 - EX7 - INT7 - EX8	In vitro splicing in HeLa	RNA affinity chromatography with HeLa NE, western blot.
hnRNP A1	GAGGAG	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	16990281	Hallay H, Locker N, Ayadi L, Ropers D, Guittet E, Branlant C. (2006) Biochemical and NMR study on the competition between proteins SC35, SRp40, and heterogeneous nuclear ribonucleoprotein A1 at the HIV-1 Tat exon 2 splicing site. J Biol Chem. 281(48):37159-37174.		Sequences deriving from HIV-1 Tat [155871]		Competition assays with recombinant protein
hnRNP A1	UAUAAUGUUCUCUUUUUAGAAAAGGU	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	17287399	Lewis SM, Veyrier A, Hosszu Ungureanu N, Bonnal S, Vagner S, Holcik M. (2007) Subcellular relocalization of a trans-acting factor regulates XIAP IRES-dependent translation. Mol Biol Cell. 18(4):1302-1311.		Sequences deriving from XIAP [331]		UV cross-linking, competition assay with recombinant protein
hnRNP A1	GGACAAGUCCUAUUUUCAAGAGAAG	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	17287399	Lewis SM, Veyrier A, Hosszu Ungureanu N, Bonnal S, Vagner S, Holcik M. (2007) Subcellular relocalization of a trans-acting factor regulates XIAP IRES-dependent translation. Mol Biol Cell. 18(4):1302-1311.		Sequences deriving from XIAP [331]		UV cross-linking, competition assay with recombinant protein
hnRNP A1	CGAGAGCGUCGGUAUUAAGCGGGGGAGAAUUAGAUAAAUG	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP A1	CGAGAGCGUCGGUAUUAAGCGGAUCCGAAUUAGAUAAAUG	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP A1	GAGAAUUCGCUGGUCUCGAACUCCUGACCUCAAGUGAUCCCACCGAAUUCGA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	17353911	Donev R, Newall A, Thome J, Sheer D. (2007) A role for SC35 and hnRNPA1 in the determination of amyloid precursor protein isoforms. Mol Psychiatry. 12(7):681-690.		Synthesized sequences		EMSA with recombinant protein
hnRNP A1	GAGAAUUCGCUCCUGACCUCAAGUGAUCCCACCGAAUUCGA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	17353911	Donev R, Newall A, Thome J, Sheer D. (2007) A role for SC35 and hnRNPA1 in the determination of amyloid precursor protein isoforms. Mol Psychiatry. 12(7):681-690.		Synthesized sequences		EMSA with recombinant protein
hnRNP A1	CAGAAGGGGAGGGGUUCCA	-7	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	17567613	Wang E, Dimova N, Cambi F. (2007) PLP/DM20 ratio is regulated by hnRNPH and F and a novel G-rich enhancer in oligodendrocytes. Nucleic Acids Res. 35(12):4164-4178.		Sequences deriving from PLP1 [5354]. Constructs of PLP1 [5354] INT3 - EX3A - E3B - INT4.	In vivo splicing in oligodendroglial precursors.	RNA-affinity precipitations of oligodendroglial precursor NE, mass spectroscopy, western blot. siRNA
hnRNP A1	AACAAGGGGUGGGGGAAAA	-7	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	17567613	Wang E, Dimova N, Cambi F. (2007) PLP/DM20 ratio is regulated by hnRNPH and F and a novel G-rich enhancer in oligodendrocytes. Nucleic Acids Res. 35(12):4164-4178.		Sequences deriving from PLP1 [5354]. Constructs of PLP1 [5354] INT3 - EX3A - E3B - INT4.	In vivo splicing in oligodendroglial precursors.	RNA-affinity precipitations of oligodendroglial precursor NE, mass spectroscopy, western blot. siRNA
hnRNP A1	AUGUCUCUUUGGCUGCCUAGUGAGGCCACUGUCUACUUGCCUCCUGUCCCAGUAUCUAAGGUUGUAAGCACGGAUGAAUAUGUUGCACGCACAAACAUAUAUUAUCAUGCAGGAACAUCCAGACUACUU	-8	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	17869320	Zhao X, Fay J, Lambkin H, Schwartz S. (2007) Identification of a 17-nucleotide splicing enhancer in HPV-16 L1 that counteracts the effect of multiple hnRNP A1-binding splicing silencers. Virology. 369(2):351-363.		Sequences deriving from HPV-16 L1 mRNA and synthesized sequences.		UV cross-linking with HeLa NE and recombinant protein
hnRNP A1	UAGUGUAGUGUAGUGUAGUG	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	17869320	Zhao X, Fay J, Lambkin H, Schwartz S. (2007) Identification of a 17-nucleotide splicing enhancer in HPV-16 L1 that counteracts the effect of multiple hnRNP A1-binding splicing silencers. Virology. 369(2):351-363.		Sequences deriving from HPV-16 L1 mRNA and synthesized sequences.		UV cross-linking with HeLa NE and recombinant protein
hnRNP A1	AGACCUUUAGGGUUAGGGACAUCC	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	17925491	Eiring AM, Neviani P, Santhanam R, Oaks JJ, Chang JS, Notari M, Willis W, Gambacorti-Passerini C, Volinia S, Marcucci G, Caligiuri MA, Leone GW, Perrotti D. (2008) Identification of novel posttranscriptional targets of the BCR/ABL oncoprotein by ribonomics: requirement of E2F3 for BCR/ABL leukemogenesis. Blood. 111(2):816-828.		Sequences deriving from E2F3 [1871] and synthesized sequences.		EMSA, UV cross-linking, competition assays, western blot with K562 cytoplasmic extracts.
hnRNP A1	AGACCUCUAGGGAGAAAGACAUCC	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	17925491	Eiring AM, Neviani P, Santhanam R, Oaks JJ, Chang JS, Notari M, Willis W, Gambacorti-Passerini C, Volinia S, Marcucci G, Caligiuri MA, Leone GW, Perrotti D. (2008) Identification of novel posttranscriptional targets of the BCR/ABL oncoprotein by ribonomics: requirement of E2F3 for BCR/ABL leukemogenesis. Blood. 111(2):816-828.		Sequences deriving from E2F3 [1871] and synthesized sequences.		EMSA, UV cross-linking, competition assays, western blot with K562 cytoplasmic extracts.
hnRNP A1	GCUAAACGCAAAAAACGUAAGCUGUAAGUAUUGUAUGUAUGUUGAAUUAGUGUUGUUUGUUGUGUAUAUGUUUGUAUGU	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	17950949	Cheunim T, Zhang J, Milligan SG, McPhillips MG, Graham SV. (2008) The alternative splicing factor hnRNP A1 is up-regulated during virus-infected epithelial cell differentiation and binds the human papillomavirus type 16 late regulatory element. Virus Res. 131(2):189-198.		Sequences deriving from HPV-16 LRE.		EMSA supershift, UV cross-linking with HeLa NE and W12E NE. EMSA with recombinant protein.
hnRNP A1	CAGCAUUAUGAAAG	-10	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	18371932	Hua Y, Vickers TA, Okunola HL, Bennett CF, Krainer AR. (2008) Antisense masking of an hnRNP A1/A2 intronic splicing silencer corrects SMN2 splicing in transgenic mice. Am J Hum Genet. 82(4):834-848.		Sequences deriving from SMN2 [6607]. Constructs of SMN2 [6607] EX6 - INT6 - EX7 - INT7 - EX8.	In vitro splicing in HeLa NE and in vivo splicing in HEK293.	RNA-affinity chromatography, western blot with HeLa NE.
hnRNP A1	CCGCAUUAUGAAAG	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	18371932	Hua Y, Vickers TA, Okunola HL, Bennett CF, Krainer AR. (2008) Antisense masking of an hnRNP A1/A2 intronic splicing silencer corrects SMN2 splicing in transgenic mice. Am J Hum Genet. 82(4):834-848.		Sequences deriving from SMN2 [6607]. Constructs of SMN2 [6607] EX6 - INT6 - EX7 - INT7 - EX8.	In vitro splicing in HeLa NE and in vivo splicing in HEK293.	RNA-affinity chromatography, western blot with HeLa NE.
hnRNP A1	CAGCAUUAUGAACG	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	18371932	Hua Y, Vickers TA, Okunola HL, Bennett CF, Krainer AR. (2008) Antisense masking of an hnRNP A1/A2 intronic splicing silencer corrects SMN2 splicing in transgenic mice. Am J Hum Genet. 82(4):834-848.		Sequences deriving from SMN2 [6607]. Constructs of SMN2 [6607] EX6 - INT6 - EX7 - INT7 - EX8.	In vitro splicing in HeLa NE and in vivo splicing in HEK293.	RNA-affinity chromatography, western blot with HeLa NE.
hnRNP A1	CCGCAUUAUGAACG	-1	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	18371932	Hua Y, Vickers TA, Okunola HL, Bennett CF, Krainer AR. (2008) Antisense masking of an hnRNP A1/A2 intronic splicing silencer corrects SMN2 splicing in transgenic mice. Am J Hum Genet. 82(4):834-848.		Sequences deriving from SMN2 [6607]. Constructs of SMN2 [6607] EX6 - INT6 - EX7 - INT7 - EX8.	In vitro splicing in HeLa NE and in vivo splicing in HEK293.	RNA-affinity chromatography, western blot with HeLa NE.
hnRNP A1	UGCAGAUGCUUAGUUUGUGU	-8	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	18391021	Goina E, Skoko N, Pagani F. (2008) Binding of DAZAP1 and hnRNPA1/A2 to an exonic splicing silencer in a natural BRCA1 exon 18 mutant. Mol Cell Biol. 28(11):3850-3860.		Sequences deriving from FN1 [2335] and BRCA1 [672]. Constructs of wt and mutant BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19.	In vivo splicing in HeLa.	Pulldown assay, western blot with HeLa NE and EMSA with recombinant protein. siRNA.
hnRNP A1	UGCAGAUGGUUAGUUUGUGU	-10	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	18391021	Goina E, Skoko N, Pagani F. (2008) Binding of DAZAP1 and hnRNPA1/A2 to an exonic splicing silencer in a natural BRCA1 exon 18 mutant. Mol Cell Biol. 28(11):3850-3860.		Sequences deriving from FN1 [2335] and BRCA1 [672]. Constructs of wt and mutant BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19.	In vivo splicing in HeLa.	Pulldown assay, western blot with HeLa NE and EMSA with recombinant protein. siRNA.
hnRNP A1	CCCCCCC	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	3733753	Kumar A, Williams KR, Szer W. (1986) Purification and domain structure of core hnRNP proteins A1 and A2 and their relationship to single-stranded DNA-binding proteins. J Biol Chem. 261(24):11266-11273.		Synthesized oligos		Filter binding assay with purified protein
hnRNP A1	AAAAAAA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	3733753	Kumar A, Williams KR, Szer W. (1986) Purification and domain structure of core hnRNP proteins A1 and A2 and their relationship to single-stranded DNA-binding proteins. J Biol Chem. 261(24):11266-11273.		Synthesized oligos		Filter binding assay with purified protein
hnRNP A1	GUAUCCUUCCCUGGCCGUGAUAGUAGAGCAGCAGGGCCAGGGGGGUGACACACC	-2	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	16308319	McNally LM, Yee L, McNally MT. (2006) Heterogeneous nuclear ribonucleoprotein H is required for optimal U11 small nuclear ribonucleoprotein binding to a retroviral RNA-processing control element: implications for U12-dependent RNA splicing. J Biol Chem. 281(5):2478-2488.		Sequences deriving from wt and mutated RSV NRS region, SCN4A [6329], NOP2 [4839]. Constructs of EX_[RSV NRS] - INT_[RSV NRS] - NOP2 [4839] INT - NOP2 [4839] EX. Constructs of SCN4A [6329] EX2 - INT2 - EX3. Constructs of NOP2 [4839] EX7 - INT7 - EX8.	In vivo splicing in HEK293	UV cross-linking, MALDI-TOF and western blot with HeLa NE
hnRNP A1	AGGUAGGGCCCUAAGGGCA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	20010808	David CJ, Chen M, Assanah M, Canoll P, Manley JL. (2010) HnRNP proteins controlled by c-Myc deregulate pyruvate kinase mRNA splicing in cancer. Nature. 463(7279):364-368.		Sequences deriving from PKM2 [5315]. Construct of PKM2 [5315] EX9 - INT9 - AdML. Construct of PKM2 [5315] EX8 - INT8 - EX9 - INT9 - EX10 - INT10 - EX11.	In vitro splicing with HeLa NE. In vivo splicing in HeLa.	Protein affinity purification, mass spectrometry, UV cross-linking and immunoblotting with HeLa NE. siRNA.
hnRNP A1	AGGUAGGGCCCUAAGGGCA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	20010808	David CJ, Chen M, Assanah M, Canoll P, Manley JL. (2010) HnRNP proteins controlled by c-Myc deregulate pyruvate kinase mRNA splicing in cancer. Nature. 463(7279):364-368.		Sequences deriving from PKM2 [5315]. Construct of PKM2 [5315] EX9 - INT9 - AdML. Construct of PKM2 [5315] EX8 - INT8 - EX9 - INT9 - EX10 - INT10 - EX11.	In vitro splicing with HeLa NE. In vivo splicing in HeLa.	Protein affinity purification, mass spectrometry, UV cross-linking and immunoblotting with HeLa NE. siRNA.
hnRNP A1	AUAUAUUUAAUCUUAAUCUGUUUAUUUACAAGGGAAGAUUUAUGUUUGGUGAACUAUAUUA	-10	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	18846111	Zhao TT, Graber TE, Jordan LE, Cloutier M, Lewis SM, Goulet I, Cote J, Holcik M. (2009) hnRNP A1 regulates UV-induced NF-kappaB signalling through destabilization of cIAP1 mRNA. Cell Death Differ. 16(2):244-252.		Sequences deriving fromwt and mutated BIRC2 [329]		RNA-af?nity chromatography, western blot with HEK293 protein extracts. UV cross-linking with recombinant protein.
hnRNP A1	AUAUAGCAAUCUUAAUCUGUUUAUUUACAAGGGAAGAUUUAUGUUUGGUGAACUAUAUUA	-3	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	18846111	Zhao TT, Graber TE, Jordan LE, Cloutier M, Lewis SM, Goulet I, Cote J, Holcik M. (2009) hnRNP A1 regulates UV-induced NF-kappaB signalling through destabilization of cIAP1 mRNA. Cell Death Differ. 16(2):244-252.		Sequences deriving fromwt and mutated BIRC2 [329]		RNA-af?nity chromatography, western blot with HEK293 protein extracts. UV cross-linking with recombinant protein.
hnRNP A1	AUAUAUUUAAUCUUAAUCUGUUUAGCACAAGGGAAGAUUUAUGUUUGGUGAACUAUAUUA	-10	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	18846111	Zhao TT, Graber TE, Jordan LE, Cloutier M, Lewis SM, Goulet I, Cote J, Holcik M. (2009) hnRNP A1 regulates UV-induced NF-kappaB signalling through destabilization of cIAP1 mRNA. Cell Death Differ. 16(2):244-252.		Sequences deriving fromwt and mutated BIRC2 [329]		RNA-af?nity chromatography, western blot with HEK293 protein extracts. UV cross-linking with recombinant protein.
hnRNP A1	CAAAAAGAAGGAAGGUGCUCACAU	-10	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	19953646	Vezain M, Saugier-Veber P, Goina E, Touraine R, Manel V, Toutain A, Fehrenbach S, Frebourg T, Pagani F, Tosi M, Martins A. (2010) A rare SMN2 variant in a previously unrecognized composite splicing regulatory element induces exon 7 inclusion and reduces the clinical severity of spinal muscular atrophy. Hum Mutat. 31(1):E1110-1125.		Sequences deriving from wt and mutated SMN2 [6607]. Constructs of SMN2 [6607] EX6 - INT6 - EX7 - INT7 - EX8.	In vivo splicing in HEK293	UV cross-linking and western blot with HeLa NE, EMSA with recombinant protein
hnRNP A1	CAAAAAGAACGAAGGUGCUCACAU	-4	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	19953646	Vezain M, Saugier-Veber P, Goina E, Touraine R, Manel V, Toutain A, Fehrenbach S, Frebourg T, Pagani F, Tosi M, Martins A. (2010) A rare SMN2 variant in a previously unrecognized composite splicing regulatory element induces exon 7 inclusion and reduces the clinical severity of spinal muscular atrophy. Hum Mutat. 31(1):E1110-1125.		Sequences deriving from wt and mutated SMN2 [6607]. Constructs of SMN2 [6607] EX6 - INT6 - EX7 - INT7 - EX8.	In vivo splicing in HEK293	UV cross-linking and western blot with HeLa NE, EMSA with recombinant protein
hnRNP A1	UAUGAUAGGCUCAUAGGGUG	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	11571276	Caputi M, Zahler AM. (2001) Determination of the RNA Binding Specificity of the Heterogeneous Nuclear Ribonucleoprotein (hnRNP) H/H'/F/2H9 Family. J Biol Chem. 276(47): 43850-43859.		Synthesized oligos, constructs of Rev-dependent export (p17gag INS), beta-tropomyosin TPM2 [7169], c-src [20779].		RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography.
hnRNP A1	UAUGAUAGGCACUUAGGCUG	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	11571276	Caputi M, Zahler AM. (2001) Determination of the RNA Binding Specificity of the Heterogeneous Nuclear Ribonucleoprotein (hnRNP) H/H'/F/2H9 Family. J Biol Chem. 276(47): 43850-43859.		Synthesized oligos, constructs of Rev-dependent export (p17gag INS), beta-tropomyosin TPM2 [7169], c-src [20779].		RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography.
hnRNP A1	UUAGAUCGAUGGGAAAAAAUUCGUUAAGG	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	11571276	Caputi M, Zahler AM. (2001) Determination of the RNA Binding Specificity of the Heterogeneous Nuclear Ribonucleoprotein (hnRNP) H/H'/F/2H9 Family. J Biol Chem. 276(47): 43850-43859.		Synthesized oligos, constructs of Rev-dependent export (p17gag INS), beta-tropomyosin TPM2 [7169], c-src [20779].		RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography.
hnRNP A1	UUAGAUCGAUCCCAAAAAAUUCGUUAAGG	-2	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	11571276	Caputi M, Zahler AM. (2001) Determination of the RNA Binding Specificity of the Heterogeneous Nuclear Ribonucleoprotein (hnRNP) H/H'/F/2H9 Family. J Biol Chem. 276(47): 43850-43859.		Synthesized oligos, constructs of Rev-dependent export (p17gag INS), beta-tropomyosin TPM2 [7169], c-src [20779].		RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography.
hnRNP A1	UAAAUGUGGGGACCUAGAGGAGGAGCUGAAAAUUGUUA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	11571276	Caputi M, Zahler AM. (2001) Determination of the RNA Binding Specificity of the Heterogeneous Nuclear Ribonucleoprotein (hnRNP) H/H'/F/2H9 Family. J Biol Chem. 276(47): 43850-43859.		Synthesized oligos, constructs of Rev-dependent export (p17gag INS), beta-tropomyosin TPM2 [7169], c-src [20779].		RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography.
hnRNP A1	UAAACUACGCGACCUAGAGGAGGAGCUGAAAAUUGUUA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	11571276	Caputi M, Zahler AM. (2001) Determination of the RNA Binding Specificity of the Heterogeneous Nuclear Ribonucleoprotein (hnRNP) H/H'/F/2H9 Family. J Biol Chem. 276(47): 43850-43859.		Synthesized oligos, constructs of Rev-dependent export (p17gag INS), beta-tropomyosin TPM2 [7169], c-src [20779].		RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography.
hnRNP A1	UAUGACCCGGACUCCCGGUG	-2	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	11571276	Caputi M, Zahler AM. (2001) Determination of the RNA Binding Specificity of the Heterogeneous Nuclear Ribonucleoprotein (hnRNP) H/H'/F/2H9 Family. J Biol Chem. 276(47): 43850-43859.		Synthesized oligos, constructs of Rev-dependent export (p17gag INS), beta-tropomyosin TPM2 [7169], c-src [20779].		RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography.
hnRNP A1	UGCAAUGUACUUGCAAACAAUGGCCUGAGUGUGCAAAGAAAAUGUCUGCUAACUGC	-2	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	11571276	Caputi M, Zahler AM. (2001) Determination of the RNA Binding Specificity of the Heterogeneous Nuclear Ribonucleoprotein (hnRNP) H/H'/F/2H9 Family. J Biol Chem. 276(47): 43850-43859.		Synthesized oligos, constructs of Rev-dependent export (p17gag INS), beta-tropomyosin TPM2 [7169], c-src [20779].		RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography.
hnRNP A1	AUUUUCCUUACAGGGUUUUAGACAAAAUCAAAAAG	-10	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	18794368	Chen HH, Chang JG, Lu RM, Peng TY, Tarn WY. (2008) The RNA binding protein hnRNP Q modulates the utilization of exon 7 in the survival motor neuron 2 (SMN2) gene. Mol Cell Biol. 28(22):6929-6938.		Sequences deriving from SMN1 [6606], SMN2 [6607]. Constructs of wt and mutated SMN2 [6607] EX6 - INT6 - EX7 - INT7 - EX8.	In vivo splicing in HEK293.	RNA affinity chromatography using HeLa NE, MALDI-TOF. RNA affinity chromatography using HEK293 extracts, immunoblotting, UV cross-linking. EMSA with recombinant protein.
hnRNP A1	AUUUUCCUUACAGGGUUUCAGACAAAAUCAAAAAG	-4	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	18794368	Chen HH, Chang JG, Lu RM, Peng TY, Tarn WY. (2008) The RNA binding protein hnRNP Q modulates the utilization of exon 7 in the survival motor neuron 2 (SMN2) gene. Mol Cell Biol. 28(22):6929-6938.		Sequences deriving from SMN1 [6606], SMN2 [6607]. Constructs of wt and mutated SMN2 [6607] EX6 - INT6 - EX7 - INT7 - EX8.	In vivo splicing in HEK293.	RNA affinity chromatography using HeLa NE, MALDI-TOF. RNA affinity chromatography using HEK293 extracts, immunoblotting, UV cross-linking. EMSA with recombinant protein.
hnRNP A1	GAAUGGCCGGAGGAGAUUCAGCCUGA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	20120036	Homolova K, Zavadakova P, Doktor TK, Schroeder LD, Kozich V, Andresen BS. (2010) The deep intronic c.903+469T>C mutation in the MTRR gene creates an SF2/ASF binding exonic splicing enhancer, which leads to pseudoexon activation and causes the cblE type of homocystinuria. Hum Mutat. 31(4):437-444.		Sequences deriving from wt or mutated MTRR [4552]. Constructs of wt or mutated HBB [3043]_EX1 - MTRR [4552]_INT6 - HBB [3043]_EX2 and Tat [155871]_EX1 - MTRR [4552]_INT6 - Tat [155871]_EX2.	In vivo splicing in HEK293, protein overexpression and siRNA knockdown	Pulldown and Western blotting with HeLa NE
hnRNP A1	GAAUGGCUGGAGGAGAUUCAGCCUGA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	20120036	Homolova K, Zavadakova P, Doktor TK, Schroeder LD, Kozich V, Andresen BS. (2010) The deep intronic c.903+469T>C mutation in the MTRR gene creates an SF2/ASF binding exonic splicing enhancer, which leads to pseudoexon activation and causes the cblE type of homocystinuria. Hum Mutat. 31(4):437-444.		Sequences deriving from wt or mutated MTRR [4552]. Constructs of wt or mutated HBB [3043]_EX1 - MTRR [4552]_INT6 - HBB [3043]_EX2 and Tat [155871]_EX1 - MTRR [4552]_INT6 - Tat [155871]_EX2.	In vivo splicing in HEK293, protein overexpression and siRNA knockdown	Pulldown and Western blotting with HeLa NE
hnRNP A1	UUUAGUCAGCCUUAUAGCUAA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	22434879	Zubovic L, Baralle M, Baralle FE. (2012) Mutually exclusive splicing regulates the Nav 1.6 sodium channel function through a combinatorial mechanism that involves three distinct splicing regulatory elements and their ligands. Nucleic Acids Res. 40(13):6255-6269.		Sequences deriving from SCN8A [6334]. Constructs of wt or mutated SCN8A [6334] EX17 - INT17 - EX18N - INT18 - EX18A - INT18 - EX19	In vivo splicing in HeLa	Pulldown, mass spectrophotometry, western blot and siRNA knockdown with HeLa.
hnRNP A1	GAGGAAG	5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	23430061	Oh HK, Lee E, Jang HN, Lee J, Moon H, Sheng Z, Jun Y, Loh TJ, Cho S, Zhou J, Green MR, Zheng X, Shen H. (2013) hnRNP A1 contacts exon 5 to promote exon 6 inclusion of apoptotic Fas gene. Apoptosis. 18(7):825-835.		Constructs of wt or mutated FAS [355] EX5 - INT5 - EX6 - INT6 - EX7. Synthesized sequences.	In vivo splicing in HeLa, HCT-116, MDA-MB-231.	In vivo splicing using wt and mutated sequences in MDA-MB-231, HeLa, HCT-116
hnRNP A1	CAAAGAGGAA	5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	23430061	Oh HK, Lee E, Jang HN, Lee J, Moon H, Sheng Z, Jun Y, Loh TJ, Cho S, Zhou J, Green MR, Zheng X, Shen H. (2013) hnRNP A1 contacts exon 5 to promote exon 6 inclusion of apoptotic Fas gene. Apoptosis. 18(7):825-835.		Constructs of wt or mutated FAS [355] EX5 - INT5 - EX6 - INT6 - EX7. Synthesized sequences.	In vivo splicing in HeLa, HCT-116, MDA-MB-231.	In vivo splicing using wt and mutated sequences in MDA-MB-231, HeLa, HCT-116
hnRNP A1	AGAUAU	-8	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	24452013	Choudhury R, Roy SG, Tsai YS, Tripathy A, Graves LM, Wang Z. (2014) The splicing activator DAZAP1 integrates splicing control into MEK/Erk-regulated cell proliferation and migration. Nat Commun. 5:3078.		Synthetic sequences. Construct of Chinese hamster Dhfr [100689028] GFP - INT1 - EX2 - INT2 - GFP where INT2 contains a MS2 hairpin.	In vivo splicing in HEK-293T using MS2-DAZAP1 fusion proteins.	RNA affinity chromatography and SPR analysis with recombinant protein.
hnRNP A1	AAUUUA	-10	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	24452013	Choudhury R, Roy SG, Tsai YS, Tripathy A, Graves LM, Wang Z. (2014) The splicing activator DAZAP1 integrates splicing control into MEK/Erk-regulated cell proliferation and migration. Nat Commun. 5:3078.		Synthetic sequences. Construct of Chinese hamster Dhfr [100689028] GFP - INT1 - EX2 - INT2 - GFP where INT2 contains a MS2 hairpin.	In vivo splicing in HEK-293T using MS2-DAZAP1 fusion proteins.	RNA affinity chromatography and SPR analysis with recombinant protein.
hnRNP A1	AGUAGG	-10	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	24452013	Choudhury R, Roy SG, Tsai YS, Tripathy A, Graves LM, Wang Z. (2014) The splicing activator DAZAP1 integrates splicing control into MEK/Erk-regulated cell proliferation and migration. Nat Commun. 5:3078.		Synthetic sequences. Construct of Chinese hamster Dhfr [100689028] GFP - INT1 - EX2 - INT2 - GFP where INT2 contains a MS2 hairpin.	In vivo splicing in HEK-293T using MS2-DAZAP1 fusion proteins.	RNA affinity chromatography and SPR analysis with recombinant protein.
hnRNP A1	UUCGAUUAGUGAA	-10	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	24628426	Rollins C, Levengood JD, Rife BD, Salemi M, Tolbert BS. (2014) Thermodynamic and Phylogenetic Insights into hnRNP A1 Recognition of the HIV-1 Exon Splicing Silencer 3 Element. Biochemistry. 53(13):2172-2184.	RNA secondary structure is essential for hnRNP A1 binding. In fact only the central tract of this motif is not sufficient.	Sequences deriving from HIV-1 Tat [155871]		Calorimetric titrations, saturation transfer difference NMR, chemical shift using wt and mutant sequences.
hnRNP A1	UUCCAUUAGUGAA	-4	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	24628426	Rollins C, Levengood JD, Rife BD, Salemi M, Tolbert BS. (2014) Thermodynamic and Phylogenetic Insights into hnRNP A1 Recognition of the HIV-1 Exon Splicing Silencer 3 Element. Biochemistry. 53(13):2172-2184.	RNA secondary structure is essential for hnRNP A1 binding. In fact only the central tract of this motif is not sufficient.	Sequences deriving from HIV-1 Tat [155871]		Calorimetric titrations, saturation transfer difference NMR, chemical shift using wt and mutant sequences.
hnRNP A1	UUCGCUUAGUGAA	-7	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	24628426	Rollins C, Levengood JD, Rife BD, Salemi M, Tolbert BS. (2014) Thermodynamic and Phylogenetic Insights into hnRNP A1 Recognition of the HIV-1 Exon Splicing Silencer 3 Element. Biochemistry. 53(13):2172-2184.	RNA secondary structure is essential for hnRNP A1 binding. In fact only the central tract of this motif is not sufficient.	Sequences deriving from HIV-1 Tat [155871]		Calorimetric titrations, saturation transfer difference NMR, chemical shift using wt and mutant sequences.
hnRNP A1	UUCGACUAGUGAA	-10	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	24628426	Rollins C, Levengood JD, Rife BD, Salemi M, Tolbert BS. (2014) Thermodynamic and Phylogenetic Insights into hnRNP A1 Recognition of the HIV-1 Exon Splicing Silencer 3 Element. Biochemistry. 53(13):2172-2184.	RNA secondary structure is essential for hnRNP A1 binding. In fact only the central tract of this motif is not sufficient.	Sequences deriving from HIV-1 Tat [155871]		Calorimetric titrations, saturation transfer difference NMR, chemical shift using wt and mutant sequences.
hnRNP A1	UUCGAUCAGUGAA	-7	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	24628426	Rollins C, Levengood JD, Rife BD, Salemi M, Tolbert BS. (2014) Thermodynamic and Phylogenetic Insights into hnRNP A1 Recognition of the HIV-1 Exon Splicing Silencer 3 Element. Biochemistry. 53(13):2172-2184.	RNA secondary structure is essential for hnRNP A1 binding. In fact only the central tract of this motif is not sufficient.	Sequences deriving from HIV-1 Tat [155871]		Calorimetric titrations, saturation transfer difference NMR, chemical shift using wt and mutant sequences.
hnRNP A1	UUCGAUUCGUGAA	-2	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	24628426	Rollins C, Levengood JD, Rife BD, Salemi M, Tolbert BS. (2014) Thermodynamic and Phylogenetic Insights into hnRNP A1 Recognition of the HIV-1 Exon Splicing Silencer 3 Element. Biochemistry. 53(13):2172-2184.	RNA secondary structure is essential for hnRNP A1 binding. In fact only the central tract of this motif is not sufficient.	Sequences deriving from HIV-1 Tat [155871]		Calorimetric titrations, saturation transfer difference NMR, chemical shift using wt and mutant sequences.
hnRNP A1	UUCGAUUACUGAA	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	24628426	Rollins C, Levengood JD, Rife BD, Salemi M, Tolbert BS. (2014) Thermodynamic and Phylogenetic Insights into hnRNP A1 Recognition of the HIV-1 Exon Splicing Silencer 3 Element. Biochemistry. 53(13):2172-2184.	RNA secondary structure is essential for hnRNP A1 binding. In fact only the central tract of this motif is not sufficient.	Sequences deriving from HIV-1 Tat [155871]		Calorimetric titrations, saturation transfer difference NMR, chemical shift using wt and mutant sequences.
hnRNP A1	UUCCAUUACUGAA	-3	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	24628426	Rollins C, Levengood JD, Rife BD, Salemi M, Tolbert BS. (2014) Thermodynamic and Phylogenetic Insights into hnRNP A1 Recognition of the HIV-1 Exon Splicing Silencer 3 Element. Biochemistry. 53(13):2172-2184.	RNA secondary structure is essential for hnRNP A1 binding. In fact only the central tract of this motif is not sufficient.	Sequences deriving from HIV-1 Tat [155871]		Calorimetric titrations, saturation transfer difference NMR, chemical shift using wt and mutant sequences.
hnRNP A1	UUCGCUUCGUGAA	-1	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	24628426	Rollins C, Levengood JD, Rife BD, Salemi M, Tolbert BS. (2014) Thermodynamic and Phylogenetic Insights into hnRNP A1 Recognition of the HIV-1 Exon Splicing Silencer 3 Element. Biochemistry. 53(13):2172-2184.	RNA secondary structure is essential for hnRNP A1 binding. In fact only the central tract of this motif is not sufficient.	Sequences deriving from HIV-1 Tat [155871]		Calorimetric titrations, saturation transfer difference NMR, chemical shift using wt and mutant sequences.
hnRNP A1	UUCGACCAGUGAA	-9	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	24628426	Rollins C, Levengood JD, Rife BD, Salemi M, Tolbert BS. (2014) Thermodynamic and Phylogenetic Insights into hnRNP A1 Recognition of the HIV-1 Exon Splicing Silencer 3 Element. Biochemistry. 53(13):2172-2184.	RNA secondary structure is essential for hnRNP A1 binding. In fact only the central tract of this motif is not sufficient.	Sequences deriving from HIV-1 Tat [155871]		Calorimetric titrations, saturation transfer difference NMR, chemical shift using wt and mutant sequences.
hnRNP A1	GGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCC	-5	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	24371143	Zamiri B, Reddy K, Macgregor RB Jr, Pearson CE. (2014) TMPyP4 porphyrin distorts RNA G-quadruplex structures of the disease-associated r(GGGGCC)n repeat of the C9orf72 gene and blocks interaction of RNA-binding proteins. J Biol Chem. 289(8):4653-4659.		Synthetic sequences.		EMSA with recombinant protein.
hnRNP A1	AAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACC	-1	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP A1	GCAGUGACGACGCGCUGCUCAAGAACUACGGUCUGCUCUCCUGCUUCCGGAAGGACCUGCAUAAGACGGAGACGUACCUGAGGGUCAUGAAGUGCCGCCGCUUCGGGGAGGCCAG	-2	Gene Name and Synonymous: HNRNPA1, heterogeneous nuclear ribonucleoprotein A1, HNRPA1, MGC102835. hnRNP A1 carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:8521471).	8276242	Sun Q, Mayeda A, Hampson RK, Krainer AR, Rottman FM. (1993) General splicing factor SF2/ASF promotes alternative splicing by binding to an exonic splicing enhancer. Genes Dev. 7(12B):2598-2608.		Construct of cow GH1 [280804] EX4 - INT4 - EX5	In vitro splicing in HeLa nuclear extract, using also competing RNAs or protein excess	UV crosslinking and immunoprecipitation in HeLa nuclear extract, UV crosslinking with purified HeLa protein or recombinant protein
hnRNP A2/B1	GCCAAGGAGCC	-5	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	11024030	Shan J, Moran-Jones K, Munro TP, Kidd GJ, Winzor DJ, Hoek KS, Smith R. (2000) Binding of an RNA trafficking response element to heterogeneous nuclear ribonucleoproteins A1 and A2. J Biol Chem. 275(49): 38286-38295.		synthesized oligos		UV crosslink, EMSA, IAsys resonant mirror biosensor.
hnRNP A2/B1	AGAAC	-5	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	18503770	Skoko N, Baralle M, Buratti E, Baralle FE. (2008) The pathological splicing mutation c.6792C>G in NF1 exon 37 causes a change of tenancy between antagonistic splicing factors. FEBS Lett. 582(15):2231-2236.		Constructs spanning from NF1 [4763] EX34 to EX38 for in vivo splicing. Sequences of NF1 EX37.	In vivo splicing in HeLa, siRNA.	UV crosslink, EMSA, and pull-down assays with HeLa nuclear extracts.
hnRNP A2/B1	CUAGACUAGA	-4	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	10406810	Caputi M, Mayeda A, Krainer AR, Zahler AM. (1999) hnRNP A/B proteins are required for inhibition of HIV-1 pre-mRNA splicing. EMBO J. 18(14):4060-4067.		Constructs and mutants of HIV-1 tat [155871] EX1 - INT1 - EX2	In vitro splicing with HeLa nuclear extracts, nuclear extract depletion/reconsitution assay.	RNA affinity chromatography, immunoblotting.
hnRNP A2/B1	CAAGCACCGAACCCGCAACUG	-5	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	11024030	Shan J, Moran-Jones K, Munro TP, Kidd GJ, Winzor DJ, Hoek KS, Smith R. (2000) Binding of an RNA trafficking response element to heterogeneous nuclear ribonucleoproteins A1 and A2. J Biol Chem. 275(49): 38286-38295.		synthesized oligos		UV crosslink, EMSA, IAsys resonant mirror biosensor.
hnRNP A2/B1	GCGAAGGAGCC	-5	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	11024030	Shan J, Moran-Jones K, Munro TP, Kidd GJ, Winzor DJ, Hoek KS, Smith R. (2000) Binding of an RNA trafficking response element to heterogeneous nuclear ribonucleoproteins A1 and A2. J Biol Chem. 275(49): 38286-38295.		synthesized oligos		UV crosslink, EMSA, IAsys resonant mirror biosensor.
hnRNP A2/B1	GCCAAGAAGCC	-5	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	11024030	Shan J, Moran-Jones K, Munro TP, Kidd GJ, Winzor DJ, Hoek KS, Smith R. (2000) Binding of an RNA trafficking response element to heterogeneous nuclear ribonucleoproteins A1 and A2. J Biol Chem. 275(49): 38286-38295.		synthesized oligos		UV crosslink, EMSA, IAsys resonant mirror biosensor.
hnRNP A2/B1	GCCAAGGGGCC	-2	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	11024030	Shan J, Moran-Jones K, Munro TP, Kidd GJ, Winzor DJ, Hoek KS, Smith R. (2000) Binding of an RNA trafficking response element to heterogeneous nuclear ribonucleoproteins A1 and A2. J Biol Chem. 275(49): 38286-38295.		synthesized oligos		UV crosslink, EMSA, IAsys resonant mirror biosensor.
hnRNP A2/B1	GCCAAGGAACC	-2	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	11024030	Shan J, Moran-Jones K, Munro TP, Kidd GJ, Winzor DJ, Hoek KS, Smith R. (2000) Binding of an RNA trafficking response element to heterogeneous nuclear ribonucleoproteins A1 and A2. J Biol Chem. 275(49): 38286-38295.		synthesized oligos		UV crosslink, EMSA, IAsys resonant mirror biosensor.
hnRNP A2/B1	GAAGAAGAAGAAGAAGAAGAAGAAGAAGAA	-5	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	18597733	Baralle M, Pastor T, Bussani E, Pagani F. (2008) Influence of Friedreich ataxia GAA noncoding repeat expansions on pre-mRNA processing. Am J Hum Genet. 83(1): 77-88.		Synthesized sequences.		Mass spectrometry, immunoblot analysis.
hnRNP A2/B1	UAGACA	-8	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	12833158	Kashima T, Manley JL. (2003) A negative element in SMN2 exon 7 inhibits splicing in spinal muscular atrophy. Nat Genet. 34(4): 460-463.		Constructs and mutants of SMN1 [6606] and SMN2 [6607] EX7.	In vivo splicing in HeLa.	UV crosslink, SDS-PAGE, immunoprecipitation, siRNA and Western blot.
hnRNP A2/B1	AUAGCA	-9	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	12426391	Hou VC, Lersch R, Gee SL, Ponthier JL, Lo AJ, Wu M, Turck CW, Koury M, Krainer AR, Mayeda A, Conboy JG. (2002) Decrease in hnRNP A/B expression during erythropoiesis mediates a pre-mRNA splicing switch. EMBO J. 21(22):6195-6204.		Construct of murine Epb4.1 [269587] EX15 - INT15 - EX16 - INT16 - EX17	In vitro splicing assay with recombinant protein. In vivo splicing assay in HeLa cells.	RNA affinity isolation from HeLa nuclear extract using WT and mutated RNAs. Immunoblotting.
hnRNP A2/B1	UUUAUA	-7	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	12426391	Hou VC, Lersch R, Gee SL, Ponthier JL, Lo AJ, Wu M, Turck CW, Koury M, Krainer AR, Mayeda A, Conboy JG. (2002) Decrease in hnRNP A/B expression during erythropoiesis mediates a pre-mRNA splicing switch. EMBO J. 21(22):6195-6204.		Construct of murine Epb4.1 [269587] EX15 - INT15 - EX16 - INT16 - EX17	In vitro splicing assay with recombinant protein. In vivo splicing assay in HeLa cells.	RNA affinity isolation from HeLa nuclear extract using WT and mutated RNAs. Immunoblotting.
hnRNP A2/B1	AUUUAA	-2	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	12426391	Hou VC, Lersch R, Gee SL, Ponthier JL, Lo AJ, Wu M, Turck CW, Koury M, Krainer AR, Mayeda A, Conboy JG. (2002) Decrease in hnRNP A/B expression during erythropoiesis mediates a pre-mRNA splicing switch. EMBO J. 21(22):6195-6204.		Construct of murine Epb4.1 [269587] EX15 - INT15 - EX16 - INT16 - EX17	In vitro splicing assay with recombinant protein. In vivo splicing assay in HeLa cells.	RNA affinity isolation from HeLa nuclear extract using WT and mutated RNAs. Immunoblotting.
hnRNP A2/B1	UUAGACUCUCCUUUUGGAUACCUAGAUGUUUUAACA	-5	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
hnRNP A2/B1	UUAGACUCUCCUUUUGCAUACCUAGAUGUUUUAACA	-5	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
hnRNP A2/B1	UUAGACUCUCCUUUUGGAUUCCUAGAUGUUUUAACA	-5	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
hnRNP A2/B1	UUAGACUCCCCUUUUGGAUACCUAGAUGUUUUAACA	-5	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
hnRNP A2/B1	UUAGACUCUCCUUUUGGGUACCUAGAUGUUUUAACA	-5	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
hnRNP A2/B1	UUAGACUCUCCUUUUGGAUAUCUAGAUGUUUUAACA	-5	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
hnRNP A2/B1	CUAGUAGAAACUAAACUUA	-5	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	12060656	Hutchison S, LeBel C, Blanchette M, Chabot B. (2002) Distinct sets of adjacent heterogeneous nuclear ribonucleoprotein (hnRNP) A1/A2 binding sites control 5' splice site selection in the hnRNP A1 mRNA precursor. J Biol Chem. 277(33):29745-29752.		Constructs of wt and mutated mouse Hnrnpa1 [15382] EX7 - INT7 - EX7B - INT7 - Ad_EX	In vitro splicing in HeLa NE	EMSA with HeLa NE and recombinant protein. Depletion/reconstitution assay.
hnRNP A2/B1	GAAGUAGAAACUAAACUUA	-5	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	12060656	Hutchison S, LeBel C, Blanchette M, Chabot B. (2002) Distinct sets of adjacent heterogeneous nuclear ribonucleoprotein (hnRNP) A1/A2 binding sites control 5' splice site selection in the hnRNP A1 mRNA precursor. J Biol Chem. 277(33):29745-29752.		Constructs of wt and mutated mouse Hnrnpa1 [15382] EX7 - INT7 - EX7B - INT7 - Ad_EX	In vitro splicing in HeLa NE	EMSA with HeLa NE and recombinant protein. Depletion/reconstitution assay.
hnRNP A2/B1	CUUCUAGAAACUAAACUUA	-5	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	12060656	Hutchison S, LeBel C, Blanchette M, Chabot B. (2002) Distinct sets of adjacent heterogeneous nuclear ribonucleoprotein (hnRNP) A1/A2 binding sites control 5' splice site selection in the hnRNP A1 mRNA precursor. J Biol Chem. 277(33):29745-29752.		Constructs of wt and mutated mouse Hnrnpa1 [15382] EX7 - INT7 - EX7B - INT7 - Ad_EX	In vitro splicing in HeLa NE	EMSA with HeLa NE and recombinant protein. Depletion/reconstitution assay.
hnRNP A2/B1	CUAGUACUAACUAAACUUA	-5	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	12060656	Hutchison S, LeBel C, Blanchette M, Chabot B. (2002) Distinct sets of adjacent heterogeneous nuclear ribonucleoprotein (hnRNP) A1/A2 binding sites control 5' splice site selection in the hnRNP A1 mRNA precursor. J Biol Chem. 277(33):29745-29752.		Constructs of wt and mutated mouse Hnrnpa1 [15382] EX7 - INT7 - EX7B - INT7 - Ad_EX	In vitro splicing in HeLa NE	EMSA with HeLa NE and recombinant protein. Depletion/reconstitution assay.
hnRNP A2/B1	CUAGUAGAUUCUAAACUUA	-5	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	12060656	Hutchison S, LeBel C, Blanchette M, Chabot B. (2002) Distinct sets of adjacent heterogeneous nuclear ribonucleoprotein (hnRNP) A1/A2 binding sites control 5' splice site selection in the hnRNP A1 mRNA precursor. J Biol Chem. 277(33):29745-29752.		Constructs of wt and mutated mouse Hnrnpa1 [15382] EX7 - INT7 - EX7B - INT7 - Ad_EX	In vitro splicing in HeLa NE	EMSA with HeLa NE and recombinant protein. Depletion/reconstitution assay.
hnRNP A2/B1	CUAGUAGAAACUAUUCUUA	-5	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	12060656	Hutchison S, LeBel C, Blanchette M, Chabot B. (2002) Distinct sets of adjacent heterogeneous nuclear ribonucleoprotein (hnRNP) A1/A2 binding sites control 5' splice site selection in the hnRNP A1 mRNA precursor. J Biol Chem. 277(33):29745-29752.		Constructs of wt and mutated mouse Hnrnpa1 [15382] EX7 - INT7 - EX7B - INT7 - Ad_EX	In vitro splicing in HeLa NE	EMSA with HeLa NE and recombinant protein. Depletion/reconstitution assay.
hnRNP A2/B1	GAUCUAGAAACUAAACUUA	-5	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	12060656	Hutchison S, LeBel C, Blanchette M, Chabot B. (2002) Distinct sets of adjacent heterogeneous nuclear ribonucleoprotein (hnRNP) A1/A2 binding sites control 5' splice site selection in the hnRNP A1 mRNA precursor. J Biol Chem. 277(33):29745-29752.		Constructs of wt and mutated mouse Hnrnpa1 [15382] EX7 - INT7 - EX7B - INT7 - Ad_EX	In vitro splicing in HeLa NE	EMSA with HeLa NE and recombinant protein. Depletion/reconstitution assay.
hnRNP A2/B1	UAGGGAUAGGGUUAGGGA	-5	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	16157593	Buratti E, Brindisi A, Giombi M, Tisminetzky S, Ayala YM, Baralle FE. (2005) TDP-43 binds heterogeneous nuclear ribonucleoprotein A/B through its C-terminal tail: an important region for the inhibition of cystic fibrosis transmembrane conductance regulator exon 9 splicing. J Biol Chem. 280(45):37572-37584.		Synthesized sequences		EMSA with recombinant protein
hnRNP A2/B1	GCCAAGGAGCCAGAGAGCAUG	-7	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	16548521	Landsberg MJ, Moran-Jones K, Smith R. (2006) Molecular recognition of an RNA trafficking element by heterogeneous nuclear ribonucleoprotein A2. Biochemistry. 45(12):3943-3951.		Synthesized sequences		Pull-down assay, UV cross-linking, CD spectroscopy with recombinant protein
hnRNP A2/B1	CAGCAUUAUGAAAG	-10	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	18371932	Hua Y, Vickers TA, Okunola HL, Bennett CF, Krainer AR. (2008) Antisense masking of an hnRNP A1/A2 intronic splicing silencer corrects SMN2 splicing in transgenic mice. Am J Hum Genet. 82(4):834-848.		Sequences deriving from SMN2 [6607]. Constructs of SMN2 [6607] EX6 - INT6 - EX7 - INT7 - EX8.	In vitro splicing in HeLa NE and in vivo splicing in HEK293.	RNA-affinity chromatography, western blot with HeLa NE.
hnRNP A2/B1	CCGCAUUAUGAAAG	-5	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	18371932	Hua Y, Vickers TA, Okunola HL, Bennett CF, Krainer AR. (2008) Antisense masking of an hnRNP A1/A2 intronic splicing silencer corrects SMN2 splicing in transgenic mice. Am J Hum Genet. 82(4):834-848.		Sequences deriving from SMN2 [6607]. Constructs of SMN2 [6607] EX6 - INT6 - EX7 - INT7 - EX8.	In vitro splicing in HeLa NE and in vivo splicing in HEK293.	RNA-affinity chromatography, western blot with HeLa NE.
hnRNP A2/B1	CAGCAUUAUGAACG	-5	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	18371932	Hua Y, Vickers TA, Okunola HL, Bennett CF, Krainer AR. (2008) Antisense masking of an hnRNP A1/A2 intronic splicing silencer corrects SMN2 splicing in transgenic mice. Am J Hum Genet. 82(4):834-848.		Sequences deriving from SMN2 [6607]. Constructs of SMN2 [6607] EX6 - INT6 - EX7 - INT7 - EX8.	In vitro splicing in HeLa NE and in vivo splicing in HEK293.	RNA-affinity chromatography, western blot with HeLa NE.
hnRNP A2/B1	CCGCAUUAUGAACG	-1	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	18371932	Hua Y, Vickers TA, Okunola HL, Bennett CF, Krainer AR. (2008) Antisense masking of an hnRNP A1/A2 intronic splicing silencer corrects SMN2 splicing in transgenic mice. Am J Hum Genet. 82(4):834-848.		Sequences deriving from SMN2 [6607]. Constructs of SMN2 [6607] EX6 - INT6 - EX7 - INT7 - EX8.	In vitro splicing in HeLa NE and in vivo splicing in HEK293.	RNA-affinity chromatography, western blot with HeLa NE.
hnRNP A2/B1	UGCAGAUGCUUAGUUUGUGU	-8	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	18391021	Goina E, Skoko N, Pagani F. (2008) Binding of DAZAP1 and hnRNPA1/A2 to an exonic splicing silencer in a natural BRCA1 exon 18 mutant. Mol Cell Biol. 28(11):3850-3860.		Sequences deriving from FN1 [2335] and BRCA1 [672]. Constructs of wt and mutant BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19.	In vivo splicing in HeLa.	Pulldown assay, western blot with HeLa NE and EMSA with recombinant protein. siRNA.
hnRNP A2/B1	UGCAGAUGGUUAGUUUGUGU	-10	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	18391021	Goina E, Skoko N, Pagani F. (2008) Binding of DAZAP1 and hnRNPA1/A2 to an exonic splicing silencer in a natural BRCA1 exon 18 mutant. Mol Cell Biol. 28(11):3850-3860.		Sequences deriving from FN1 [2335] and BRCA1 [672]. Constructs of wt and mutant BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19.	In vivo splicing in HeLa.	Pulldown assay, western blot with HeLa NE and EMSA with recombinant protein. siRNA.
hnRNP A2/B1	GUAUCCUUCCCUGGCCGUGAUAGUAGAGCAGCAGGGCCAGGGGGGUGACACACC	-2	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	16308319	McNally LM, Yee L, McNally MT. (2006) Heterogeneous nuclear ribonucleoprotein H is required for optimal U11 small nuclear ribonucleoprotein binding to a retroviral RNA-processing control element: implications for U12-dependent RNA splicing. J Biol Chem. 281(5):2478-2488.		Sequences deriving from wt and mutated RSV NRS region, SCN4A [6329], NOP2 [4839]. Constructs of EX_[RSV NRS] - INT_[RSV NRS] - NOP2 [4839] INT - NOP2 [4839] EX. Constructs of SCN4A [6329] EX2 - INT2 - EX3. Constructs of NOP2 [4839] EX7 - INT7 - EX8.	In vivo splicing in HEK293	UV cross-linking, MALDI-TOF and western blot with HeLa NE
hnRNP A2/B1	CCAAGGAGCCAGAGAGCAUGG	-5	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	18480411	Raju CS, Goritz C, Nord Y, Hermanson O, Lopez-Iglesias C, Visa N, Castelo-Branco G, Percipalle P. (2008) In cultured oligodendrocytes the A/B-type hnRNP CBF-A accompanies MBP mRNA bound to mRNA trafficking sequences. Mol Biol Cell. 19(7):3008-3019.		Sequences deriving from mouse Mbp [17196].		Protein affinity purification and EMSA with HeLa NE, cytoplasmic or protein extracts
hnRNP A2/B1	AUUUUCCUUACAGGGUUUUAGACAAAAUCAAAAAG	-5	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	18794368	Chen HH, Chang JG, Lu RM, Peng TY, Tarn WY. (2008) The RNA binding protein hnRNP Q modulates the utilization of exon 7 in the survival motor neuron 2 (SMN2) gene. Mol Cell Biol. 28(22):6929-6938.		Sequences deriving from SMN1 [6606], SMN2 [6607]. Constructs of wt and mutated SMN2 [6607] EX6 - INT6 - EX7 - INT7 - EX8.	In vivo splicing in HEK293.	RNA affinity chromatography using HeLa NE, MALDI-TOF. RNA affinity chromatography using HEK293 extracts, immunoblotting, UV cross-linking. EMSA with recombinant protein.
hnRNP A2/B1	UUUAGUCAGCCUUAUAGCUAA	-5	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	22434879	Zubovic L, Baralle M, Baralle FE. (2012) Mutually exclusive splicing regulates the Nav 1.6 sodium channel function through a combinatorial mechanism that involves three distinct splicing regulatory elements and their ligands. Nucleic Acids Res. 40(13):6255-6269.		Sequences deriving from SCN8A [6334]. Constructs of wt or mutated SCN8A [6334] EX17 - INT17 - EX18N - INT18 - EX18A - INT18 - EX19	In vivo splicing in HeLa	Pulldown, mass spectrophotometry, western blot and siRNA knockdown with HeLa.
hnRNP A2/B1	AGAUAU	-1	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	24452013	Choudhury R, Roy SG, Tsai YS, Tripathy A, Graves LM, Wang Z. (2014) The splicing activator DAZAP1 integrates splicing control into MEK/Erk-regulated cell proliferation and migration. Nat Commun. 5:3078.		Synthetic sequences. Construct of Chinese hamster Dhfr [100689028] GFP - INT1 - EX2 - INT2 - GFP where INT2 contains a MS2 hairpin.	In vivo splicing in HEK-293T using MS2-DAZAP1 fusion proteins.	RNA affinity chromatography and SPR analysis with recombinant protein.
hnRNP A2/B1	AAUUUA	-5	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	24452013	Choudhury R, Roy SG, Tsai YS, Tripathy A, Graves LM, Wang Z. (2014) The splicing activator DAZAP1 integrates splicing control into MEK/Erk-regulated cell proliferation and migration. Nat Commun. 5:3078.		Synthetic sequences. Construct of Chinese hamster Dhfr [100689028] GFP - INT1 - EX2 - INT2 - GFP where INT2 contains a MS2 hairpin.	In vivo splicing in HEK-293T using MS2-DAZAP1 fusion proteins.	RNA affinity chromatography and SPR analysis with recombinant protein.
hnRNP A2/B1	AGUAGG	-9	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	24452013	Choudhury R, Roy SG, Tsai YS, Tripathy A, Graves LM, Wang Z. (2014) The splicing activator DAZAP1 integrates splicing control into MEK/Erk-regulated cell proliferation and migration. Nat Commun. 5:3078.		Synthetic sequences. Construct of Chinese hamster Dhfr [100689028] GFP - INT1 - EX2 - INT2 - GFP where INT2 contains a MS2 hairpin.	In vivo splicing in HEK-293T using MS2-DAZAP1 fusion proteins.	RNA affinity chromatography and SPR analysis with recombinant protein.
hnRNP A2/B1	GGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCC	-10	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP A2/B1	AAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACC	-1	Gene Name and Synonymous: HNRNPA2B1, heterogeneous nuclear ribonucleoprotein A2/B1, HNRPA2B1, RNPA2, HNRPA2, HNRPB1, SNRPB1, HNRNPA2, HNRNPB1, FLJ22720, DKFZp779B0244. hnRNP A2 is involved in cytoplasmic RNA transport (PMID:11024030).	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP A3	CCAAGGAGCCAGAGAGCAUGG	-5	Gene Name and Synonymous: HNRNPA3, heterogeneous nuclear ribonucleoprotein A3, FBRNP, HNRPA3, D10S102, MGC138232, MGC142030, 2610510D13Rik.	18480411	Raju CS, Goritz C, Nord Y, Hermanson O, Lopez-Iglesias C, Visa N, Castelo-Branco G, Percipalle P. (2008) In cultured oligodendrocytes the A/B-type hnRNP CBF-A accompanies MBP mRNA bound to mRNA trafficking sequences. Mol Biol Cell. 19(7):3008-3019.		Sequences deriving from mouse Mbp [17196].		Protein affinity purification and EMSA with HeLa NE, cytoplasmic or protein extracts
hnRNP A3	AUUUUCCUUACAGGGUUUUAGACAAAAUCAAAAAG	-5	Gene Name and Synonymous: HNRNPA3, heterogeneous nuclear ribonucleoprotein A3, FBRNP, HNRPA3, D10S102, MGC138232, MGC142030, 2610510D13Rik.	18794368	Chen HH, Chang JG, Lu RM, Peng TY, Tarn WY. (2008) The RNA binding protein hnRNP Q modulates the utilization of exon 7 in the survival motor neuron 2 (SMN2) gene. Mol Cell Biol. 28(22):6929-6938.		Sequences deriving from SMN1 [6606], SMN2 [6607]. Constructs of wt and mutated SMN2 [6607] EX6 - INT6 - EX7 - INT7 - EX8.	In vivo splicing in HEK293.	RNA affinity chromatography using HeLa NE, MALDI-TOF. RNA affinity chromatography using HEK293 extracts, immunoblotting, UV cross-linking. EMSA with recombinant protein.
hnRNP A3	GGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCC	-10	Gene Name and Synonymous: HNRNPA3, heterogeneous nuclear ribonucleoprotein A3, FBRNP, HNRPA3, D10S102, MGC138232, MGC142030, 2610510D13Rik.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP A3	AAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACC	-1	Gene Name and Synonymous: HNRNPA3, heterogeneous nuclear ribonucleoprotein A3, FBRNP, HNRPA3, D10S102, MGC138232, MGC142030, 2610510D13Rik.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP C	AUUUA	-5	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, C2, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 Tetramer composed of 3 copies of isoform C1 and 1 copy of isoform C2. hnRNP C proteins are restricted to the nucleus because they bear a nuclear retention sequence (NRS), (PMID:8830767).	8473331	Hamilton BJ, Nagy E, Malter JS, Arrick BA, Rigby WF. (1993) Association of heterogeneous nuclear ribonucleoprotein A1 and C proteins with reiterated AUUUA sequences. J Biol Chem. 268(12): 8881-7.		Partial sequence of colony stimulating factor 2 CSF2 [1437] 3'UTR.		UV crosslink and immunoprecipitation with cytoplasmic lysates of lymphocytes.
hnRNP C	AGUAUUUUUGUGGA	-10	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, C2, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 Tetramer composed of 3 copies of isoform C1 and 1 copy of isoform C2. hnRNP C proteins are restricted to the nucleus because they bear a nuclear retention sequence (NRS), (PMID:8830767).	9649627	Soltaninassab SR, McAfee JG, Shahied-Milam L, LeStourgeon WM. (1998) Oligonucleotide binding specificities of the hnRNP C protein tetramer. Nucleic Acids Res. 26(14): 3410-3417.	hnRNP C ha no affinity for polypyrimidine tracts of INT1 of the adenovirus-2 major late transcript, for adenovirus-2 oncoprotein E1A 3' splice site, for consensus polypyrimidine tract for U2AF65, for INT2 of human a-tropomyosin (PTB binding site), for (AUUUA)4 repeats and for r(U)20.	synthesized oligos		Affinity assessed by fluorescence spectroscopy of purified protein in competition binding assay under equilibrium conditions.
hnRNP C	GGGGGGGGGGGGGGGGGGGG	-10	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, C2, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 Tetramer composed of 3 copies of isoform C1 and 1 copy of isoform C2. hnRNP C proteins are restricted to the nucleus because they bear a nuclear retention sequence (NRS), (PMID:8830767).	9649627	Soltaninassab SR, McAfee JG, Shahied-Milam L, LeStourgeon WM. (1998) Oligonucleotide binding specificities of the hnRNP C protein tetramer. Nucleic Acids Res. 26(14): 3410-3417.	hnRNP C ha no affinity for polypyrimidine tracts of INT1 of the adenovirus-2 major late transcript, for adenovirus-2 oncoprotein E1A 3' splice site, for consensus polypyrimidine tract for U2AF65, for INT2 of human a-tropomyosin (PTB binding site), for (AUUUA)4 repeats and for r(U)20.	synthesized oligos		Affinity assessed by fluorescence spectroscopy of purified protein in competition binding assay under equilibrium conditions.
hnRNP C	AGUAGGGGGGUGGA	-8	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, C2, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 Tetramer composed of 3 copies of isoform C1 and 1 copy of isoform C2. hnRNP C proteins are restricted to the nucleus because they bear a nuclear retention sequence (NRS), (PMID:8830767).	9649627	Soltaninassab SR, McAfee JG, Shahied-Milam L, LeStourgeon WM. (1998) Oligonucleotide binding specificities of the hnRNP C protein tetramer. Nucleic Acids Res. 26(14): 3410-3417.	hnRNP C ha no affinity for polypyrimidine tracts of INT1 of the adenovirus-2 major late transcript, for adenovirus-2 oncoprotein E1A 3' splice site, for consensus polypyrimidine tract for U2AF65, for INT2 of human a-tropomyosin (PTB binding site), for (AUUUA)4 repeats and for r(U)20.	synthesized oligos		Affinity assessed by fluorescence spectroscopy of purified protein in competition binding assay under equilibrium conditions.
hnRNP C	GAUCACUUGUGUCAACACAG	-8	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, C2, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 Tetramer composed of 3 copies of isoform C1 and 1 copy of isoform C2. hnRNP C proteins are restricted to the nucleus because they bear a nuclear retention sequence (NRS), (PMID:8830767).	9649627	Soltaninassab SR, McAfee JG, Shahied-Milam L, LeStourgeon WM. (1998) Oligonucleotide binding specificities of the hnRNP C protein tetramer. Nucleic Acids Res. 26(14): 3410-3417.	hnRNP C ha no affinity for polypyrimidine tracts of INT1 of the adenovirus-2 major late transcript, for adenovirus-2 oncoprotein E1A 3' splice site, for consensus polypyrimidine tract for U2AF65, for INT2 of human a-tropomyosin (PTB binding site), for (AUUUA)4 repeats and for r(U)20.	synthesized oligos		Affinity assessed by fluorescence spectroscopy of purified protein in competition binding assay under equilibrium conditions.
hnRNP C	AUCGCUUCUCGGCCUUUUGGCUAAGAUCA	-5	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, C2, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 Tetramer composed of 3 copies of isoform C1 and 1 copy of isoform C2. hnRNP C proteins are restricted to the nucleus because they bear a nuclear retention sequence (NRS), (PMID:8830767).	8798770	Temsamani J, Pederson T. (1996) The C-group heterogeneous nuclear ribonucleoprotein proteins bind to the 5' stem-loop of the U2 small nuclear ribonucleoprotein particle. J Biol Chem. 271(40): 24922-24926.	hnRNP C han no affinity to poly(A), poly(C) and U1 RNA. Stem contributes to the binding.	Sequences of U2 snRNA [6066] and homopolymers		UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
hnRNP C	UUUUUUU	-7	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, C2, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 Tetramer composed of 3 copies of isoform C1 and 1 copy of isoform C2. hnRNP C proteins are restricted to the nucleus because they bear a nuclear retention sequence (NRS), (PMID:8830767).	8798770	Temsamani J, Pederson T. (1996) The C-group heterogeneous nuclear ribonucleoprotein proteins bind to the 5' stem-loop of the U2 small nuclear ribonucleoprotein particle. J Biol Chem. 271(40): 24922-24926.	hnRNP C han no affinity to poly(A), poly(C) and U1 RNA. Stem contributes to the binding.	Sequences of U2 snRNA [6066] and homopolymers		UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
hnRNP C	UGGAUUUUUUUCGGGUA	-5	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, C2, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 Tetramer composed of 3 copies of isoform C1 and 1 copy of isoform C2. hnRNP C proteins are restricted to the nucleus because they bear a nuclear retention sequence (NRS), (PMID:8830767).	12509468	Kim JH, Paek KY, Choi K, Kim TD, Hahm B, Kim KT, Jang SK. (2003) Heterogeneous nuclear ribonucleoprotein C modulates translation of c-myc mRNA in a cell cycle phase-dependent manner. Mol Cell Biol. 23(2):708-720.		Synthesized sequences.		UV cross-linking, Immunoprecipitation, deletion assay
hnRNP C	GGGGGGG	-5	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, C2, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 Tetramer composed of 3 copies of isoform C1 and 1 copy of isoform C2. hnRNP C proteins are restricted to the nucleus because they bear a nuclear retention sequence (NRS), (PMID:8830767).	12509468	Kim JH, Paek KY, Choi K, Kim TD, Hahm B, Kim KT, Jang SK. (2003) Heterogeneous nuclear ribonucleoprotein C modulates translation of c-myc mRNA in a cell cycle phase-dependent manner. Mol Cell Biol. 23(2):708-720.		Synthesized sequences.		UV cross-linking, Immunoprecipitation, deletion assay
hnRNP C	UCCCUUUUUUUUCCACAG	-5	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, C2, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 Tetramer composed of 3 copies of isoform C1 and 1 copy of isoform C2. hnRNP C proteins are restricted to the nucleus because they bear a nuclear retention sequence (NRS), (PMID:8830767).	2533575	Garcia-Blanco MA, Jamison SF, Sharp PA. (1989) Identification and purification of a 62,000-dalton protein that binds specifically to the polypyrimidine tract of introns. Genes Dev. 3(12A):1874-1886.		Synthesized sequences		UV cross-linking, immunoprecipitation in HeLa
hnRNP C	UCUUUCCUUCUUUUUUCCUUUCUUUUCCUUCCUUCUUUAAU	-5	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, C2, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 Tetramer composed of 3 copies of isoform C1 and 1 copy of isoform C2. hnRNP C proteins are restricted to the nucleus because they bear a nuclear retention sequence (NRS), (PMID:8830767).	10037806	Gontarek RR, Gutshall LL, Herold KM, Tsai J, Sathe GM, Mao J, Prescott C, Del Vecchio AM. (1999) hnRNP C and polypyrimidine tract-binding protein specifically interact with the pyrimidine-rich region within the 3'NTR of the HCV RNA genome. Nucleic Acids Res. 27(6):1457-1463.		HCV 3' NTR		UV cross-linking, immunoprecipitation, competition assay with HepG2 cell extract
hnRNP C	AUCGCUUCUCGGCCUUUUAAGAUUCUAGA	-5	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, C2, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 Tetramer composed of 3 copies of isoform C1 and 1 copy of isoform C2. hnRNP C proteins are restricted to the nucleus because they bear a nuclear retention sequence (NRS), (PMID:8830767).	8798770	Temsamani J, Pederson T. (1996) The C-group heterogeneous nuclear ribonucleoprotein proteins bind to the 5' stem-loop of the U2 small nuclear ribonucleoprotein particle. J Biol Chem. 271(40): 24922-24926.	hnRNP C han no affinity to poly(A), poly(C) and U1 RNA. Stem contributes to the binding.	Sequences of U2 snRNA [6066] and homopolymers		UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
hnRNP C	AUCGCUUCUCGGCCAAAAGGCUAAGAUCA	-2	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, C2, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 Tetramer composed of 3 copies of isoform C1 and 1 copy of isoform C2. hnRNP C proteins are restricted to the nucleus because they bear a nuclear retention sequence (NRS), (PMID:8830767).	8798770	Temsamani J, Pederson T. (1996) The C-group heterogeneous nuclear ribonucleoprotein proteins bind to the 5' stem-loop of the U2 small nuclear ribonucleoprotein particle. J Biol Chem. 271(40): 24922-24926.	hnRNP C han no affinity to poly(A), poly(C) and U1 RNA. Stem contributes to the binding.	Sequences of U2 snRNA [6066] and homopolymers		UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
hnRNP C	GGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCC	-2	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, C2, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 Tetramer composed of 3 copies of isoform C1 and 1 copy of isoform C2. hnRNP C proteins are restricted to the nucleus because they bear a nuclear retention sequence (NRS), (PMID:8830767).	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP C	AAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACC	-2	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, C2, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 Tetramer composed of 3 copies of isoform C1 and 1 copy of isoform C2. hnRNP C proteins are restricted to the nucleus because they bear a nuclear retention sequence (NRS), (PMID:8830767).	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP C	CCCUUUUUUUUCCACAG	-5	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, C2, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 Tetramer composed of 3 copies of isoform C1 and 1 copy of isoform C2. hnRNP C proteins are restricted to the nucleus because they bear a nuclear retention sequence (NRS), (PMID:8830767).	2533575	Garcia-Blanco MA, Jamison SF, Sharp PA. (1989) Identification and purification of a 62,000-dalton protein that binds specifically to the polypyrimidine tract of introns. Genes Dev. 3(12A):1874-1886.		Synthesized sequences		UV cross-linking, immunoprecipitation in HeLa
hnRNP C	CCUUCUUCUUUUUCCUACAG	-5	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, C2, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 Tetramer composed of 3 copies of isoform C1 and 1 copy of isoform C2. hnRNP C proteins are restricted to the nucleus because they bear a nuclear retention sequence (NRS), (PMID:8830767).	2533575	Garcia-Blanco MA, Jamison SF, Sharp PA. (1989) Identification and purification of a 62,000-dalton protein that binds specifically to the polypyrimidine tract of introns. Genes Dev. 3(12A):1874-1886.		Synthesized sequences		UV cross-linking, immunoprecipitation in HeLa
hnRNP C1	UUUUUU	-10	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 Isoform C1 is due to Alternative Splicing.	8083209	Gorlach M, Burd CG, Dreyfuss G. (1994) The determinants of RNA-binding specificity of the heterogeneous nuclear ribonucleoprotein C proteins. J Biol Chem. 269(37): 23074-8.	hnRNP C1 has no affinity to poly(rC).	Sequences of 20 nt random for SELEX.		SELEX of 20nt random sequences with purified protein confirmed by filter binding assay.
hnRNP C1	UUUUUA	-2	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 Isoform C1 is due to Alternative Splicing.	8083209	Gorlach M, Burd CG, Dreyfuss G. (1994) The determinants of RNA-binding specificity of the heterogeneous nuclear ribonucleoprotein C proteins. J Biol Chem. 269(37): 23074-8.	hnRNP C1 has no affinity to poly(rC).	Sequences of 20 nt random for SELEX.		SELEX of 20nt random sequences with purified protein confirmed by filter binding assay.
hnRNP C1	UUUUUC	-2	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 Isoform C1 is due to Alternative Splicing.	8083209	Gorlach M, Burd CG, Dreyfuss G. (1994) The determinants of RNA-binding specificity of the heterogeneous nuclear ribonucleoprotein C proteins. J Biol Chem. 269(37): 23074-8.	hnRNP C1 has no affinity to poly(rC).	Sequences of 20 nt random for SELEX.		SELEX of 20nt random sequences with purified protein confirmed by filter binding assay.
hnRNP C1	UUUUUG	-2	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 Isoform C1 is due to Alternative Splicing.	8083209	Gorlach M, Burd CG, Dreyfuss G. (1994) The determinants of RNA-binding specificity of the heterogeneous nuclear ribonucleoprotein C proteins. J Biol Chem. 269(37): 23074-8.	hnRNP C1 has no affinity to poly(rC).	Sequences of 20 nt random for SELEX.		SELEX of 20nt random sequences with purified protein confirmed by filter binding assay.
hnRNP C1	UUUUUUU	-7	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 Isoform C1 is due to Alternative Splicing.	3386636	Swanson MS, Dreyfuss G. (1988) Classification and purification of proteins of heterogeneous nuclear ribonucleoprotein particles by RNA-binding specificities. Mol Cell Biol. 8(5):2237-2241.		homopolymers		Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract.
hnRNP C1	UUUUU	-5	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 Isoform C1 is due to Alternative Splicing.	11172920	Sokolowski M, Schwartz S. (2001) Heterogeneous nuclear ribonucleoprotein C binds exclusively to the functionally important UUUUU-motifs in the human papillomavirus type-1 AU-rich inhibitory element. Virus Res. 73(2):163-175		Sequence of Papillomavirus HPV-1 AU-rich element (h1ARE).		UV crosslink and SDS-PAGE with recombinant protein, competition assay.
hnRNP C1	GGGGGGG	-4	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 Isoform C1 is due to Alternative Splicing.	7688265	Siomi H, Siomi MC, Nussbaum RL, Dreyfuss G. (1993) The protein product of the fragile X gene, FMR1, has characteristics of an RNA-binding protein. Cell. 74(2):291-298.		Homopolymers		Homopolymer binding assay with recombinant protein
hnRNP C1	UGAACUUUAAAGUUAUAGUUGUUUUAUAUGUU	-5	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 Isoform C1 is due to Alternative Splicing.	16787927	Pullmann R Jr, Abdelmohsen K, Lal A, Martindale JL, Ladner RD, Gorospe M. (2006) Differential stability of thymidylate synthase 3'-untranslated region polymorphic variants regulated by AUF1. J Biol Chem. 281(33):23456-23463.		Sequences deriving from wt and mutated TYMS [7298]		Pulldown assay and Western blotting in RKO whole-cell extract.
hnRNP C1	UGAACUUUAUAGUUGUUUUAUAUGUU	-5	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 Isoform C1 is due to Alternative Splicing.	16787927	Pullmann R Jr, Abdelmohsen K, Lal A, Martindale JL, Ladner RD, Gorospe M. (2006) Differential stability of thymidylate synthase 3'-untranslated region polymorphic variants regulated by AUF1. J Biol Chem. 281(33):23456-23463.		Sequences deriving from wt and mutated TYMS [7298]		Pulldown assay and Western blotting in RKO whole-cell extract.
hnRNP C1	GGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCC	-2	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 Isoform C1 is due to Alternative Splicing.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP C1	AAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACC	-2	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 Isoform C1 is due to Alternative Splicing.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP C2	UUUUUUU	-7	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, C2, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 isoform C2 is due to Alternative Splicing.	3386636	Swanson MS, Dreyfuss G. (1988) Classification and purification of proteins of heterogeneous nuclear ribonucleoprotein particles by RNA-binding specificities. Mol Cell Biol. 8(5):2237-2241.		homopolymers		Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract.
hnRNP C2	UUUUU	-5	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, C2, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 isoform C2 is due to Alternative Splicing.	9393875	Sokolowski M, Zhao C, Tan W, Schwartz S. (1997) AU-rich mRNA instability elements on human papillomavirus type 1 late mRNAs and c-fos mRNAs interact with the same cellular factors. Oncogene. 15(19):2303-2319.	hnRNP C1 and C2 do not bind AUUUA motifs.	Sequences and mutants of 3' UTR HPV-1 late mRNA.		EMSA, UV crosslink, Western blot and immunoprecipitation with HeLa nuclear extracts.
hnRNP C2	GGAUAC	-5	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, C2, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 isoform C2 is due to Alternative Splicing.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
hnRNP C2	GCAUAC	-5	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, C2, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 isoform C2 is due to Alternative Splicing.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
hnRNP C2	GGAUUC	-4	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, C2, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 isoform C2 is due to Alternative Splicing.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
hnRNP C2	GGGUAC	-7	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, C2, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 isoform C2 is due to Alternative Splicing.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
hnRNP C2	GGAUAU	-5	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, C2, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 isoform C2 is due to Alternative Splicing.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
hnRNP C2	UUUUUUUUUUUUUUUUUUUUU	-5	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, C2, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 isoform C2 is due to Alternative Splicing.	16157593	Buratti E, Brindisi A, Giombi M, Tisminetzky S, Ayala YM, Baralle FE. (2005) TDP-43 binds heterogeneous nuclear ribonucleoprotein A/B through its C-terminal tail: an important region for the inhibition of cystic fibrosis transmembrane conductance regulator exon 9 splicing. J Biol Chem. 280(45):37572-37584.		Synthesized sequences		EMSA with recombinant protein
hnRNP C2	UGAACUUUAAAGUUAUAGUUGUUUUAUAUGUU	-5	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, C2, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 isoform C2 is due to Alternative Splicing.	16787927	Pullmann R Jr, Abdelmohsen K, Lal A, Martindale JL, Ladner RD, Gorospe M. (2006) Differential stability of thymidylate synthase 3'-untranslated region polymorphic variants regulated by AUF1. J Biol Chem. 281(33):23456-23463.		Sequences deriving from wt and mutated TYMS [7298]		Pulldown assay and Western blotting in RKO whole-cell extract.
hnRNP C2	UGAACUUUAUAGUUGUUUUAUAUGUU	-5	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, C2, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 isoform C2 is due to Alternative Splicing.	16787927	Pullmann R Jr, Abdelmohsen K, Lal A, Martindale JL, Ladner RD, Gorospe M. (2006) Differential stability of thymidylate synthase 3'-untranslated region polymorphic variants regulated by AUF1. J Biol Chem. 281(33):23456-23463.		Sequences deriving from wt and mutated TYMS [7298]		Pulldown assay and Western blotting in RKO whole-cell extract.
hnRNP C2	GGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCC	-2	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, C2, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 isoform C2 is due to Alternative Splicing.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP C2	AAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACC	-2	Gene Name and Synonymous: HNRNPC, heterogeneous nuclear ribonucleoprotein C (C1/C2), C1, C2, HNRPC, SNRPC, MGC104306, MGC105117, MGC117353, MGC131677 isoform C2 is due to Alternative Splicing.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP D	AUUUA	-1	Gene Name and Synonymous: HNRNPD, heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa), P37, AUF1, AUF1A, HNRPD.	8647811	DeMaria CT, Brewer G. (1996) AUF1 binding affinity to A+U-rich elements correlates with rapid mRNA degradation. J Biol Chem. 271(21): 12179-84.	hnRNP D has no affinity to poly(rU).	WT and mutants rabbit beta-globin [100009084] 3'UTR, c-fos [2353] and c-myc [4609]		UV crosslink and SDS-PAGE with recombinant protein. EMSA with recombinant protein.
hnRNP D	UUAGGG	-8	Gene Name and Synonymous: HNRNPD, heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa), P37, AUF1, AUF1A, HNRPD.	8321232	Ishikawa F, Matunis MJ, Dreyfuss G, Cech TR. (1993) Nuclear proteins that bind the pre-mRNA 3' splice site sequence r(UUAG/G) and the human telomeric DNA sequence d(TTAGGG)n. Mol Cell Biol. 13(7): 4301-4310.		synthesized oligos		EMSA with Hela nuclear extract and synthesized oligos. EMSA with purified proteins and synthesized oligos.
hnRNP D	UUAGGA	-6	Gene Name and Synonymous: HNRNPD, heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa), P37, AUF1, AUF1A, HNRPD.	8321232	Ishikawa F, Matunis MJ, Dreyfuss G, Cech TR. (1993) Nuclear proteins that bind the pre-mRNA 3' splice site sequence r(UUAG/G) and the human telomeric DNA sequence d(TTAGGG)n. Mol Cell Biol. 13(7): 4301-4310.		synthesized oligos		EMSA with Hela nuclear extract and synthesized oligos. EMSA with purified proteins and synthesized oligos.
hnRNP D	UUAGAG	-4	Gene Name and Synonymous: HNRNPD, heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa), P37, AUF1, AUF1A, HNRPD.	8321232	Ishikawa F, Matunis MJ, Dreyfuss G, Cech TR. (1993) Nuclear proteins that bind the pre-mRNA 3' splice site sequence r(UUAG/G) and the human telomeric DNA sequence d(TTAGGG)n. Mol Cell Biol. 13(7): 4301-4310.		synthesized oligos		EMSA with Hela nuclear extract and synthesized oligos. EMSA with purified proteins and synthesized oligos.
hnRNP D	CACUGCAUUCUCACCCGCAAGCA	-5	Gene Name and Synonymous: HNRNPD, heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa), P37, AUF1, AUF1A, HNRPD.	17664280	Melton AA, Jackson J, Wang J, Lynch KW. (2007) Combinatorial control of signal-induced exon repression by hnRNP L and PSF. Mol Cell Biol. 27(19): 6972-6984.	In this context, hnRNP K, hnRNP D, hnRNP A1, hnRNP A2/B1 do no bind CACUGGAUUCUCACCGGAAGUA and hnRNP A1, hnRNP A2/B1 do no bind CACUGCAUUCUCACCGCAAGCA.	Synthesized sequences. Construct CD45 [PTPRC, 5788] EX3 - INT - EX4 - INT - EX7.	In vitro splicing in JSL1 nuclear extract.	Western blotting analysis of direct RNA affinity purifications of JSL1 nuclear extract.
hnRNP D	AUAAAAGAACUUUUUUAUGCUUACCAUCUUUUUUUUUUCUUUAACAGAUUUGUAUUUAAGAAUUGUUUUUAAAAAAUUUUAAGAUUUACACAAUGUUUCUCUGUAAAUA	-9	Gene Name and Synonymous: HNRNPD, heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa), P37, AUF1, AUF1A, HNRPD.	8647811	DeMaria CT, Brewer G. (1996) AUF1 binding affinity to A+U-rich elements correlates with rapid mRNA degradation. J Biol Chem. 271(21): 12179-84.	hnRNP D has no affinity to poly(rU).	WT and mutants rabbit beta-globin [100009084] 3'UTR, c-fos [2353] and c-myc [4609]		UV crosslink and SDS-PAGE with recombinant protein. EMSA with recombinant protein.
hnRNP D	UUUAUUGUGUUUUUAAUUUAUUUAUUAAGAUGGAUUCUCAGAUAUUUAUAUUUUUAUUUUAUUUUUUU	-10	Gene Name and Synonymous: HNRNPD, heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa), P37, AUF1, AUF1A, HNRPD.	8647811	DeMaria CT, Brewer G. (1996) AUF1 binding affinity to A+U-rich elements correlates with rapid mRNA degradation. J Biol Chem. 271(21): 12179-84.	hnRNP D has no affinity to poly(rU).	WT and mutants rabbit beta-globin [100009084] 3'UTR, c-fos [2353] and c-myc [4609]		UV crosslink and SDS-PAGE with recombinant protein. EMSA with recombinant protein.
hnRNP D	AUUUAUUUAUUUAUUUAUUUA	-8	Gene Name and Synonymous: HNRNPD, heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa), P37, AUF1, AUF1A, HNRPD.	8647811	DeMaria CT, Brewer G. (1996) AUF1 binding affinity to A+U-rich elements correlates with rapid mRNA degradation. J Biol Chem. 271(21): 12179-84.	hnRNP D has no affinity to poly(rU).	WT and mutants rabbit beta-globin [100009084] 3'UTR, c-fos [2353] and c-myc [4609]		UV crosslink and SDS-PAGE with recombinant protein. EMSA with recombinant protein.
hnRNP D	AUUUAUUUAUUUAUUUA	-6	Gene Name and Synonymous: HNRNPD, heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa), P37, AUF1, AUF1A, HNRPD.	8647811	DeMaria CT, Brewer G. (1996) AUF1 binding affinity to A+U-rich elements correlates with rapid mRNA degradation. J Biol Chem. 271(21): 12179-84.	hnRNP D has no affinity to poly(rU).	WT and mutants rabbit beta-globin [100009084] 3'UTR, c-fos [2353] and c-myc [4609]		UV crosslink and SDS-PAGE with recombinant protein. EMSA with recombinant protein.
hnRNP D	AUUUAUUUAUUUA	-3	Gene Name and Synonymous: HNRNPD, heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa), P37, AUF1, AUF1A, HNRPD.	8647811	DeMaria CT, Brewer G. (1996) AUF1 binding affinity to A+U-rich elements correlates with rapid mRNA degradation. J Biol Chem. 271(21): 12179-84.	hnRNP D has no affinity to poly(rU).	WT and mutants rabbit beta-globin [100009084] 3'UTR, c-fos [2353] and c-myc [4609]		UV crosslink and SDS-PAGE with recombinant protein. EMSA with recombinant protein.
hnRNP D	AUUUAUUUA	-2	Gene Name and Synonymous: HNRNPD, heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa), P37, AUF1, AUF1A, HNRPD.	8647811	DeMaria CT, Brewer G. (1996) AUF1 binding affinity to A+U-rich elements correlates with rapid mRNA degradation. J Biol Chem. 271(21): 12179-84.	hnRNP D has no affinity to poly(rU).	WT and mutants rabbit beta-globin [100009084] 3'UTR, c-fos [2353] and c-myc [4609]		UV crosslink and SDS-PAGE with recombinant protein. EMSA with recombinant protein.
hnRNP D	GUGAUUAUUUAUUAUUUAUUUAUUAUUUAUUUAUUUAG	-5	Gene Name and Synonymous: HNRNPD, heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa), P37, AUF1, AUF1A, HNRPD.	11514570	Wilson GM, Sutphen K, Moutafis M, Sinha S, Brewer G. (2001) Structural remodeling of an A + U-rich RNA element by cation or AUF1 binding. J Biol Chem. 276(42):38400-38409.		Synthesized sequences		Resonance energy transfer (RET)
hnRNP D	GAUCUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUA	-5	Gene Name and Synonymous: HNRNPD, heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa), P37, AUF1, AUF1A, HNRPD.	11514570	Wilson GM, Sutphen K, Moutafis M, Sinha S, Brewer G. (2001) Structural remodeling of an A + U-rich RNA element by cation or AUF1 binding. J Biol Chem. 276(42):38400-38409.		Synthesized sequences		Resonance energy transfer (RET)
hnRNP D	UUUUAUUGUGUUUUUAAUUUAUUUAUUAAGAUGGAUUCUCAGAUAUUUAUAUUUUUAUUUUAUUUUUUU	-5	Gene Name and Synonymous: HNRNPD, heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa), P37, AUF1, AUF1A, HNRPD.	11719186	Chen CY, Gherzi R, Ong SE, Chan EL, Raijmakers R, Pruijn GJ, Stoecklin G, Moroni C, Mann M, Karin M. (2001) AU binding proteins recruit the exosome to degrade ARE-containing mRNAs. Cell. 107(4):451-464.		Sequences deriving from FOS [2353]		UV crosslinking, imunoprecipitation with Jurkat extracts
hnRNP D	UCAGCUAUUUACUGCCAAAGGGAAAUAUCAUUUAUUUUUUACAUUAUUAAGAAAAAAAGAUUUAUUUAUUUAAGACAGUCCCAUCAAAACUCCUGUCUUUGGAAAUC	-5	Gene Name and Synonymous: HNRNPD, heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa), P37, AUF1, AUF1A, HNRPD.	11856759	Lapucci A, Donnini M, Papucci L, Witort E, Tempestini A, Bevilacqua A, Nicolin A, Brewer G, Schiavone N, Capaccioli S. (2002) AUF1 Is a bcl-2 A+U-rich element-binding protein involved in bcl-2 mRNA destabilization during apoptosis. J Biol Chem. 277(18):16139-16146.		Sequences deriving from BCL2 [596]		EMSA supershift in Jurkat cytoplasmic extracts
hnRNP D	GUGAUUAUUUAUUAUUUAUUUAUUAUUUAUUUAUUUAC	-5	Gene Name and Synonymous: HNRNPD, heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa), P37, AUF1, AUF1A, HNRPD.	12819194	Wilson GM, Lu J, Sutphen K, Suarez Y, Sinha S, Brewer B, Villanueva-Feliciano EC, Ysla RM, Charles S, Brewer G. (2003) Phosphorylation of p40AUF1 regulates binding to A+U-rich mRNA-destabilizing elements and protein-induced changes in ribonucleoprotein structure. J Biol Chem. 278(35):33039-33048.		Sequences deriving from TNF [7124]		EMSA with recombinant protein
hnRNP D	UUUUUUAAAGUUUCUUGCAUUUAUUAUUCUCAAAAGUUUUUUCUAAGUUAAACAGUCAGUAUGCAAUCUUAAUAUAUGCUUUCUUUU	-5	Gene Name and Synonymous: HNRNPD, heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa), P37, AUF1, AUF1A, HNRPD.	16289864	Sommer S, Cui Y, Brewer G, Fuqua SA. (2005) The c-Yes 3'-UTR contains adenine/uridine-rich elements that bind AUF1 and HuR involved in mRNA decay in breast cancer cells. J Steroid Biochem Mol Biol. 97(3):219-229.		Sequences deriving from YES1 [7525]		EMSA supershift with MDA-MB-231 protein extract and recombinant protein. UV-cross link, immunoprecipitation with MDA-MB-231 protein extracts.
hnRNP D	UUUUUAUGUAAAACAUUUUUAGAACUCCAGUUUUCAAAUCAUGUUUGAAUCUACAUUCACUUUUUUUUGUUUUCUUUUUU	-5	Gene Name and Synonymous: HNRNPD, heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa), P37, AUF1, AUF1A, HNRPD.	16289864	Sommer S, Cui Y, Brewer G, Fuqua SA. (2005) The c-Yes 3'-UTR contains adenine/uridine-rich elements that bind AUF1 and HuR involved in mRNA decay in breast cancer cells. J Steroid Biochem Mol Biol. 97(3):219-229.		Sequences deriving from YES1 [7525]		EMSA supershift with MDA-MB-231 protein extract and recombinant protein. UV-cross link, immunoprecipitation with MDA-MB-231 protein extracts.
hnRNP D	UGAACUUUAAAGUUAUAGUUGUUUUAUAUGUU	-5	Gene Name and Synonymous: HNRNPD, heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa), P37, AUF1, AUF1A, HNRPD.	16787927	Pullmann R Jr, Abdelmohsen K, Lal A, Martindale JL, Ladner RD, Gorospe M. (2006) Differential stability of thymidylate synthase 3'-untranslated region polymorphic variants regulated by AUF1. J Biol Chem. 281(33):23456-23463.		Sequences deriving from wt and mutated TYMS [7298]		Pulldown assay and Western blotting in RKO whole-cell extract.
hnRNP D	UGAACUUUAUAGUUGUUUUAUAUGUU	-10	Gene Name and Synonymous: HNRNPD, heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa), P37, AUF1, AUF1A, HNRPD.	16787927	Pullmann R Jr, Abdelmohsen K, Lal A, Martindale JL, Ladner RD, Gorospe M. (2006) Differential stability of thymidylate synthase 3'-untranslated region polymorphic variants regulated by AUF1. J Biol Chem. 281(33):23456-23463.		Sequences deriving from wt and mutated TYMS [7298]		Pulldown assay and Western blotting in RKO whole-cell extract.
hnRNP D	AAAAAAA	-5	Gene Name and Synonymous: HNRNPD, heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa), P37, AUF1, AUF1A, HNRPD.	16834569	Sagliocco F, Laloo B, Cosson B, Laborde L, Castroviejo M, Rosenbaum J, Ripoche J, Grosset C. (2006) The ARE-associated factor AUF1 binds poly(A) in vitro in competition with PABP. Biochem J. 400(2):337-347.		Synthesized oligos		Homopolymer binding assay and Western blot with HeLa extracts or recombinant protein.
hnRNP D	AGACUUUAUGUAGUUUUUAUAUGUUGUAAUAUUUCUUCAAAUAAAUCUCUCCUAUAA	-5	Gene Name and Synonymous: HNRNPD, heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa), P37, AUF1, AUF1A, HNRPD.	17030625	Torrisani J, Unterberger A, Tendulkar SR, Shikimi K, Szyf M. (2007) AUF1 cell cycle variations define genomic DNA methylation by regulation of DNMT1 mRNA stability. Mol Cell Biol. 27(1):395-410.		Sequences deriving from DNMT1 [1786]. Synthesized sequences.		UV cross-linking in HeLa cytoplasmic extracts, MALDI-TOF, Western blot
hnRNP D	CAUAAAUUAUUUUCAAGUGUAACUUAUUAACCUAUUUAUUAUUUAUGUAUUUAUUUAAGC	-5	Gene Name and Synonymous: HNRNPD, heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa), P37, AUF1, AUF1A, HNRPD.	18650551	Palanisamy V, Park NJ, Wang J, Wong DT. (2008) AUF1 and HuR proteins stabilize interleukin-8 mRNA in human saliva. J Dent Res. 87(8):772-776.		Sequences deriving from IL8 [3576]		UV cross-linking, immunoprecipitation with salivary protein extracts.
hnRNP D	CCAUUUAUAUCAUUUUUUAUAUAUU	-5	Gene Name and Synonymous: HNRNPD, heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa), P37, AUF1, AUF1A, HNRPD.	20498276	Chang N, Yi J, Guo G, Liu X, Shang Y, Tong T, Cui Q, Zhan M, Gorospe M, Wang W. (2010) HuR uses AUF1 as a cofactor to promote p16INK4 mRNA decay. Mol Cell Biol. 30(15):3875-3886.		Sequences deriving from CDKN2A [1029]		Protein affinity purification, western blotting with HeLa cytoplasmic extracts
hnRNP D	CCAUUUAUAUCAUAAAAUAUAUAUU	-5	Gene Name and Synonymous: HNRNPD, heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa), P37, AUF1, AUF1A, HNRPD.	20498276	Chang N, Yi J, Guo G, Liu X, Shang Y, Tong T, Cui Q, Zhan M, Gorospe M, Wang W. (2010) HuR uses AUF1 as a cofactor to promote p16INK4 mRNA decay. Mol Cell Biol. 30(15):3875-3886.		Sequences deriving from CDKN2A [1029]		Protein affinity purification, western blotting with HeLa cytoplasmic extracts
hnRNP D	CCAUUUAUAUCAUUUUUAAAAAAUU	-5	Gene Name and Synonymous: HNRNPD, heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa), P37, AUF1, AUF1A, HNRPD.	20498276	Chang N, Yi J, Guo G, Liu X, Shang Y, Tong T, Cui Q, Zhan M, Gorospe M, Wang W. (2010) HuR uses AUF1 as a cofactor to promote p16INK4 mRNA decay. Mol Cell Biol. 30(15):3875-3886.		Sequences deriving from CDKN2A [1029]		Protein affinity purification, western blotting with HeLa cytoplasmic extracts
hnRNP D	CCAUUUAUAUCAUAAAAAUAUUAUU	-5	Gene Name and Synonymous: HNRNPD, heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa), P37, AUF1, AUF1A, HNRPD.	20498276	Chang N, Yi J, Guo G, Liu X, Shang Y, Tong T, Cui Q, Zhan M, Gorospe M, Wang W. (2010) HuR uses AUF1 as a cofactor to promote p16INK4 mRNA decay. Mol Cell Biol. 30(15):3875-3886.		Sequences deriving from CDKN2A [1029]		Protein affinity purification, western blotting with HeLa cytoplasmic extracts
hnRNP D	AGAUAU	-9	Gene Name and Synonymous: HNRNPD, heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa), P37, AUF1, AUF1A, HNRPD.	24452013	Choudhury R, Roy SG, Tsai YS, Tripathy A, Graves LM, Wang Z. (2014) The splicing activator DAZAP1 integrates splicing control into MEK/Erk-regulated cell proliferation and migration. Nat Commun. 5:3078.		Synthetic sequences. Construct of Chinese hamster Dhfr [100689028] GFP - INT1 - EX2 - INT2 - GFP where INT2 contains a MS2 hairpin.	In vivo splicing in HEK-293T using MS2-DAZAP1 fusion proteins.	RNA affinity chromatography and SPR analysis with recombinant protein.
hnRNP D	AAUUUA	-9	Gene Name and Synonymous: HNRNPD, heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa), P37, AUF1, AUF1A, HNRPD.	24452013	Choudhury R, Roy SG, Tsai YS, Tripathy A, Graves LM, Wang Z. (2014) The splicing activator DAZAP1 integrates splicing control into MEK/Erk-regulated cell proliferation and migration. Nat Commun. 5:3078.		Synthetic sequences. Construct of Chinese hamster Dhfr [100689028] GFP - INT1 - EX2 - INT2 - GFP where INT2 contains a MS2 hairpin.	In vivo splicing in HEK-293T using MS2-DAZAP1 fusion proteins.	RNA affinity chromatography and SPR analysis with recombinant protein.
hnRNP D	AGUAGG	-9	Gene Name and Synonymous: HNRNPD, heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa), P37, AUF1, AUF1A, HNRPD.	24452013	Choudhury R, Roy SG, Tsai YS, Tripathy A, Graves LM, Wang Z. (2014) The splicing activator DAZAP1 integrates splicing control into MEK/Erk-regulated cell proliferation and migration. Nat Commun. 5:3078.		Synthetic sequences. Construct of Chinese hamster Dhfr [100689028] GFP - INT1 - EX2 - INT2 - GFP where INT2 contains a MS2 hairpin.	In vivo splicing in HEK-293T using MS2-DAZAP1 fusion proteins.	RNA affinity chromatography and SPR analysis with recombinant protein.
hnRNP D0	UUAGGG	-6	Gene Name and Synonymous: HNRNPD, heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa), P37, AUF1, AUF1A, HNRPD Isoform:Isoform D0 is due to Alternative Splicing.	7673195	Kajita Y, Nakayama J, Aizawa M, Ishikawa F. (1995) The UUAG-specific RNA binding protein, heterogeneous nuclear ribonucleoprotein D0. Common modular structure and binding properties of the 2xRBD-Gly family. J Biol Chem. 270(38): 22167-22175.		Synthesized sequences		Filter Binding Assay of recombinant protein and synthesized oligos.
hnRNP D0	GGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCC	-2	Gene Name and Synonymous: HNRNPD, heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa), P37, AUF1, AUF1A, HNRPD Isoform:Isoform D0 is due to Alternative Splicing.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP D0	AAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACC	-2	Gene Name and Synonymous: HNRNPD, heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa), P37, AUF1, AUF1A, HNRPD Isoform:Isoform D0 is due to Alternative Splicing.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP DL	AACCUUGCC	-2	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	12406575	Kamei D, Yamada M. (2003) Interactions of heterogeneous nuclear ribonucleoprotein D-like protein JKTBP and its domains with high-affinity binding sites. Gene 298(1):49-57.		Sequences of 20 nt random for SELEX.		SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells.
hnRNP DL	AAUACCA	-2	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	12406575	Kamei D, Yamada M. (2003) Interactions of heterogeneous nuclear ribonucleoprotein D-like protein JKTBP and its domains with high-affinity binding sites. Gene 298(1):49-57.		Sequences of 20 nt random for SELEX.		SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells.
hnRNP DL	ACACCAGAC	-2	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	12406575	Kamei D, Yamada M. (2003) Interactions of heterogeneous nuclear ribonucleoprotein D-like protein JKTBP and its domains with high-affinity binding sites. Gene 298(1):49-57.		Sequences of 20 nt random for SELEX.		SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells.
hnRNP DL	ACAUUAGCC	-2	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	12406575	Kamei D, Yamada M. (2003) Interactions of heterogeneous nuclear ribonucleoprotein D-like protein JKTBP and its domains with high-affinity binding sites. Gene 298(1):49-57.		Sequences of 20 nt random for SELEX.		SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells.
hnRNP DL	ACCACGCA	-2	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	12406575	Kamei D, Yamada M. (2003) Interactions of heterogeneous nuclear ribonucleoprotein D-like protein JKTBP and its domains with high-affinity binding sites. Gene 298(1):49-57.		Sequences of 20 nt random for SELEX.		SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells.
hnRNP DL	ACUACAGCA	-2	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	12406575	Kamei D, Yamada M. (2003) Interactions of heterogeneous nuclear ribonucleoprotein D-like protein JKTBP and its domains with high-affinity binding sites. Gene 298(1):49-57.		Sequences of 20 nt random for SELEX.		SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells.
hnRNP DL	ACUAACU	-2	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	12406575	Kamei D, Yamada M. (2003) Interactions of heterogeneous nuclear ribonucleoprotein D-like protein JKTBP and its domains with high-affinity binding sites. Gene 298(1):49-57.		Sequences of 20 nt random for SELEX.		SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells.
hnRNP DL	ACUAAGUA	-2	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	12406575	Kamei D, Yamada M. (2003) Interactions of heterogeneous nuclear ribonucleoprotein D-like protein JKTBP and its domains with high-affinity binding sites. Gene 298(1):49-57.		Sequences of 20 nt random for SELEX.		SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells.
hnRNP DL	ACUAGAG	-2	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	12406575	Kamei D, Yamada M. (2003) Interactions of heterogeneous nuclear ribonucleoprotein D-like protein JKTBP and its domains with high-affinity binding sites. Gene 298(1):49-57.		Sequences of 20 nt random for SELEX.		SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells.
hnRNP DL	ACUAGCC	-10	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	12406575	Kamei D, Yamada M. (2003) Interactions of heterogeneous nuclear ribonucleoprotein D-like protein JKTBP and its domains with high-affinity binding sites. Gene 298(1):49-57.		Sequences of 20 nt random for SELEX.		SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells.
hnRNP DL	ACUAGCG	-2	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	12406575	Kamei D, Yamada M. (2003) Interactions of heterogeneous nuclear ribonucleoprotein D-like protein JKTBP and its domains with high-affinity binding sites. Gene 298(1):49-57.		Sequences of 20 nt random for SELEX.		SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells.
hnRNP DL	ACUAGCU	-2	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	12406575	Kamei D, Yamada M. (2003) Interactions of heterogeneous nuclear ribonucleoprotein D-like protein JKTBP and its domains with high-affinity binding sites. Gene 298(1):49-57.		Sequences of 20 nt random for SELEX.		SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells.
hnRNP DL	ACUAGGA	-2	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	12406575	Kamei D, Yamada M. (2003) Interactions of heterogeneous nuclear ribonucleoprotein D-like protein JKTBP and its domains with high-affinity binding sites. Gene 298(1):49-57.		Sequences of 20 nt random for SELEX.		SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells.
hnRNP DL	ACUGCA	-2	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	12406575	Kamei D, Yamada M. (2003) Interactions of heterogeneous nuclear ribonucleoprotein D-like protein JKTBP and its domains with high-affinity binding sites. Gene 298(1):49-57.		Sequences of 20 nt random for SELEX.		SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells.
hnRNP DL	ACUUUAA	-2	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	12406575	Kamei D, Yamada M. (2003) Interactions of heterogeneous nuclear ribonucleoprotein D-like protein JKTBP and its domains with high-affinity binding sites. Gene 298(1):49-57.		Sequences of 20 nt random for SELEX.		SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells.
hnRNP DL	AGUAGCC	-2	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	12406575	Kamei D, Yamada M. (2003) Interactions of heterogeneous nuclear ribonucleoprotein D-like protein JKTBP and its domains with high-affinity binding sites. Gene 298(1):49-57.		Sequences of 20 nt random for SELEX.		SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells.
hnRNP DL	AUCUGAC	-2	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	12406575	Kamei D, Yamada M. (2003) Interactions of heterogeneous nuclear ribonucleoprotein D-like protein JKTBP and its domains with high-affinity binding sites. Gene 298(1):49-57.		Sequences of 20 nt random for SELEX.		SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells.
hnRNP DL	AUGCGCA	-2	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	12406575	Kamei D, Yamada M. (2003) Interactions of heterogeneous nuclear ribonucleoprotein D-like protein JKTBP and its domains with high-affinity binding sites. Gene 298(1):49-57.		Sequences of 20 nt random for SELEX.		SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells.
hnRNP DL	AUUAGGCA	-2	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	12406575	Kamei D, Yamada M. (2003) Interactions of heterogeneous nuclear ribonucleoprotein D-like protein JKTBP and its domains with high-affinity binding sites. Gene 298(1):49-57.		Sequences of 20 nt random for SELEX.		SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells.
hnRNP DL	CCUUUAGGC	-2	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	12406575	Kamei D, Yamada M. (2003) Interactions of heterogeneous nuclear ribonucleoprotein D-like protein JKTBP and its domains with high-affinity binding sites. Gene 298(1):49-57.		Sequences of 20 nt random for SELEX.		SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells.
hnRNP DL	GAACUAAGC	-2	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	12406575	Kamei D, Yamada M. (2003) Interactions of heterogeneous nuclear ribonucleoprotein D-like protein JKTBP and its domains with high-affinity binding sites. Gene 298(1):49-57.		Sequences of 20 nt random for SELEX.		SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells.
hnRNP DL	GACUAGCA	-5	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	12406575	Kamei D, Yamada M. (2003) Interactions of heterogeneous nuclear ribonucleoprotein D-like protein JKTBP and its domains with high-affinity binding sites. Gene 298(1):49-57.		Sequences of 20 nt random for SELEX.		SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells.
hnRNP DL	GACUAGCG	-2	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	12406575	Kamei D, Yamada M. (2003) Interactions of heterogeneous nuclear ribonucleoprotein D-like protein JKTBP and its domains with high-affinity binding sites. Gene 298(1):49-57.		Sequences of 20 nt random for SELEX.		SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells.
hnRNP DL	GCACUAGAU	-2	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	12406575	Kamei D, Yamada M. (2003) Interactions of heterogeneous nuclear ribonucleoprotein D-like protein JKTBP and its domains with high-affinity binding sites. Gene 298(1):49-57.		Sequences of 20 nt random for SELEX.		SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells.
hnRNP DL	GCACUAGGC	-2	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	12406575	Kamei D, Yamada M. (2003) Interactions of heterogeneous nuclear ribonucleoprotein D-like protein JKTBP and its domains with high-affinity binding sites. Gene 298(1):49-57.		Sequences of 20 nt random for SELEX.		SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells.
hnRNP DL	GCGAGCA	-2	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	12406575	Kamei D, Yamada M. (2003) Interactions of heterogeneous nuclear ribonucleoprotein D-like protein JKTBP and its domains with high-affinity binding sites. Gene 298(1):49-57.		Sequences of 20 nt random for SELEX.		SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells.
hnRNP DL	GCUAGUA	-2	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	12406575	Kamei D, Yamada M. (2003) Interactions of heterogeneous nuclear ribonucleoprotein D-like protein JKTBP and its domains with high-affinity binding sites. Gene 298(1):49-57.		Sequences of 20 nt random for SELEX.		SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells.
hnRNP DL	GGACUAGCC	-5	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	12406575	Kamei D, Yamada M. (2003) Interactions of heterogeneous nuclear ribonucleoprotein D-like protein JKTBP and its domains with high-affinity binding sites. Gene 298(1):49-57.		Sequences of 20 nt random for SELEX.		SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells.
hnRNP DL	GGACUAGCU	-3	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	12406575	Kamei D, Yamada M. (2003) Interactions of heterogeneous nuclear ribonucleoprotein D-like protein JKTBP and its domains with high-affinity binding sites. Gene 298(1):49-57.		Sequences of 20 nt random for SELEX.		SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells.
hnRNP DL	GGAGUAGCC	-2	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	12406575	Kamei D, Yamada M. (2003) Interactions of heterogeneous nuclear ribonucleoprotein D-like protein JKTBP and its domains with high-affinity binding sites. Gene 298(1):49-57.		Sequences of 20 nt random for SELEX.		SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells.
hnRNP DL	GGAGUAGCU	-2	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	12406575	Kamei D, Yamada M. (2003) Interactions of heterogeneous nuclear ribonucleoprotein D-like protein JKTBP and its domains with high-affinity binding sites. Gene 298(1):49-57.		Sequences of 20 nt random for SELEX.		SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells.
hnRNP DL	GGAUUAGCC	-7	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	12406575	Kamei D, Yamada M. (2003) Interactions of heterogeneous nuclear ribonucleoprotein D-like protein JKTBP and its domains with high-affinity binding sites. Gene 298(1):49-57.		Sequences of 20 nt random for SELEX.		SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells.
hnRNP DL	UGUCGC	-2	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	12406575	Kamei D, Yamada M. (2003) Interactions of heterogeneous nuclear ribonucleoprotein D-like protein JKTBP and its domains with high-affinity binding sites. Gene 298(1):49-57.		Sequences of 20 nt random for SELEX.		SELEX of 20nt random with protein and filter binding assay. UV crosslink, immunoblot on HL-60 cells.
hnRNP DL	UUUAGUCAGCCUUAUAGCUAA	-5	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	22434879	Zubovic L, Baralle M, Baralle FE. (2012) Mutually exclusive splicing regulates the Nav 1.6 sodium channel function through a combinatorial mechanism that involves three distinct splicing regulatory elements and their ligands. Nucleic Acids Res. 40(13):6255-6269.		Sequences deriving from SCN8A [6334]. Constructs of wt or mutated SCN8A [6334] EX17 - INT17 - EX18N - INT18 - EX18A - INT18 - EX19	In vivo splicing in HeLa	Pulldown, mass spectrophotometry, western blot and siRNA knockdown with HeLa.
hnRNP DL	AGAUAU	-7	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	24452013	Choudhury R, Roy SG, Tsai YS, Tripathy A, Graves LM, Wang Z. (2014) The splicing activator DAZAP1 integrates splicing control into MEK/Erk-regulated cell proliferation and migration. Nat Commun. 5:3078.		Synthetic sequences. Construct of Chinese hamster Dhfr [100689028] GFP - INT1 - EX2 - INT2 - GFP where INT2 contains a MS2 hairpin.	In vivo splicing in HEK-293T using MS2-DAZAP1 fusion proteins.	RNA affinity chromatography and SPR analysis with recombinant protein.
hnRNP DL	AAUUUA	-9	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	24452013	Choudhury R, Roy SG, Tsai YS, Tripathy A, Graves LM, Wang Z. (2014) The splicing activator DAZAP1 integrates splicing control into MEK/Erk-regulated cell proliferation and migration. Nat Commun. 5:3078.		Synthetic sequences. Construct of Chinese hamster Dhfr [100689028] GFP - INT1 - EX2 - INT2 - GFP where INT2 contains a MS2 hairpin.	In vivo splicing in HEK-293T using MS2-DAZAP1 fusion proteins.	RNA affinity chromatography and SPR analysis with recombinant protein.
hnRNP DL	AGUAGG	-9	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	24452013	Choudhury R, Roy SG, Tsai YS, Tripathy A, Graves LM, Wang Z. (2014) The splicing activator DAZAP1 integrates splicing control into MEK/Erk-regulated cell proliferation and migration. Nat Commun. 5:3078.		Synthetic sequences. Construct of Chinese hamster Dhfr [100689028] GFP - INT1 - EX2 - INT2 - GFP where INT2 contains a MS2 hairpin.	In vivo splicing in HEK-293T using MS2-DAZAP1 fusion proteins.	RNA affinity chromatography and SPR analysis with recombinant protein.
hnRNP DL	GGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCC	-2	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP DL	AAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACC	-2	Gene Name and Synonymous: HNRPDL, heterogeneous nuclear ribonucleoprotein D-like, JKTBP, JKTBP2, laAUF1.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP E1	UUAGGG	-8	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	8321232	Ishikawa F, Matunis MJ, Dreyfuss G, Cech TR. (1993) Nuclear proteins that bind the pre-mRNA 3' splice site sequence r(UUAG/G) and the human telomeric DNA sequence d(TTAGGG)n. Mol Cell Biol. 13(7): 4301-4310.		synthesized oligos		EMSA with Hela nuclear extract and synthesized oligos. EMSA with purified proteins and synthesized oligos.
hnRNP E1	UUAGGA	-6	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	8321232	Ishikawa F, Matunis MJ, Dreyfuss G, Cech TR. (1993) Nuclear proteins that bind the pre-mRNA 3' splice site sequence r(UUAG/G) and the human telomeric DNA sequence d(TTAGGG)n. Mol Cell Biol. 13(7): 4301-4310.		synthesized oligos		EMSA with Hela nuclear extract and synthesized oligos. EMSA with purified proteins and synthesized oligos.
hnRNP E1	UUAGAG	-4	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	8321232	Ishikawa F, Matunis MJ, Dreyfuss G, Cech TR. (1993) Nuclear proteins that bind the pre-mRNA 3' splice site sequence r(UUAG/G) and the human telomeric DNA sequence d(TTAGGG)n. Mol Cell Biol. 13(7): 4301-4310.		synthesized oligos		EMSA with Hela nuclear extract and synthesized oligos. EMSA with purified proteins and synthesized oligos.
hnRNP E1	CCCCCCC	-7	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	7607214	Leffers H, Dejgaard K, Celis JE. (1995) Characterisation of two major cellular poly(rC)-binding human proteins, each containing three K-homologous (KH) domains. Eur J Biochem. 230(2): 447-453.	hnRNP E1 has no affinity to poly(rA). hnRNP E2 and hnRNP K have no affinity to poly(rA) and poly(rU).	homopolymers		Western blot of AMA (human amnion) cell extracts and homoribopolymers. Western blot of recombinant proteins and homoribopolymers.
hnRNP E1	GGGGGGG	-5	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	3386636	Swanson MS, Dreyfuss G. (1988) Classification and purification of proteins of heterogeneous nuclear ribonucleoprotein particles by RNA-binding specificities. Mol Cell Biol. 8(5):2237-2241.		homopolymers		Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract.
hnRNP E1	UUUUUUU	-4	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	7607214	Leffers H, Dejgaard K, Celis JE. (1995) Characterisation of two major cellular poly(rC)-binding human proteins, each containing three K-homologous (KH) domains. Eur J Biochem. 230(2): 447-453.	hnRNP E1 has no affinity to poly(rA). hnRNP E2 and hnRNP K have no affinity to poly(rA) and poly(rU).	homopolymers		Western blot of AMA (human amnion) cell extracts and homoribopolymers. Western blot of recombinant proteins and homoribopolymers.
hnRNP E1	UCCACUUUCAAGUGACCCCUUACCUACUCACACCACUGCAUUCUCACCCGCAAGCACCUU	-5	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	17664280	Melton AA, Jackson J, Wang J, Lynch KW. (2007) Combinatorial control of signal-induced exon repression by hnRNP L and PSF. Mol Cell Biol. 27(19): 6972-6984.	In this context, hnRNP K, hnRNP D, hnRNP A1, hnRNP A2/B1 do no bind CACUGGAUUCUCACCGGAAGUA and hnRNP A1, hnRNP A2/B1 do no bind CACUGCAUUCUCACCGCAAGCA.	Synthesized sequences. Construct CD45 [PTPRC, 5788] EX3 - INT - EX4 - INT - EX7.	In vitro splicing in JSL1 nuclear extract.	Western blotting analysis of direct RNA affinity purifications of JSL1 nuclear extract.
hnRNP E1	UCCACUUUCAAGUGACCCCUUACCUACUCACACCACUGGAUUCUCACCCGGAAGUACCUU	-2	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	17664280	Melton AA, Jackson J, Wang J, Lynch KW. (2007) Combinatorial control of signal-induced exon repression by hnRNP L and PSF. Mol Cell Biol. 27(19): 6972-6984.	In this context, hnRNP K, hnRNP D, hnRNP A1, hnRNP A2/B1 do no bind CACUGGAUUCUCACCGGAAGUA and hnRNP A1, hnRNP A2/B1 do no bind CACUGCAUUCUCACCGCAAGCA.	Synthesized sequences. Construct CD45 [PTPRC, 5788] EX3 - INT - EX4 - INT - EX7.	In vitro splicing in JSL1 nuclear extract.	Western blotting analysis of direct RNA affinity purifications of JSL1 nuclear extract.
hnRNP E1	CCCAACGGGCCCUCCUCCCC	-5	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	9122208	Holcik M, Liebhaber SA. (1997) Four highly stable eukaryotic mRNAs assemble 3' untranslated region RNA-protein complexes sharing cis and trans components. Proc Natl Acad Sci U S A. 94(6):2410-2414.		Synthesized sequences.		RNase H mapping, EMSA, immunoblot
hnRNP E1	CCCAGCCGGCCCUCCUCCCC	-5	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	9122208	Holcik M, Liebhaber SA. (1997) Four highly stable eukaryotic mRNAs assemble 3' untranslated region RNA-protein complexes sharing cis and trans components. Proc Natl Acad Sci U S A. 94(6):2410-2414.		Synthesized sequences.		RNase H mapping, EMSA, immunoblot
hnRNP E1	CCCCACGGGCCCUCCUCCCC	-5	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	9122208	Holcik M, Liebhaber SA. (1997) Four highly stable eukaryotic mRNAs assemble 3' untranslated region RNA-protein complexes sharing cis and trans components. Proc Natl Acad Sci U S A. 94(6):2410-2414.		Synthesized sequences.		RNase H mapping, EMSA, immunoblot
hnRNP E1	CCCCACCCUCUUCCCCAAGCCCCACCCUCUUCCCCAAG	-4	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	9160751	Ostareck DH, Ostareck-Lederer A, Wilm M, Thiele BJ, Mann M, Hentze MW. (1997) mRNA silencing in erythroid differentiation: hnRNP K and hnRNP E1 regulate 15-lipoxygenase translation from the 3' end. Cell. 16		Constructs of luciferase gene reporter.	In vivo splicing assay with luciferase gene reporter in HeLa	UV cross-linking. Cell-free translation of different mRNAs.
hnRNP E1	CCCUCCC	-5	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	12011088	Yeap BB, Voon DC, Vivian JP, McCulloch RK, Thomson AM, Giles KM, Czyzyk-Krzeska MF, Furneaux H, Wilce MC, Wilce JA, Leedman PJ. (2002) Novel binding of HuR and poly(C)-binding protein to a conserved UC-rich motif within the 3'-untranslated region of the androgen receptor messenger RNA. J Biol Chem. 277(30):27183-27192.		Sequences deriving from AR [367]. Synthesized oligos.		Mutational analysis, UV cross-linking, Immunoprecipitation, competition assay in LNCaP extracts
hnRNP E1	CCCUCUGCCACCCAGGCAGGCCCUGCCUUCAGCCCUGGCCCAGAGCUGGAACACUCUCUGAGAUGCCCCUCUGCCUGGGCUUAUGCCCUCAGAUGGAGACAUUGGAUGUGGAGCUCCUGCUGGAUGCGUGCCCUGACCCCUGCACCAGCCCUUCCCUGCUUUGAG	-5	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	12600897	Skalweit A, Doller A, Huth A, Kahne T, Persson PB, Thiele BJ. (2003) Posttranscriptional control of renin synthesis: identification of proteins interacting with renin mRNA 3'-untranslated region. Circ Res. 92(4):419-427.		Sequences deriving from REN [5972]		EMSA, UV cross-linking with Calu-6 cell extracts. RNA-affinity chromatography with MALDI-TOF-MS. Western blot.
hnRNP E1	CCCAACCUGGCUCCCUCCCACCCAACCAACUUUCCCCCCAACCC	-10	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	15514164	Thiele BJ, Doller A, Kahne T, Pregla R, Hetzer R, Regitz-Zagrosek V. (2004) RNA-binding proteins heterogeneous nuclear ribonucleoprotein A1, E1, and K are involved in post-transcriptional control of collagen I and III synthesis. Circ Res. 95(11):1058-1066.		Sequences deriving from COL1A1 [1277], COL1A2 [1278], COL3A1 [1281]		EMSA, UV cross-linking and immunoprecipitation with HT1080 cytoplasmic extracts or recombinant protein. MALDI-TOF.
hnRNP E1	CUCCUUCCCCCGCUCCCCCAA	-4	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	15514164	Thiele BJ, Doller A, Kahne T, Pregla R, Hetzer R, Regitz-Zagrosek V. (2004) RNA-binding proteins heterogeneous nuclear ribonucleoprotein A1, E1, and K are involved in post-transcriptional control of collagen I and III synthesis. Circ Res. 95(11):1058-1066.		Sequences deriving from COL1A1 [1277], COL1A2 [1278], COL3A1 [1281]		EMSA, UV cross-linking and immunoprecipitation with HT1080 cytoplasmic extracts or recombinant protein. MALDI-TOF.
hnRNP E1	GCCGCUCCAGCGCCGCGCAGCCACCGCCGCCGC	-5	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	15967798	Thomson AM, Cahill CM, Cho HH, Kassachau KD, Epis MR, Bridges KR, Leedman PJ, Rogers JT. (2005) The acute box cis-element in human heavy ferritin mRNA 5'-untranslated region is a unique translation enhancer that binds poly(C)-binding proteins. J Biol Chem. 280(34):30032-30045.		Sequences deriving from FTH1 [2495]		EMSA, UV cross-linking, western blot with HepG2 cytoplasmic extract or recombinant protein
hnRNP E1	UCCCCAA	-5	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	16854432	Messias AC, Harnisch C, Ostareck-Lederer A, Sattler M, Ostareck DH. (2006) The DICE-binding activity of KH domain 3 of hnRNP K is affected by c-Src-mediated tyrosine phosphorylation. J Mol Biol. 361(3):470-481.		Synthesized sequences		UV cross-linking, Chemical shift mapping (NMR) with recombinant protein.
hnRNP E1	AAAAAAA	-2	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	8917439	Dejgaard K, Leffers H. (1996) Characterisation of the nucleic-acid-binding activity of KH domains. Different properties of different domains. Eur J Biochem. 241(2):425-431.		Synthesized oligos		Homopolymer binding assay with recombinant protein.
hnRNP E1	CCCUUCCC	-10	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	17609276	Toyoda H, Franco D, Fujita K, Paul AV, Wimmer E. (2007) Replication of poliovirus requires binding of the poly(rC) binding protein to the cloverleaf as well as to the adjacent C-rich spacer sequence between the cloverleaf and the internal ribosomal entry site. J Virol. 81(18):10017-10028.		Sequences deriving from Poliovirus 1 (PV1) 5' nontranslated region.		Pull-down assay with recombinant protein and HeLa cell extracts.
hnRNP E1	AAAUUCCC	-10	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	17609276	Toyoda H, Franco D, Fujita K, Paul AV, Wimmer E. (2007) Replication of poliovirus requires binding of the poly(rC) binding protein to the cloverleaf as well as to the adjacent C-rich spacer sequence between the cloverleaf and the internal ribosomal entry site. J Virol. 81(18):10017-10028.		Sequences deriving from Poliovirus 1 (PV1) 5' nontranslated region.		Pull-down assay with recombinant protein and HeLa cell extracts.
hnRNP E1	CCCUUAAA	-10	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	17609276	Toyoda H, Franco D, Fujita K, Paul AV, Wimmer E. (2007) Replication of poliovirus requires binding of the poly(rC) binding protein to the cloverleaf as well as to the adjacent C-rich spacer sequence between the cloverleaf and the internal ribosomal entry site. J Virol. 81(18):10017-10028.		Sequences deriving from Poliovirus 1 (PV1) 5' nontranslated region.		Pull-down assay with recombinant protein and HeLa cell extracts.
hnRNP E1	ACAUUAAA	-1	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	17609276	Toyoda H, Franco D, Fujita K, Paul AV, Wimmer E. (2007) Replication of poliovirus requires binding of the poly(rC) binding protein to the cloverleaf as well as to the adjacent C-rich spacer sequence between the cloverleaf and the internal ribosomal entry site. J Virol. 81(18):10017-10028.		Sequences deriving from Poliovirus 1 (PV1) 5' nontranslated region.		Pull-down assay with recombinant protein and HeLa cell extracts.
hnRNP E1	CAAUUAAA	-2	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	17609276	Toyoda H, Franco D, Fujita K, Paul AV, Wimmer E. (2007) Replication of poliovirus requires binding of the poly(rC) binding protein to the cloverleaf as well as to the adjacent C-rich spacer sequence between the cloverleaf and the internal ribosomal entry site. J Virol. 81(18):10017-10028.		Sequences deriving from Poliovirus 1 (PV1) 5' nontranslated region.		Pull-down assay with recombinant protein and HeLa cell extracts.
hnRNP E1	CCAUUAAA	-5	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	17609276	Toyoda H, Franco D, Fujita K, Paul AV, Wimmer E. (2007) Replication of poliovirus requires binding of the poly(rC) binding protein to the cloverleaf as well as to the adjacent C-rich spacer sequence between the cloverleaf and the internal ribosomal entry site. J Virol. 81(18):10017-10028.		Sequences deriving from Poliovirus 1 (PV1) 5' nontranslated region.		Pull-down assay with recombinant protein and HeLa cell extracts.
hnRNP E1	ACCUUAAA	-7	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	17609276	Toyoda H, Franco D, Fujita K, Paul AV, Wimmer E. (2007) Replication of poliovirus requires binding of the poly(rC) binding protein to the cloverleaf as well as to the adjacent C-rich spacer sequence between the cloverleaf and the internal ribosomal entry site. J Virol. 81(18):10017-10028.		Sequences deriving from Poliovirus 1 (PV1) 5' nontranslated region.		Pull-down assay with recombinant protein and HeLa cell extracts.
hnRNP E1	AAACCAAA	-9	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	17609276	Toyoda H, Franco D, Fujita K, Paul AV, Wimmer E. (2007) Replication of poliovirus requires binding of the poly(rC) binding protein to the cloverleaf as well as to the adjacent C-rich spacer sequence between the cloverleaf and the internal ribosomal entry site. J Virol. 81(18):10017-10028.		Sequences deriving from Poliovirus 1 (PV1) 5' nontranslated region.		Pull-down assay with recombinant protein and HeLa cell extracts.
hnRNP E1	AAAUUCCA	-10	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	17609276	Toyoda H, Franco D, Fujita K, Paul AV, Wimmer E. (2007) Replication of poliovirus requires binding of the poly(rC) binding protein to the cloverleaf as well as to the adjacent C-rich spacer sequence between the cloverleaf and the internal ribosomal entry site. J Virol. 81(18):10017-10028.		Sequences deriving from Poliovirus 1 (PV1) 5' nontranslated region.		Pull-down assay with recombinant protein and HeLa cell extracts.
hnRNP E1	AAAUUACC	-9	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	17609276	Toyoda H, Franco D, Fujita K, Paul AV, Wimmer E. (2007) Replication of poliovirus requires binding of the poly(rC) binding protein to the cloverleaf as well as to the adjacent C-rich spacer sequence between the cloverleaf and the internal ribosomal entry site. J Virol. 81(18):10017-10028.		Sequences deriving from Poliovirus 1 (PV1) 5' nontranslated region.		Pull-down assay with recombinant protein and HeLa cell extracts.
hnRNP E1	AAAUUCAC	-3	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	17609276	Toyoda H, Franco D, Fujita K, Paul AV, Wimmer E. (2007) Replication of poliovirus requires binding of the poly(rC) binding protein to the cloverleaf as well as to the adjacent C-rich spacer sequence between the cloverleaf and the internal ribosomal entry site. J Virol. 81(18):10017-10028.		Sequences deriving from Poliovirus 1 (PV1) 5' nontranslated region.		Pull-down assay with recombinant protein and HeLa cell extracts.
hnRNP E1	CUCUGGGGUUGUACCCACCCCAGAG	-5	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	17609276	Toyoda H, Franco D, Fujita K, Paul AV, Wimmer E. (2007) Replication of poliovirus requires binding of the poly(rC) binding protein to the cloverleaf as well as to the adjacent C-rich spacer sequence between the cloverleaf and the internal ribosomal entry site. J Virol. 81(18):10017-10028.		Sequences deriving from Poliovirus 1 (PV1) 5' nontranslated region.		Pull-down assay with recombinant protein and HeLa cell extracts.
hnRNP E1	AGCCACCUCCCACCCCACCCCA	-5	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	17928403	Lee PT, Liao PC, Chang WC, Tseng JT. (2007) Epidermal growth factor increases the interaction between nucleolin and heterogeneous nuclear ribonucleoprotein K/poly(C) binding protein 1 complex to regulate the gastrin mRNA turnover. Mol Biol Cell. 18(12):5004-5013.		Sequences deriving from mutated GAST [2520] and homopolymers.		EMSA, UV cross-linking, competition assays, western blot, pull-down assay and mass spectrometry with AGS cytoplasmic extracts.
hnRNP E1	CCCAGCCCUGUCCCCUGAAAAACUGA	-5	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	17928403	Lee PT, Liao PC, Chang WC, Tseng JT. (2007) Epidermal growth factor increases the interaction between nucleolin and heterogeneous nuclear ribonucleoprotein K/poly(C) binding protein 1 complex to regulate the gastrin mRNA turnover. Mol Biol Cell. 18(12):5004-5013.		Sequences deriving from mutated GAST [2520] and homopolymers.		EMSA, UV cross-linking, competition assays, western blot, pull-down assay and mass spectrometry with AGS cytoplasmic extracts.
hnRNP E1	GGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCC	-2	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP E1	AAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACC	-2	Gene Name and Synonymous: PCBP1, poly(rC) binding protein 1, HNRPX, HNRPE1, hnRNP-X, hnRNP-E1.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP E2	UUAGGG	-8	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	8321232	Ishikawa F, Matunis MJ, Dreyfuss G, Cech TR. (1993) Nuclear proteins that bind the pre-mRNA 3' splice site sequence r(UUAG/G) and the human telomeric DNA sequence d(TTAGGG)n. Mol Cell Biol. 13(7): 4301-4310.		synthesized oligos		EMSA with Hela nuclear extract and synthesized oligos. EMSA with purified proteins and synthesized oligos.
hnRNP E2	UUAGGA	-6	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	8321232	Ishikawa F, Matunis MJ, Dreyfuss G, Cech TR. (1993) Nuclear proteins that bind the pre-mRNA 3' splice site sequence r(UUAG/G) and the human telomeric DNA sequence d(TTAGGG)n. Mol Cell Biol. 13(7): 4301-4310.		synthesized oligos		EMSA with Hela nuclear extract and synthesized oligos. EMSA with purified proteins and synthesized oligos.
hnRNP E2	UUAGAG	-4	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	8321232	Ishikawa F, Matunis MJ, Dreyfuss G, Cech TR. (1993) Nuclear proteins that bind the pre-mRNA 3' splice site sequence r(UUAG/G) and the human telomeric DNA sequence d(TTAGGG)n. Mol Cell Biol. 13(7): 4301-4310.		synthesized oligos		EMSA with Hela nuclear extract and synthesized oligos. EMSA with purified proteins and synthesized oligos.
hnRNP E2	CCCCCCC	-7	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	7607214	Leffers H, Dejgaard K, Celis JE. (1995) Characterisation of two major cellular poly(rC)-binding human proteins, each containing three K-homologous (KH) domains. Eur J Biochem. 230(2): 447-453.	hnRNP E1 has no affinity to poly(rA). hnRNP E2 and hnRNP K have no affinity to poly(rA) and poly(rU).	homopolymers		Western blot of AMA (human amnion) cell extracts and homoribopolymers. Western blot of recombinant proteins and homoribopolymers.
hnRNP E2	GGGGGGG	-7	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	3386636	Swanson MS, Dreyfuss G. (1988) Classification and purification of proteins of heterogeneous nuclear ribonucleoprotein particles by RNA-binding specificities. Mol Cell Biol. 8(5):2237-2241.		homopolymers		Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract.
hnRNP E2	UCCACUUUCAAGUGACCCCUUACCUACUCACACCACUGCAUUCUCACCCGCAAGCACCUU	-5	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	17664280	Melton AA, Jackson J, Wang J, Lynch KW. (2007) Combinatorial control of signal-induced exon repression by hnRNP L and PSF. Mol Cell Biol. 27(19): 6972-6984.	In this context, hnRNP K, hnRNP D, hnRNP A1, hnRNP A2/B1 do no bind CACUGGAUUCUCACCGGAAGUA and hnRNP A1, hnRNP A2/B1 do no bind CACUGCAUUCUCACCGCAAGCA.	Synthesized sequences. Construct CD45 [PTPRC, 5788] EX3 - INT - EX4 - INT - EX7.	In vitro splicing in JSL1 nuclear extract.	Western blotting analysis of direct RNA affinity purifications of JSL1 nuclear extract.
hnRNP E2	UCCACUUUCAAGUGACCCCUUACCUACUCACACCACUGGAUUCUCACCCGGAAGUACCUU	-2	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	17664280	Melton AA, Jackson J, Wang J, Lynch KW. (2007) Combinatorial control of signal-induced exon repression by hnRNP L and PSF. Mol Cell Biol. 27(19): 6972-6984.	In this context, hnRNP K, hnRNP D, hnRNP A1, hnRNP A2/B1 do no bind CACUGGAUUCUCACCGGAAGUA and hnRNP A1, hnRNP A2/B1 do no bind CACUGCAUUCUCACCGCAAGCA.	Synthesized sequences. Construct CD45 [PTPRC, 5788] EX3 - INT - EX4 - INT - EX7.	In vitro splicing in JSL1 nuclear extract.	Western blotting analysis of direct RNA affinity purifications of JSL1 nuclear extract.
hnRNP E2	CCCAACGGGCCCUCCUCCCC	-5	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	9122208	Holcik M, Liebhaber SA. (1997) Four highly stable eukaryotic mRNAs assemble 3' untranslated region RNA-protein complexes sharing cis and trans components. Proc Natl Acad Sci U S A. 94(6):2410-2414.		Synthesized sequences.		RNase H mapping, EMSA, immunoblot
hnRNP E2	CCCAGCCGGCCCUCCUCCCC	-5	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	9122208	Holcik M, Liebhaber SA. (1997) Four highly stable eukaryotic mRNAs assemble 3' untranslated region RNA-protein complexes sharing cis and trans components. Proc Natl Acad Sci U S A. 94(6):2410-2414.		Synthesized sequences.		RNase H mapping, EMSA, immunoblot
hnRNP E2	CCCCACGGGCCCUCCUCCCC	-5	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	9122208	Holcik M, Liebhaber SA. (1997) Four highly stable eukaryotic mRNAs assemble 3' untranslated region RNA-protein complexes sharing cis and trans components. Proc Natl Acad Sci U S A. 94(6):2410-2414.		Synthesized sequences.		RNase H mapping, EMSA, immunoblot
hnRNP E2	CUCGCCAUGCCGGGAGAACUCUAACUCCCCCAUGGAG	-5	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	11753385	Perrotti D, Cesi V, Trotta R, Guerzoni C, Santilli G, Campbell K, Iervolino A, Condorelli F, Gambacorti-Passerini C, Caligiuri MA, Calabretta B. (2002) BCR-ABL suppresses C/EBPalpha expression through inhibitory action of hnRNP E2. Nat Genet. 30(1):48-58.		Sequences deriving from CEBPA [1050]		RNA affinity chromatography and EMSA supershift in K562 cytoplasmic extracts. Protein sequencing.
hnRNP E2	CCCUCCC	-5	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	12011088	Yeap BB, Voon DC, Vivian JP, McCulloch RK, Thomson AM, Giles KM, Czyzyk-Krzeska MF, Furneaux H, Wilce MC, Wilce JA, Leedman PJ. (2002) Novel binding of HuR and poly(C)-binding protein to a conserved UC-rich motif within the 3'-untranslated region of the androgen receptor messenger RNA. J Biol Chem. 277(30):27183-27192.		Sequences deriving from AR [367]. Synthesized oligos.		Mutational analysis, UV cross-linking, Immunoprecipitation, competition assay in LNCaP extracts
hnRNP E2	UUUUUUU	-7	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	12011088	Yeap BB, Voon DC, Vivian JP, McCulloch RK, Thomson AM, Giles KM, Czyzyk-Krzeska MF, Furneaux H, Wilce MC, Wilce JA, Leedman PJ. (2002) Novel binding of HuR and poly(C)-binding protein to a conserved UC-rich motif within the 3'-untranslated region of the androgen receptor messenger RNA. J Biol Chem. 277(30):27183-27192.		Sequences deriving from AR [367]. Synthesized oligos.		Mutational analysis, UV cross-linking, Immunoprecipitation, competition assay in LNCaP extracts
hnRNP E2	UCCCCA	-5	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	15331611	Du Z, Yu J, Chen Y, Andino R, James TL. (2004) Specific recognition of the C-rich strand of human telomeric DNA and the RNA template of human telomerase by the first KH domain of human poly(C)-binding protein-2. J Biol Chem. 279(46):48126-48134.		Synthesized sequences and HPV-1 IRES.		NMR using recombinant protein
hnRNP E2	CUAACCCUAA	-5	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	15331611	Du Z, Yu J, Chen Y, Andino R, James TL. (2004) Specific recognition of the C-rich strand of human telomeric DNA and the RNA template of human telomerase by the first KH domain of human poly(C)-binding protein-2. J Biol Chem. 279(46):48126-48134.		Synthesized sequences and HPV-1 IRES.		NMR using recombinant protein
hnRNP E2	GGAGGACAUCCCUCACGGGUGACCGUGGUCCUCC	-5	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	15331611	Du Z, Yu J, Chen Y, Andino R, James TL. (2004) Specific recognition of the C-rich strand of human telomeric DNA and the RNA template of human telomerase by the first KH domain of human poly(C)-binding protein-2. J Biol Chem. 279(46):48126-48134.		Synthesized sequences and HPV-1 IRES.		NMR using recombinant protein
hnRNP E2	GGGGUUGUACCCACCCCAC	-5	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	15331611	Du Z, Yu J, Chen Y, Andino R, James TL. (2004) Specific recognition of the C-rich strand of human telomeric DNA and the RNA template of human telomerase by the first KH domain of human poly(C)-binding protein-2. J Biol Chem. 279(46):48126-48134.		Synthesized sequences and HPV-1 IRES.		NMR using recombinant protein
hnRNP E2	GCCGCUCCAGCGCCGCGCAGCCACCGCCGCCGC	-5	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	15967798	Thomson AM, Cahill CM, Cho HH, Kassachau KD, Epis MR, Bridges KR, Leedman PJ, Rogers JT. (2005) The acute box cis-element in human heavy ferritin mRNA 5'-untranslated region is a unique translation enhancer that binds poly(C)-binding proteins. J Biol Chem. 280(34):30032-30045.		Sequences deriving from FTH1 [2495]		EMSA, UV cross-linking, western blot with HepG2 cytoplasmic extract or recombinant protein
hnRNP E2	CCAUUC	-5	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	17451601	Woolaway K, Asai K, Emili A, Cochrane A. (2007) hnRNP E1 and E2 have distinct roles in modulating HIV-1 gene expression. Retrovirology. 4:28.		Sequences deriving from HIV-1 Tat [155871]		Protein affinity purification with HeLa NE, mass spectrometry, western blot.
hnRNP E2	CCCUUCCC	-10	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	17609276	Toyoda H, Franco D, Fujita K, Paul AV, Wimmer E. (2007) Replication of poliovirus requires binding of the poly(rC) binding protein to the cloverleaf as well as to the adjacent C-rich spacer sequence between the cloverleaf and the internal ribosomal entry site. J Virol. 81(18):10017-10028.		Sequences deriving from Poliovirus 1 (PV1) 5' nontranslated region.		Pull-down assay with recombinant protein and HeLa cell extracts.
hnRNP E2	AAAUUCCC	-10	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	17609276	Toyoda H, Franco D, Fujita K, Paul AV, Wimmer E. (2007) Replication of poliovirus requires binding of the poly(rC) binding protein to the cloverleaf as well as to the adjacent C-rich spacer sequence between the cloverleaf and the internal ribosomal entry site. J Virol. 81(18):10017-10028.		Sequences deriving from Poliovirus 1 (PV1) 5' nontranslated region.		Pull-down assay with recombinant protein and HeLa cell extracts.
hnRNP E2	CCCUUAAA	-10	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	17609276	Toyoda H, Franco D, Fujita K, Paul AV, Wimmer E. (2007) Replication of poliovirus requires binding of the poly(rC) binding protein to the cloverleaf as well as to the adjacent C-rich spacer sequence between the cloverleaf and the internal ribosomal entry site. J Virol. 81(18):10017-10028.		Sequences deriving from Poliovirus 1 (PV1) 5' nontranslated region.		Pull-down assay with recombinant protein and HeLa cell extracts.
hnRNP E2	ACAUUAAA	-1	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	17609276	Toyoda H, Franco D, Fujita K, Paul AV, Wimmer E. (2007) Replication of poliovirus requires binding of the poly(rC) binding protein to the cloverleaf as well as to the adjacent C-rich spacer sequence between the cloverleaf and the internal ribosomal entry site. J Virol. 81(18):10017-10028.		Sequences deriving from Poliovirus 1 (PV1) 5' nontranslated region.		Pull-down assay with recombinant protein and HeLa cell extracts.
hnRNP E2	CAAUUAAA	-2	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	17609276	Toyoda H, Franco D, Fujita K, Paul AV, Wimmer E. (2007) Replication of poliovirus requires binding of the poly(rC) binding protein to the cloverleaf as well as to the adjacent C-rich spacer sequence between the cloverleaf and the internal ribosomal entry site. J Virol. 81(18):10017-10028.		Sequences deriving from Poliovirus 1 (PV1) 5' nontranslated region.		Pull-down assay with recombinant protein and HeLa cell extracts.
hnRNP E2	CCAUUAAA	-5	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	17609276	Toyoda H, Franco D, Fujita K, Paul AV, Wimmer E. (2007) Replication of poliovirus requires binding of the poly(rC) binding protein to the cloverleaf as well as to the adjacent C-rich spacer sequence between the cloverleaf and the internal ribosomal entry site. J Virol. 81(18):10017-10028.		Sequences deriving from Poliovirus 1 (PV1) 5' nontranslated region.		Pull-down assay with recombinant protein and HeLa cell extracts.
hnRNP E2	ACCUUAAA	-7	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	17609276	Toyoda H, Franco D, Fujita K, Paul AV, Wimmer E. (2007) Replication of poliovirus requires binding of the poly(rC) binding protein to the cloverleaf as well as to the adjacent C-rich spacer sequence between the cloverleaf and the internal ribosomal entry site. J Virol. 81(18):10017-10028.		Sequences deriving from Poliovirus 1 (PV1) 5' nontranslated region.		Pull-down assay with recombinant protein and HeLa cell extracts.
hnRNP E2	AAACCAAA	-9	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	17609276	Toyoda H, Franco D, Fujita K, Paul AV, Wimmer E. (2007) Replication of poliovirus requires binding of the poly(rC) binding protein to the cloverleaf as well as to the adjacent C-rich spacer sequence between the cloverleaf and the internal ribosomal entry site. J Virol. 81(18):10017-10028.		Sequences deriving from Poliovirus 1 (PV1) 5' nontranslated region.		Pull-down assay with recombinant protein and HeLa cell extracts.
hnRNP E2	AAAUUCCA	-10	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	17609276	Toyoda H, Franco D, Fujita K, Paul AV, Wimmer E. (2007) Replication of poliovirus requires binding of the poly(rC) binding protein to the cloverleaf as well as to the adjacent C-rich spacer sequence between the cloverleaf and the internal ribosomal entry site. J Virol. 81(18):10017-10028.		Sequences deriving from Poliovirus 1 (PV1) 5' nontranslated region.		Pull-down assay with recombinant protein and HeLa cell extracts.
hnRNP E2	AAAUUACC	-9	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	17609276	Toyoda H, Franco D, Fujita K, Paul AV, Wimmer E. (2007) Replication of poliovirus requires binding of the poly(rC) binding protein to the cloverleaf as well as to the adjacent C-rich spacer sequence between the cloverleaf and the internal ribosomal entry site. J Virol. 81(18):10017-10028.		Sequences deriving from Poliovirus 1 (PV1) 5' nontranslated region.		Pull-down assay with recombinant protein and HeLa cell extracts.
hnRNP E2	AAAUUCAC	-3	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	17609276	Toyoda H, Franco D, Fujita K, Paul AV, Wimmer E. (2007) Replication of poliovirus requires binding of the poly(rC) binding protein to the cloverleaf as well as to the adjacent C-rich spacer sequence between the cloverleaf and the internal ribosomal entry site. J Virol. 81(18):10017-10028.		Sequences deriving from Poliovirus 1 (PV1) 5' nontranslated region.		Pull-down assay with recombinant protein and HeLa cell extracts.
hnRNP E2	CUCUGGGGUUGUACCCACCCCAGAG	-5	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	17609276	Toyoda H, Franco D, Fujita K, Paul AV, Wimmer E. (2007) Replication of poliovirus requires binding of the poly(rC) binding protein to the cloverleaf as well as to the adjacent C-rich spacer sequence between the cloverleaf and the internal ribosomal entry site. J Virol. 81(18):10017-10028.		Sequences deriving from Poliovirus 1 (PV1) 5' nontranslated region.		Pull-down assay with recombinant protein and HeLa cell extracts.
hnRNP E2	CGCUCAGCACUACCCCAGUUGAGCU	-5	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	18929541	Zell R, Ihle Y, Effenberger M, Seitz S, Wutzler P, Gorlach M. (2008) Interaction of poly(rC)-binding protein 2 domains KH1 and KH3 with coxsackievirus RNA. Biochem Biophys Res Commun. 377(2):500-503.		Sequences deriving from CVB3 5' UTR		EMSA with recombinant protein
hnRNP E2	CAGGUCGAUGAGUCACCGCAUUCCCCACGGGCGACCGUGGCGGUGGCUGCGUUGGCGGCCUG	-5	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	18929541	Zell R, Ihle Y, Effenberger M, Seitz S, Wutzler P, Gorlach M. (2008) Interaction of poly(rC)-binding protein 2 domains KH1 and KH3 with coxsackievirus RNA. Biochem Biophys Res Commun. 377(2):500-503.		Sequences deriving from CVB3 5' UTR		EMSA with recombinant protein
hnRNP E2	CCUGUGGGUUGAUCCCACCCACAGG	-5	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	18929541	Zell R, Ihle Y, Effenberger M, Seitz S, Wutzler P, Gorlach M. (2008) Interaction of poly(rC)-binding protein 2 domains KH1 and KH3 with coxsackievirus RNA. Biochem Biophys Res Commun. 377(2):500-503.		Sequences deriving from CVB3 5' UTR		EMSA with recombinant protein
hnRNP E2	CUCUGCCCUUCCGU	-5	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	20211135	Eiring AM, Harb JG, Neviani P, Garton C, Oaks JJ, Spizzo R, Liu S, Schwind S, Santhanam R, Hickey CJ, Becker H, Chandler JC, Andino R, Cortes J, Hokland P, Huettner CS, Bhatia R, Roy DC, Liebhaber SA, Caligiuri MA, Marcucci G, Garzon R, Croce CM, Calin GA, Perrotti D. (2010) miR-328 functions as an RNA decoy to modulate hnRNP E2 regulation of mRNA translation in leukemic blasts. Cell. 140(5):652-665.		Sequences deriving from MIR328 [442901]		EMSA, UV cross-linking and immunoprecipitation with human recombinant protein expressed in murine cells.
hnRNP E2	CACUGCAUUCUCACCCGCAAGCA	-5	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	20122404	Motta-Mena LB, Heyd F, Lynch KW. (2010) Context-dependent regulatory mechanism of the splicing factor hnRNP L. Mol Cell. 37(2):223-234.		Constructs of wt or mutated PTPRC [5788] EX3 - INT3 - EX4 - INT4 - EX7 and EX3 - INT3 - EX5 - INT5 - EX7.	In vitro splicing in JSL1 NE	Mutational analysis. EMSA with recombinant proteins or JSL1 NE. Pull-down and western blotting with JSL1 NE.
hnRNP E2	GGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCC	-2	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP E2	AAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACC	-2	Gene Name and Synonymous: PCBP2, poly(rC) binding protein 2, HNRPE2, hnRNP-E2, MGC110998.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP F	GGGGGGG	-7	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	7512260	Matunis MJ, Xing J, Dreyfuss G. (1994) The hnRNP F protein: unique primary structure, nucleic acid-binding properties, and subcellular localization. Nucleic Acids Res. 22(6): 1059-67.		homopolymers		Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract.
hnRNP F	GGGGGCUG	-5	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	11003644	Markovtsov V, Nikolic JM, Goldman JA, Turck CW, Chou MY, Black DL. (2000) Cooperative assembly of an hnRNP complex induced by a tissue-specific homolog of polypyrimidine tract binding protein. Mol Cell Biol. 20(20):7463-7479.		Sequences from position 37 to 70 downstream murine c-src [20779] EX_N1 for EMSA and UV crosslink. Synthesized 37-mer RNA for RNA affinity purification. Construct of EX3 - INT - EX4 murine c-src for in vitro splicing.	In vitro splicing with WERI-1 extracts.	RNA affinity purification with HeLa or WERI-1 nuclear extracts. UV crosslink in HeLa and in WERI-1 extracts. EMSA with purified protein. Immunoprecipitation and Western blot.
hnRNP F	GGAGGA	-5	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	12612063	Rooke N, Markovtsov V, Cagavi E, Black DL. (2003) Roles for SR proteins and hnRNP A1 in the regulation of c-src exon N1. Mol Cell Biol. 23(6):1874-1884.		Construct of c-src [20779] EX_N1.	In vitro splicing with Weri-1, Weri-1 S100 and HeLa nuclear extracts.	UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts.
hnRNP F	AAGGGGAA	5	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	15828859	Han K, Yeo G, An P, Burge CB, Grabowski PJ. (2005) A combinatorial code for splicing silencing: UAGG and GGGG motifs. PLoS Biol. 3(5):e158.	In this context, hnRNP A1 was shown to mediate silencing while hnRNP H1, H2, F enhance exon inclusion.	Synthesized sequences based on GRIN1 [2902] EX19.		Mutational analysis, UV crosslinking, immunoprecipitation in HeLa nuclear extracts.
hnRNP F	AGGGA	-8	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	19404736	Millevoi S, Bernat S, Telly D, Fouque F, Gladieff L, Favre G, Vagner S, Toulas C. (2009) The c.5242C>A BRCA1 missense variant induces exon skipping by increasing splicing repressors binding. Breast Cancer Res Treat. 120(2):391-399.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19. WT or mutated exon 18 RNA substrates.	In vitro splicing in HeLa nuclear extract	Mutational analysis, RNA affinity chromatography, UV cross-linking, immunoprecipitation with HeLa nuclear extract.
hnRNP F	CGGGC	-2	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP F	AAGGUG	-5	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	12612063	Rooke N, Markovtsov V, Cagavi E, Black DL. (2003) Roles for SR proteins and hnRNP A1 in the regulation of c-src exon N1. Mol Cell Biol. 23(6):1874-1884.		Construct of c-src [20779] EX_N1.	In vitro splicing with Weri-1, Weri-1 S100 and HeLa nuclear extracts.	UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts.
hnRNP F	GGGGGAGGUGUGGG	-5	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP F	AGGGGAGGUGUGGG	-6	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP F	GAGGGAGGUGUGGG	-3	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP F	GGAGGAGGUGUGGG	-1	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP F	GGGAGAGGUGUGGG	-4	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP F	GGGGAAGGUGUGGG	-2	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP F	GGGGGAAGUGUGGG	-3	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP F	GGGGGAGAUGUGGG	-4	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP F	GGGGGAGGUAUGGG	-4	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP F	GGGGGAGGUGUAGG	-2	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP F	GGGGGAGGUGUGAG	-10	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP F	GGGGGAGGUGUGGA	-7	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP F	GGGGGAGGUGUGAA	-5	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP F	GGGGGAGGUGUAAG	-3	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP F	GGGGGAAAUGUGGG	-5	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP F	GGGAAAGGUGUGGG	-3	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP F	GGAAGAGGUGUGGG	-1	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP F	GAAGGAGGUGUGGG	-2	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP F	AAGGGAGGUGUGGG	-2	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP F	CGAUGGGAA	-5	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	16885237	Dominguez C, Allain FH. (2006) NMR structure of the three quasi RNA recognition motifs (qRRMs) of human hnRNP F and interaction studies with Bcl-x G-tract RNA: a novel mode of RNA recognition. Nucleic Acids Res. 34(13):3634-3645.		Synthesized sequences.		NMR titration using recombinant protein
hnRNP F	CGGGAUGGGGUA	-10	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	16885237	Dominguez C, Allain FH. (2006) NMR structure of the three quasi RNA recognition motifs (qRRMs) of human hnRNP F and interaction studies with Bcl-x G-tract RNA: a novel mode of RNA recognition. Nucleic Acids Res. 34(13):3634-3645.		Synthesized sequences.		NMR titration using recombinant protein
hnRNP F	CUGGGGU	-5	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	16885237	Dominguez C, Allain FH. (2006) NMR structure of the three quasi RNA recognition motifs (qRRMs) of human hnRNP F and interaction studies with Bcl-x G-tract RNA: a novel mode of RNA recognition. Nucleic Acids Res. 34(13):3634-3645.		Synthesized sequences.		NMR titration using recombinant protein
hnRNP F	UGGGA	-5	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	16885237	Dominguez C, Allain FH. (2006) NMR structure of the three quasi RNA recognition motifs (qRRMs) of human hnRNP F and interaction studies with Bcl-x G-tract RNA: a novel mode of RNA recognition. Nucleic Acids Res. 34(13):3634-3645.		Synthesized sequences.		NMR titration using recombinant protein
hnRNP F	UGGGGU	-5	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	12228232	Romano M, Marcucci R, Buratti E, Ayala YM, Sebastio G, Baralle FE. (2002) Regulation of 3' splice site selection in the 844ins68 polymorphism of the cystathionine beta-synthase gene. J Biol Chem. 277(46):43821-43829.		Construct of CBS [875] EX5 - INT5 - EX6 - INT6 - EX7 - INT7 - EX8 - INT8 - EX9	In vivo splicing in HeLa	Mutation assay, REMSA, UV cross-linking in HeLa nuclear extract, Immunoblotting
hnRNP F	GGCGGCCAGAGGGUGUGCGGAGCUGGUGGGGAGGAGCCUGGAGAGAAGGGGCAGAGCUGGGGGCUGAGGGAGACCCCCCC	-2	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	11421362	Hastings ML, Wilson CM, Munroe SH. (2001) A purine-rich intronic element enhances alternative splicing of thyroid hormone receptor mRNA. RNA. 7(6):859-874.		Constructs of THRA [7067] EX7 - INT7 - EX8 - INT8 - EX9 - INT9 - EX10	In vitro splicing with HeLa NE	UV cross-linking, northwestern blotting, immunoprecipitation with HeLa NE and recombinant proteins.
hnRNP F	AGGGUUGAGGGGAGCAGGGU	-7	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	15208309	Expert-Bezancon A, Sureau A, Durosay P, Salesse R, Groeneveld H, Lecaer JP, Marie J. (2004) hnRNP A1 and the SR proteins ASF/SF2 and SC35 have antagonistic functions in splicing of beta-tropomyosin exon 6B. J Biol Chem. 279(37):38249-38259.		Sequences deriving from TPM3 [396430] and synthesized sequences. Construct of chicken TPM3 [396430] EX6B - INT7 - EX7.	In vitro splicing in HeLa NE	EMSA with recombinant protein. RNA affinity chromatography and immunoprecipitation in HeLa NE
hnRNP F	CGGGUUGACGGGAGCACGGU	-5	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	15208309	Expert-Bezancon A, Sureau A, Durosay P, Salesse R, Groeneveld H, Lecaer JP, Marie J. (2004) hnRNP A1 and the SR proteins ASF/SF2 and SC35 have antagonistic functions in splicing of beta-tropomyosin exon 6B. J Biol Chem. 279(37):38249-38259.		Sequences deriving from TPM3 [396430] and synthesized sequences. Construct of chicken TPM3 [396430] EX6B - INT7 - EX7.	In vitro splicing in HeLa NE	EMSA with recombinant protein. RNA affinity chromatography and immunoprecipitation in HeLa NE
hnRNP F	AGUGUUGAGUGGAGCAGUGGU	-5	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	15208309	Expert-Bezancon A, Sureau A, Durosay P, Salesse R, Groeneveld H, Lecaer JP, Marie J. (2004) hnRNP A1 and the SR proteins ASF/SF2 and SC35 have antagonistic functions in splicing of beta-tropomyosin exon 6B. J Biol Chem. 279(37):38249-38259.		Sequences deriving from TPM3 [396430] and synthesized sequences. Construct of chicken TPM3 [396430] EX6B - INT7 - EX7.	In vitro splicing in HeLa NE	EMSA with recombinant protein. RNA affinity chromatography and immunoprecipitation in HeLa NE
hnRNP F	UGGGC	-2	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP F	AGGGC	-4	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP F	AGGGU	-6	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP F	AGGGG	-4	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP F	GGGGG	-4	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP F	CGGGGGGGGC	-6	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP F	AGGGGAGGGG	-6	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP F	AGGGAAGGGA	-8	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP F	AGGGAAGGGAAGGGAAGGGA	-8	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP F	AGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGA	-8	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP F	CGAGAGCGUCGGUAUUAAGCGGGGGAGAAUUAGAUAAAUG	-5	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP F	CAGAAGGGGAGGGGUUCCA	-10	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	17567613	Wang E, Dimova N, Cambi F. (2007) PLP/DM20 ratio is regulated by hnRNPH and F and a novel G-rich enhancer in oligodendrocytes. Nucleic Acids Res. 35(12):4164-4178.		Sequences deriving from PLP1 [5354]. Constructs of PLP1 [5354] INT3 - EX3A - E3B - INT4.	In vivo splicing in oligodendroglial precursors.	RNA-affinity precipitations of oligodendroglial precursor NE, mass spectroscopy, western blot. siRNA
hnRNP F	AACAAGGGGUGGGGGAAAA	-10	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	17567613	Wang E, Dimova N, Cambi F. (2007) PLP/DM20 ratio is regulated by hnRNPH and F and a novel G-rich enhancer in oligodendrocytes. Nucleic Acids Res. 35(12):4164-4178.		Sequences deriving from PLP1 [5354]. Constructs of PLP1 [5354] INT3 - EX3A - E3B - INT4.	In vivo splicing in oligodendroglial precursors.	RNA-affinity precipitations of oligodendroglial precursor NE, mass spectroscopy, western blot. siRNA
hnRNP F	GGGGAAUAUACGUGCUUGGCGGGUAAUUCUAUUGGGA	-5	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	18573884	Mauger DM, Lin C, Garcia-Blanco MA. (2008) hnRNP H and hnRNP F complex with Fox2 to silence fibroblast growth factor receptor 2 exon IIIc. Mol Cell Biol. 28(17):5403-5419.		Constructs of FGFR2 [2263] EX7 - INT7 - EX8 - INT8 - EX9 - INT9 - EX10.	In vivo splicing in HEK293	Splicing assays with wt and mutant minigenes. siRNA.
hnRNP F	GGGAAUGUGGG	-5	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	19506027	Millevoi S, Decorsiere A, Loulergue C, Iacovoni J, Bernat S, Antoniou M, Vagner S. (2009) A physical and functional link between splicing factors promotes pre-mRNA 3' end processing. Nucleic Acids Res. 37(14):4672-4683.		Sequences deriving from HBB [3043]		UV cross-linking, immunoprecipitation with HeLa NE and recombinant protein
hnRNP F	AAGGCGAA	1	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	15828859	Han K, Yeo G, An P, Burge CB, Grabowski PJ. (2005) A combinatorial code for splicing silencing: UAGG and GGGG motifs. PLoS Biol. 3(5):e158.	In this context, hnRNP A1 was shown to mediate silencing while hnRNP H1, H2, F enhance exon inclusion.	Synthesized sequences based on GRIN1 [2902] EX19.		Mutational analysis, UV crosslinking, immunoprecipitation in HeLa nuclear extracts.
hnRNP F	CGGGA	-5	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP F	GGGGA	-4	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	16885237	Dominguez C, Allain FH. (2006) NMR structure of the three quasi RNA recognition motifs (qRRMs) of human hnRNP F and interaction studies with Bcl-x G-tract RNA: a novel mode of RNA recognition. Nucleic Acids Res. 34(13):3634-3645.		Synthesized sequences.		NMR titration using recombinant protein
hnRNP F	UGGGG	-3	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	16885237	Dominguez C, Allain FH. (2006) NMR structure of the three quasi RNA recognition motifs (qRRMs) of human hnRNP F and interaction studies with Bcl-x G-tract RNA: a novel mode of RNA recognition. Nucleic Acids Res. 34(13):3634-3645.		Synthesized sequences.		NMR titration using recombinant protein
hnRNP F	GGGGU	-2	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	16885237	Dominguez C, Allain FH. (2006) NMR structure of the three quasi RNA recognition motifs (qRRMs) of human hnRNP F and interaction studies with Bcl-x G-tract RNA: a novel mode of RNA recognition. Nucleic Acids Res. 34(13):3634-3645.		Synthesized sequences.		NMR titration using recombinant protein
hnRNP F	GGGGC	-2	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	12228232	Romano M, Marcucci R, Buratti E, Ayala YM, Sebastio G, Baralle FE. (2002) Regulation of 3' splice site selection in the 844ins68 polymorphism of the cystathionine beta-synthase gene. J Biol Chem. 277(46):43821-43829.		Construct of CBS [875] EX5 - INT5 - EX6 - INT6 - EX7 - INT7 - EX8 - INT8 - EX9	In vivo splicing in HeLa	Mutation assay, REMSA, UV cross-linking in HeLa nuclear extract, Immunoblotting
hnRNP F	AGGGAU	-5	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	20526337	Dominguez C, Fisette JF, Chabot B, Allain FH. (2010) Structural basis of G-tract recognition and encaging by hnRNP F quasi-RRMs. Nat Struct Mol Biol. 17(7):853-861.		Synthesized sequences. Constructs of wt and mutant BCL2L1 [598] EX2 - INT2 - EX3.	In vitro splicing assays in HeLa nuclear extracts.	NMR spectroscopy. In vitro splicing assays in HeLa nuclear extracts with increasing amount of splicing factor.
hnRNP F	GGGAUGGGGUAAACUGGGG	5	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	20526337	Dominguez C, Fisette JF, Chabot B, Allain FH. (2010) Structural basis of G-tract recognition and encaging by hnRNP F quasi-RRMs. Nat Struct Mol Biol. 17(7):853-861.		Synthesized sequences. Constructs of wt and mutant BCL2L1 [598] EX2 - INT2 - EX3.	In vitro splicing assays in HeLa nuclear extracts.	NMR spectroscopy. In vitro splicing assays in HeLa nuclear extracts with increasing amount of splicing factor.
hnRNP F	GGAGGGUUAGGGUUAGGGUUAGGGUUA	-5	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	23275549	Samatanga B, Dominguez C, Jelesarov I, Allain FH. (2013) The high kinetic stability of a G-quadruplex limits hnRNP F qRRM3 binding to G-tract RNA. Nucleic Acids Res. 41(4):2505-2516.		Synthesized sequences		NMR spectroscopy, isothermal titration calorimetry
hnRNP F	GAGUUAGGGUUAGGGUUAGGGUUAGGGUUA	-5	Gene Name and Synonymous: HNRNPF, heterogeneous nuclear ribonucleoprotein F, HNRPF, mcs94-1, MGC110997, OK/SW-cl.23.	23275549	Samatanga B, Dominguez C, Jelesarov I, Allain FH. (2013) The high kinetic stability of a G-quadruplex limits hnRNP F qRRM3 binding to G-tract RNA. Nucleic Acids Res. 41(4):2505-2516.		Synthesized sequences		NMR spectroscopy, isothermal titration calorimetry
hnRNP G	GGGUACGACGGAUAUCGUGGGGGGGGAAAUUGCUUUCGGUUCCGACUCUG	-5	Gene Name and Synonymous: RBMX, RNA binding motif protein X-linked, RNMX, HNRPG, RBMXP1, RBMXRT, hnRNP-G.	21327109	Kanhoush R, Beenders B, Perrin C, Moreau J, Bellini M, Penrad-Mobayed M. (2010) Novel domains in the hnRNP G/RBMX protein with distinct roles in RNA binding and targeting nascent transcripts. Nucleus. 1(1):109-122.		Synthesized sequences		1D- and 2D-Northwestern assays, Westernblot with HeLa NE
hnRNP G	AUCAAA	5	Gene Name and Synonymous: RBMX, RNA binding motif protein X-linked, RNMX, HNRPG, RBMXP1, RBMXRT, hnRNP-G.	24692659	Moursy A, Allain FH, Clery A. (2014) Characterization of the RNA recognition mode of hnRNP G extends its role in SMN2 splicing regulation. Nucleic Acids Res.		Sequences deriving from SMN2 [6607]. Synthetic sequences.		NMR spectroscopy, isothermal titration calorimetry. EMSA with recombinat protein and other competitor protein (HTra2beta1).
hnRNP G	UAAGAC	5	Gene Name and Synonymous: RBMX, RNA binding motif protein X-linked, RNMX, HNRPG, RBMXP1, RBMXRT, hnRNP-G.	24692659	Moursy A, Allain FH, Clery A. (2014) Characterization of the RNA recognition mode of hnRNP G extends its role in SMN2 splicing regulation. Nucleic Acids Res.		Sequences deriving from SMN2 [6607]. Synthetic sequences.		NMR spectroscopy, isothermal titration calorimetry. EMSA with recombinat protein and other competitor protein (HTra2beta1).
hnRNP G	ACCAAA	5	Gene Name and Synonymous: RBMX, RNA binding motif protein X-linked, RNMX, HNRPG, RBMXP1, RBMXRT, hnRNP-G.	24692659	Moursy A, Allain FH, Clery A. (2014) Characterization of the RNA recognition mode of hnRNP G extends its role in SMN2 splicing regulation. Nucleic Acids Res.		Sequences deriving from SMN2 [6607]. Synthetic sequences.		NMR spectroscopy, isothermal titration calorimetry. EMSA with recombinat protein and other competitor protein (HTra2beta1).
hnRNP G	UCAAAA	5	Gene Name and Synonymous: RBMX, RNA binding motif protein X-linked, RNMX, HNRPG, RBMXP1, RBMXRT, hnRNP-G.	24692659	Moursy A, Allain FH, Clery A. (2014) Characterization of the RNA recognition mode of hnRNP G extends its role in SMN2 splicing regulation. Nucleic Acids Res.		Sequences deriving from SMN2 [6607]. Synthetic sequences.		NMR spectroscopy, isothermal titration calorimetry. EMSA with recombinat protein and other competitor protein (HTra2beta1).
hnRNP G	AAAAU	5	Gene Name and Synonymous: RBMX, RNA binding motif protein X-linked, RNMX, HNRPG, RBMXP1, RBMXRT, hnRNP-G.	24692659	Moursy A, Allain FH, Clery A. (2014) Characterization of the RNA recognition mode of hnRNP G extends its role in SMN2 splicing regulation. Nucleic Acids Res.		Sequences deriving from SMN2 [6607]. Synthetic sequences.		NMR spectroscopy, isothermal titration calorimetry. EMSA with recombinat protein and other competitor protein (HTra2beta1).
hnRNP G	AUCCCA	1	Gene Name and Synonymous: RBMX, RNA binding motif protein X-linked, RNMX, HNRPG, RBMXP1, RBMXRT, hnRNP-G.	24692659	Moursy A, Allain FH, Clery A. (2014) Characterization of the RNA recognition mode of hnRNP G extends its role in SMN2 splicing regulation. Nucleic Acids Res.		Sequences deriving from SMN2 [6607]. Synthetic sequences.		NMR spectroscopy, isothermal titration calorimetry. EMSA with recombinat protein and other competitor protein (HTra2beta1).
hnRNP G	AUCCCC	1	Gene Name and Synonymous: RBMX, RNA binding motif protein X-linked, RNMX, HNRPG, RBMXP1, RBMXRT, hnRNP-G.	24692659	Moursy A, Allain FH, Clery A. (2014) Characterization of the RNA recognition mode of hnRNP G extends its role in SMN2 splicing regulation. Nucleic Acids Res.		Sequences deriving from SMN2 [6607]. Synthetic sequences.		NMR spectroscopy, isothermal titration calorimetry. EMSA with recombinat protein and other competitor protein (HTra2beta1).
hnRNP G	GGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCC	-2	Gene Name and Synonymous: RBMX, RNA binding motif protein X-linked, RNMX, HNRPG, RBMXP1, RBMXRT, hnRNP-G.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP G	AAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACC	-2	Gene Name and Synonymous: RBMX, RNA binding motif protein X-linked, RNMX, HNRPG, RBMXP1, RBMXRT, hnRNP-G.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP H1	CGGGA	-5	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	11847131	Caputi M, Zahler AM. (2002) SR proteins and hnRNP H regulate the splicing of the HIV-1 tev-specific exon 6D. EMBO J. 21(4): 845-855.		Construct of HIV-1 env [155971] EX_6D and part of flanking introns.	In vitro splicing with HeLa nuclear extracts	RNA affinity chromatography assay and immunoblot.
hnRNP H1	AUUGGGUGU	-8	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	11526107	Jacquenet S, Mereau A, Bilodeau PS, Damier L, Stoltzfus CM, Branlant C. (2001) A second exon splicing silencer within human immunodeficiency virus type 1 tat exon 2 represses splicing of Tat mRNA and binds protein hnRNP H. J Biol Chem. 276(44): 40464-75.		Constructs of HIV-1 Tat [155871] EX2.	In vitro splicing with HeLa nuclear extracts. In vivo splicing in HeLa.	EMSA, UV crosslink, immunoprecipitation and immunoblot.
hnRNP H1	GGGGGGG	-7	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	7512260	Matunis MJ, Xing J, Dreyfuss G. (1994) The hnRNP F protein: unique primary structure, nucleic acid-binding properties, and subcellular localization. Nucleic Acids Res. 22(6): 1059-67.		homopolymers		Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract.
hnRNP H1	GGGGGCUG	-5	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	11003644	Markovtsov V, Nikolic JM, Goldman JA, Turck CW, Chou MY, Black DL. (2000) Cooperative assembly of an hnRNP complex induced by a tissue-specific homolog of polypyrimidine tract binding protein. Mol Cell Biol. 20(20):7463-7479.		Sequences from position 37 to 70 downstream murine c-src [20779] EX_N1 for EMSA and UV crosslink. Synthesized 37-mer RNA for RNA affinity purification. Construct of EX3 - INT - EX4 murine c-src for in vitro splicing.	In vitro splicing with WERI-1 extracts.	RNA affinity purification with HeLa or WERI-1 nuclear extracts. UV crosslink in HeLa and in WERI-1 extracts. EMSA with purified protein. Immunoprecipitation and Western blot.
hnRNP H1	UGUGGG	-5	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	10072387	Chen CD, Kobayashi R, Helfman DM. (1999) Binding of hnRNP H to an exonic splicing silencer is involved in the regulation of alternative splicing of the rat beta-tropomyosin gene. Genes Dev. 13(5):593-606.		Construct of rat beta-tropomyosin Tpm2 [500450] EX5-INT5-EX7	In vitro splicing in HeLa nuclear extracts.	UV crosslink, competition assays, immunoblot, immunodepletion in HeLa nuclear extracts.
hnRNP H1	GGAGGA	-5	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	12612063	Rooke N, Markovtsov V, Cagavi E, Black DL. (2003) Roles for SR proteins and hnRNP A1 in the regulation of c-src exon N1. Mol Cell Biol. 23(6):1874-1884.		Construct of c-src [20779] EX_N1.	In vitro splicing with Weri-1, Weri-1 S100 and HeLa nuclear extracts.	UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts.
hnRNP H1	CGAAUCGACAAAGGGGAGGAAGUGGGAGAAA	-5	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	10934202	Fogel BL, McNally MT. (2000) A cellular protein, hnRNP H, binds to the negative regulator of splicing element from Rous sarcoma virus. J Biol Chem. 275(41):32371-32378.		Sequence and variants of NRS5' region Rous sarcoma virus.		UV crosslink in HeLa nuclear extracts. RNA affinity selection with HeLa extracts. Immunoprecipitation, EMSA supershift.
hnRNP H1	AAGGGGAA	5	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	15828859	Han K, Yeo G, An P, Burge CB, Grabowski PJ. (2005) A combinatorial code for splicing silencing: UAGG and GGGG motifs. PLoS Biol. 3(5):e158.	In this context, hnRNP A1 was shown to mediate silencing while hnRNP H1, H2, F enhance exon inclusion.	Synthesized sequences based on GRIN1 [2902] EX19.		Mutational analysis, UV crosslinking, immunoprecipitation in HeLa nuclear extracts.
hnRNP H1	AGGGA	-8	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	19404736	Millevoi S, Bernat S, Telly D, Fouque F, Gladieff L, Favre G, Vagner S, Toulas C. (2009) The c.5242C>A BRCA1 missense variant induces exon skipping by increasing splicing repressors binding. Breast Cancer Res Treat. 120(2):391-399.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19. WT or mutated exon 18 RNA substrates.	In vitro splicing in HeLa nuclear extract	Mutational analysis, RNA affinity chromatography, UV cross-linking, immunoprecipitation with HeLa nuclear extract.
hnRNP H1	CGGGC	-6	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H1	AUCGGGCGU	-5	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	11526107	Jacquenet S, Mereau A, Bilodeau PS, Damier L, Stoltzfus CM, Branlant C. (2001) A second exon splicing silencer within human immunodeficiency virus type 1 tat exon 2 represses splicing of Tat mRNA and binds protein hnRNP H. J Biol Chem. 276(44): 40464-75.		Constructs of HIV-1 Tat [155871] EX2.	In vitro splicing with HeLa nuclear extracts. In vivo splicing in HeLa.	EMSA, UV crosslink, immunoprecipitation and immunoblot.
hnRNP H1	AAGGUG	-5	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	12612063	Rooke N, Markovtsov V, Cagavi E, Black DL. (2003) Roles for SR proteins and hnRNP A1 in the regulation of c-src exon N1. Mol Cell Biol. 23(6):1874-1884.		Construct of c-src [20779] EX_N1.	In vitro splicing with Weri-1, Weri-1 S100 and HeLa nuclear extracts.	UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts.
hnRNP H1	UGGGC	-5	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H1	UGGGG	-5	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	12732620	Pagani F, Buratti E, Stuani C, Baralle FE. (2003) Missense, nonsense, and neutral mutations define juxtaposed regulatory elements of splicing in cystic fibrosis transmembrane regulator exon 9. J Biol Chem. 278(29):26580-26588.		Construct of CFTR [1080] EX8 - INT8 - EX9 - INT9 - EX10	In vivo splicing in Hep3B cells of WT and mutant CFTR constructs.	UV cross-linking, pull-down assay, immunoblotting in HeLa nuclear extracts with wt and mutated RNAs.
hnRNP H1	GAUCACUGGGGUGGAUCAUCCAGGUGGGGCUUUU	-5	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	16396608	Martinez-Contreras R, Fisette JF, Nasim FU, Madden R, Cordeau M, Chabot B. (2006) Intronic binding sites for hnRNP A/B and hnRNP F/H proteins stimulate pre-mRNA splicing. PLoS Biol. 4(2):e21.		Constructs of hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - EXL2_[Adenovirus] and hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - BCL2L1 [598] EX3	In vitro splicing with HeLa NE	Immunoprecipitation, Gel shift and RNase H protection assays
hnRNP H1	GGGUCGAGGGG	-5	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	16396608	Martinez-Contreras R, Fisette JF, Nasim FU, Madden R, Cordeau M, Chabot B. (2006) Intronic binding sites for hnRNP A/B and hnRNP F/H proteins stimulate pre-mRNA splicing. PLoS Biol. 4(2):e21.		Constructs of hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - EXL2_[Adenovirus] and hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - BCL2L1 [598] EX3	In vitro splicing with HeLa NE	Immunoprecipitation, Gel shift and RNase H protection assays
hnRNP H1	GAUCACUGGGGUGGAUCAU	-1	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	19926721	Fisette JF, Toutant J, Dugre-Brisson S, Desgroseillers L, Chabot B. (2010) hnRNP A1 and hnRNP H can collaborate to modulate 5' splice site selection. RNA. 16(1):228-238.		Constructs of hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - EXL2_[Adenovirus] and hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - BCL2L1 [598] EX3	In vitro splicing with HeLa NE	Filter binding assay, EMSA using recombinant protein
hnRNP H1	GAUCACUGUGGUGGAUCAUCCAGGUGUGGCUUUU	-1	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	19926721	Fisette JF, Toutant J, Dugre-Brisson S, Desgroseillers L, Chabot B. (2010) hnRNP A1 and hnRNP H can collaborate to modulate 5' splice site selection. RNA. 16(1):228-238.		Constructs of hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - EXL2_[Adenovirus] and hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - BCL2L1 [598] EX3	In vitro splicing with HeLa NE	Filter binding assay, EMSA using recombinant protein
hnRNP H1	GAUCACUGUGGUGGAUCAUCCAGGUGGGGCUUUU	-1	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	19926721	Fisette JF, Toutant J, Dugre-Brisson S, Desgroseillers L, Chabot B. (2010) hnRNP A1 and hnRNP H can collaborate to modulate 5' splice site selection. RNA. 16(1):228-238.		Constructs of hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - EXL2_[Adenovirus] and hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - BCL2L1 [598] EX3	In vitro splicing with HeLa NE	Filter binding assay, EMSA using recombinant protein
hnRNP H1	CCAUGGUUUGGGAGUGGGAAGGUGGGGAG	-5	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	19926721	Fisette JF, Toutant J, Dugre-Brisson S, Desgroseillers L, Chabot B. (2010) hnRNP A1 and hnRNP H can collaborate to modulate 5' splice site selection. RNA. 16(1):228-238.		Constructs of hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - EXL2_[Adenovirus] and hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - BCL2L1 [598] EX3	In vitro splicing with HeLa NE	Filter binding assay, EMSA using recombinant protein
hnRNP H1	CCAUGGUUUGGGGGCAGUAGUUGG	-8	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	19926721	Fisette JF, Toutant J, Dugre-Brisson S, Desgroseillers L, Chabot B. (2010) hnRNP A1 and hnRNP H can collaborate to modulate 5' splice site selection. RNA. 16(1):228-238.		Constructs of hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - EXL2_[Adenovirus] and hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - BCL2L1 [598] EX3	In vitro splicing with HeLa NE	Filter binding assay, EMSA using recombinant protein
hnRNP H1	UGGGGU	-5	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	12228232	Romano M, Marcucci R, Buratti E, Ayala YM, Sebastio G, Baralle FE. (2002) Regulation of 3' splice site selection in the 844ins68 polymorphism of the cystathionine beta-synthase gene. J Biol Chem. 277(46):43821-43829.		Construct of CBS [875] EX5 - INT5 - EX6 - INT6 - EX7 - INT7 - EX8 - INT8 - EX9	In vivo splicing in HeLa	Mutation assay, REMSA, UV cross-linking in HeLa nuclear extract, Immunoblotting
hnRNP H1	GGCGGCCAGAGGGUGUGCGGAGCUGGUGGGGAGGAGCCUGGAGAGAAGGGGCAGAGCUGGGGGCUGAGGGAGACCCCCCC	-10	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	11421362	Hastings ML, Wilson CM, Munroe SH. (2001) A purine-rich intronic element enhances alternative splicing of thyroid hormone receptor mRNA. RNA. 7(6):859-874.		Constructs of THRA [7067] EX7 - INT7 - EX8 - INT8 - EX9 - INT9 - EX10	In vitro splicing with HeLa NE	UV cross-linking, northwestern blotting, immunoprecipitation with HeLa NE and recombinant proteins.
hnRNP H1	AGGGUUGAGGGGAGCAGGGU	-7	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	15208309	Expert-Bezancon A, Sureau A, Durosay P, Salesse R, Groeneveld H, Lecaer JP, Marie J. (2004) hnRNP A1 and the SR proteins ASF/SF2 and SC35 have antagonistic functions in splicing of beta-tropomyosin exon 6B. J Biol Chem. 279(37):38249-38259.		Sequences deriving from TPM3 [396430] and synthesized sequences. Construct of chicken TPM3 [396430] EX6B - INT7 - EX7.	In vitro splicing in HeLa NE	EMSA with recombinant protein. RNA affinity chromatography and immunoprecipitation in HeLa NE
hnRNP H1	CGGGUUGACGGGAGCACGGU	-5	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	15208309	Expert-Bezancon A, Sureau A, Durosay P, Salesse R, Groeneveld H, Lecaer JP, Marie J. (2004) hnRNP A1 and the SR proteins ASF/SF2 and SC35 have antagonistic functions in splicing of beta-tropomyosin exon 6B. J Biol Chem. 279(37):38249-38259.		Sequences deriving from TPM3 [396430] and synthesized sequences. Construct of chicken TPM3 [396430] EX6B - INT7 - EX7.	In vitro splicing in HeLa NE	EMSA with recombinant protein. RNA affinity chromatography and immunoprecipitation in HeLa NE
hnRNP H1	AGUGUUGAGUGGAGCAGUGGU	-5	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	15208309	Expert-Bezancon A, Sureau A, Durosay P, Salesse R, Groeneveld H, Lecaer JP, Marie J. (2004) hnRNP A1 and the SR proteins ASF/SF2 and SC35 have antagonistic functions in splicing of beta-tropomyosin exon 6B. J Biol Chem. 279(37):38249-38259.		Sequences deriving from TPM3 [396430] and synthesized sequences. Construct of chicken TPM3 [396430] EX6B - INT7 - EX7.	In vitro splicing in HeLa NE	EMSA with recombinant protein. RNA affinity chromatography and immunoprecipitation in HeLa NE
hnRNP H1	GGGAGGAAGAAAUAGAAGAUGCAGAAGAGG	-5	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	16000324	Venables JP, Bourgeois CF, Dalgliesh C, Kister L, Stevenin J, Elliott DJ. (2005) Up-regulation of the ubiquitous alternative splicing factor Tra2beta causes inclusion of a germ cell-specific exon. Hum Mol Genet. 14(16):2289-22303.		Constructs of wt or mutated HBB [3043]_EX2 - HIPK3 [10114]_INT3 - HIPK3 [10114]_EX3bis - HIPK3 [10114]_INT3 - HBB [3043]_ EX3. Sequences deriving from HIPK3 [10114].	In vivo splicing in HEK293 cells.	Pulldown assay and western blot with HeLa NE
hnRNP H1	AUACCUUUUUGGGGAGGGGGCAGAGAGC	-5	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	16254078	Mercado PA, Ayala YM, Romano M, Buratti E, Baralle FE. (2005) Depletion of TDP 43 overrides the need for exonic and intronic splicing enhancers in the human apoA-II gene. Nucleic Acids Res. 33(18):6000-6010.		Construct of heterologous exons of alpha-globin, fibronectin and APOA2 [336] INT2 - EX3 - INT3	In vivo splicing in Hep3B	Pull-down assay in HeLa NE, western blot. UV cross-linking, immunoprecipitation in HeLa NE, siRNA.
hnRNP H1	AAGAA	-2	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H1	CAGGAC	-2	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H1	AGAGA	-2	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H1	AGAGG	-2	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H1	AGGAG	-2	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H1	AGGGC	-6	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H1	AGGGU	-6	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H1	AGGGG	-6	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H1	GGGGG	-6	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H1	CGGGGGGGGC	-6	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H1	AGGGGAGGGG	-8	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H1	AGGGAAGGGA	-8	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H1	AGGGAAGGGAAGGGAAGGGA	-8	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H1	AGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGA	-8	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H1	CGAGAGCGUCGGUAUUAAGCGGGGGAGAAUUAGAUAAAUG	-5	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H1	CAGAAGGGGAGGGGUUCCA	-3	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	17567613	Wang E, Dimova N, Cambi F. (2007) PLP/DM20 ratio is regulated by hnRNPH and F and a novel G-rich enhancer in oligodendrocytes. Nucleic Acids Res. 35(12):4164-4178.		Sequences deriving from PLP1 [5354]. Constructs of PLP1 [5354] INT3 - EX3A - E3B - INT4.	In vivo splicing in oligodendroglial precursors.	RNA-affinity precipitations of oligodendroglial precursor NE, mass spectroscopy, western blot. siRNA
hnRNP H1	AACAAGGGGUGGGGGAAAA	-3	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	17567613	Wang E, Dimova N, Cambi F. (2007) PLP/DM20 ratio is regulated by hnRNPH and F and a novel G-rich enhancer in oligodendrocytes. Nucleic Acids Res. 35(12):4164-4178.		Sequences deriving from PLP1 [5354]. Constructs of PLP1 [5354] INT3 - EX3A - E3B - INT4.	In vivo splicing in oligodendroglial precursors.	RNA-affinity precipitations of oligodendroglial precursor NE, mass spectroscopy, western blot. siRNA
hnRNP H1	GUAUCCUUCCCUGGCGGGGGUGGGAGAGCAGCAGGGCCAGGGGGGUGACACACC	-5	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	16308319	McNally LM, Yee L, McNally MT. (2006) Heterogeneous nuclear ribonucleoprotein H is required for optimal U11 small nuclear ribonucleoprotein binding to a retroviral RNA-processing control element: implications for U12-dependent RNA splicing. J Biol Chem. 281(5):2478-2488.		Sequences deriving from wt and mutated RSV NRS region, SCN4A [6329], NOP2 [4839]. Constructs of EX_[RSV NRS] - INT_[RSV NRS] - NOP2 [4839] INT - NOP2 [4839] EX. Constructs of SCN4A [6329] EX2 - INT2 - EX3. Constructs of NOP2 [4839] EX7 - INT7 - EX8.	In vivo splicing in HEK293	UV cross-linking, MALDI-TOF and western blot with HeLa NE
hnRNP H1	AUAUCCUGCCCAAGAUGGGAGAGGCGGGAGGGGUUAGGGAUGGGCGAGAUGGGGUGCUGU	-10	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	16308319	McNally LM, Yee L, McNally MT. (2006) Heterogeneous nuclear ribonucleoprotein H is required for optimal U11 small nuclear ribonucleoprotein binding to a retroviral RNA-processing control element: implications for U12-dependent RNA splicing. J Biol Chem. 281(5):2478-2488.		Sequences deriving from wt and mutated RSV NRS region, SCN4A [6329], NOP2 [4839]. Constructs of EX_[RSV NRS] - INT_[RSV NRS] - NOP2 [4839] INT - NOP2 [4839] EX. Constructs of SCN4A [6329] EX2 - INT2 - EX3. Constructs of NOP2 [4839] EX7 - INT7 - EX8.	In vivo splicing in HEK293	UV cross-linking, MALDI-TOF and western blot with HeLa NE
hnRNP H1	AUAUCCUGCCCAAGAUGUGAGAGGCGUGAGGUGUUAGGGAUGGGCGAGAUGGGGUGCUGU	-4	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	16308319	McNally LM, Yee L, McNally MT. (2006) Heterogeneous nuclear ribonucleoprotein H is required for optimal U11 small nuclear ribonucleoprotein binding to a retroviral RNA-processing control element: implications for U12-dependent RNA splicing. J Biol Chem. 281(5):2478-2488.		Sequences deriving from wt and mutated RSV NRS region, SCN4A [6329], NOP2 [4839]. Constructs of EX_[RSV NRS] - INT_[RSV NRS] - NOP2 [4839] INT - NOP2 [4839] EX. Constructs of SCN4A [6329] EX2 - INT2 - EX3. Constructs of NOP2 [4839] EX7 - INT7 - EX8.	In vivo splicing in HEK293	UV cross-linking, MALDI-TOF and western blot with HeLa NE
hnRNP H1	AUAUCCUGCCCAAGAUGGGAGAGGCGGGAGGGGUUAGUGAUGUGCGAGAUGGUGUGCUGU	-8	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	16308319	McNally LM, Yee L, McNally MT. (2006) Heterogeneous nuclear ribonucleoprotein H is required for optimal U11 small nuclear ribonucleoprotein binding to a retroviral RNA-processing control element: implications for U12-dependent RNA splicing. J Biol Chem. 281(5):2478-2488.		Sequences deriving from wt and mutated RSV NRS region, SCN4A [6329], NOP2 [4839]. Constructs of EX_[RSV NRS] - INT_[RSV NRS] - NOP2 [4839] INT - NOP2 [4839] EX. Constructs of SCN4A [6329] EX2 - INT2 - EX3. Constructs of NOP2 [4839] EX7 - INT7 - EX8.	In vivo splicing in HEK293	UV cross-linking, MALDI-TOF and western blot with HeLa NE
hnRNP H1	AUAUCCUGCCCAAGAUGUGAGAGGCGUGAGGUGUUAGUGAUGUGCGAGAUGGUGUGCUGU	-1	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	16308319	McNally LM, Yee L, McNally MT. (2006) Heterogeneous nuclear ribonucleoprotein H is required for optimal U11 small nuclear ribonucleoprotein binding to a retroviral RNA-processing control element: implications for U12-dependent RNA splicing. J Biol Chem. 281(5):2478-2488.		Sequences deriving from wt and mutated RSV NRS region, SCN4A [6329], NOP2 [4839]. Constructs of EX_[RSV NRS] - INT_[RSV NRS] - NOP2 [4839] INT - NOP2 [4839] EX. Constructs of SCN4A [6329] EX2 - INT2 - EX3. Constructs of NOP2 [4839] EX7 - INT7 - EX8.	In vivo splicing in HEK293	UV cross-linking, MALDI-TOF and western blot with HeLa NE
hnRNP H1	GGUUGGGAGAGGGAUUUC	-10	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	16308319	McNally LM, Yee L, McNally MT. (2006) Heterogeneous nuclear ribonucleoprotein H is required for optimal U11 small nuclear ribonucleoprotein binding to a retroviral RNA-processing control element: implications for U12-dependent RNA splicing. J Biol Chem. 281(5):2478-2488.		Sequences deriving from wt and mutated RSV NRS region, SCN4A [6329], NOP2 [4839]. Constructs of EX_[RSV NRS] - INT_[RSV NRS] - NOP2 [4839] INT - NOP2 [4839] EX. Constructs of SCN4A [6329] EX2 - INT2 - EX3. Constructs of NOP2 [4839] EX7 - INT7 - EX8.	In vivo splicing in HEK293	UV cross-linking, MALDI-TOF and western blot with HeLa NE
hnRNP H1	GGUUGUGAGAGUGAUUUC	-1	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	16308319	McNally LM, Yee L, McNally MT. (2006) Heterogeneous nuclear ribonucleoprotein H is required for optimal U11 small nuclear ribonucleoprotein binding to a retroviral RNA-processing control element: implications for U12-dependent RNA splicing. J Biol Chem. 281(5):2478-2488.		Sequences deriving from wt and mutated RSV NRS region, SCN4A [6329], NOP2 [4839]. Constructs of EX_[RSV NRS] - INT_[RSV NRS] - NOP2 [4839] INT - NOP2 [4839] EX. Constructs of SCN4A [6329] EX2 - INT2 - EX3. Constructs of NOP2 [4839] EX7 - INT7 - EX8.	In vivo splicing in HEK293	UV cross-linking, MALDI-TOF and western blot with HeLa NE
hnRNP H1	GGGGAAUAUACGUGCUUGGCGGGUAAUUCUAUUGGGA	-5	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	18573884	Mauger DM, Lin C, Garcia-Blanco MA. (2008) hnRNP H and hnRNP F complex with Fox2 to silence fibroblast growth factor receptor 2 exon IIIc. Mol Cell Biol. 28(17):5403-5419.		Constructs of FGFR2 [2263] EX7 - INT7 - EX8 - INT8 - EX9 - INT9 - EX10.	In vivo splicing in HEK293	Splicing assays with wt and mutant minigenes. siRNA.
hnRNP H1	GGGAAUGUGGG	-5	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	19506027	Millevoi S, Decorsiere A, Loulergue C, Iacovoni J, Bernat S, Antoniou M, Vagner S. (2009) A physical and functional link between splicing factors promotes pre-mRNA 3' end processing. Nucleic Acids Res. 37(14):4672-4683.		Sequences deriving from HBB [3043]		UV cross-linking, immunoprecipitation with HeLa NE and recombinant protein
hnRNP H1	GGGGU	-5	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	12732620	Pagani F, Buratti E, Stuani C, Baralle FE. (2003) Missense, nonsense, and neutral mutations define juxtaposed regulatory elements of splicing in cystic fibrosis transmembrane regulator exon 9. J Biol Chem. 278(29):26580-26588.		Construct of CFTR [1080] EX8 - INT8 - EX9 - INT9 - EX10	In vivo splicing in Hep3B cells of WT and mutant CFTR constructs.	UV cross-linking, pull-down assay, immunoblotting in HeLa nuclear extracts with wt and mutated RNAs.
hnRNP H1	UGGGA	-5	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	12732620	Pagani F, Buratti E, Stuani C, Baralle FE. (2003) Missense, nonsense, and neutral mutations define juxtaposed regulatory elements of splicing in cystic fibrosis transmembrane regulator exon 9. J Biol Chem. 278(29):26580-26588.		Construct of CFTR [1080] EX8 - INT8 - EX9 - INT9 - EX10	In vivo splicing in Hep3B cells of WT and mutant CFTR constructs.	UV cross-linking, pull-down assay, immunoblotting in HeLa nuclear extracts with wt and mutated RNAs.
hnRNP H1	UGGGU	-5	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	20100605	Russo A, Siciliano G, Catillo M, Giangrande C, Amoresano A, Pucci P, Pietropaolo C, Russo G. (2010) hnRNP H1 and intronic G runs in the splicing control of the human rpL3 gene. Biochim Biophys Acta. 1799(5-6):419-428.		Construct of RPL3 [6122] EX3 - INT3 - EX4	In vivo splicing in HeLa	GST pull-down, mass spectrometry, Immunoprecipitation, western blotting, RNA pull-down assay, REMSA, RNA interference in HeLa and Calu6
hnRNP H1	CUGAGGCUGGGGGCUGCUCUCUGCAUGUGCUUCCU	-5	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	11571276	Caputi M, Zahler AM. (2001) Determination of the RNA Binding Specificity of the Heterogeneous Nuclear Ribonucleoprotein (hnRNP) H/H'/F/2H9 Family. J Biol Chem. 276(47): 43850-43859.		Synthesized oligos, constructs of Rev-dependent export (p17gag INS), beta-tropomyosin TPM2 [7169], c-src [20779].		RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography.
hnRNP H1	CUGAGGCUGGGGGCUGGAAUUCCCAUGUGCUUCCU	-5	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	11571276	Caputi M, Zahler AM. (2001) Determination of the RNA Binding Specificity of the Heterogeneous Nuclear Ribonucleoprotein (hnRNP) H/H'/F/2H9 Family. J Biol Chem. 276(47): 43850-43859.		Synthesized oligos, constructs of Rev-dependent export (p17gag INS), beta-tropomyosin TPM2 [7169], c-src [20779].		RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography.
hnRNP H1	UAUGACCCGGACUCCCGGUG	-2	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	11571276	Caputi M, Zahler AM. (2001) Determination of the RNA Binding Specificity of the Heterogeneous Nuclear Ribonucleoprotein (hnRNP) H/H'/F/2H9 Family. J Biol Chem. 276(47): 43850-43859.		Synthesized oligos, constructs of Rev-dependent export (p17gag INS), beta-tropomyosin TPM2 [7169], c-src [20779].		RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography.
hnRNP H1	UAUGAUAGGCACUUAGGCUG	-2	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	11571276	Caputi M, Zahler AM. (2001) Determination of the RNA Binding Specificity of the Heterogeneous Nuclear Ribonucleoprotein (hnRNP) H/H'/F/2H9 Family. J Biol Chem. 276(47): 43850-43859.		Synthesized oligos, constructs of Rev-dependent export (p17gag INS), beta-tropomyosin TPM2 [7169], c-src [20779].		RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography.
hnRNP H1	CUGGGGGCUG	-5	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	11571276	Caputi M, Zahler AM. (2001) Determination of the RNA Binding Specificity of the Heterogeneous Nuclear Ribonucleoprotein (hnRNP) H/H'/F/2H9 Family. J Biol Chem. 276(47): 43850-43859.		Synthesized oligos, constructs of Rev-dependent export (p17gag INS), beta-tropomyosin TPM2 [7169], c-src [20779].		RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography.
hnRNP H1	GGGGC	-2	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	11571276	Caputi M, Zahler AM. (2001) Determination of the RNA Binding Specificity of the Heterogeneous Nuclear Ribonucleoprotein (hnRNP) H/H'/F/2H9 Family. J Biol Chem. 276(47): 43850-43859.		Synthesized oligos, constructs of Rev-dependent export (p17gag INS), beta-tropomyosin TPM2 [7169], c-src [20779].		RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography.
hnRNP H1	AAGGCGAA	1	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	15828859	Han K, Yeo G, An P, Burge CB, Grabowski PJ. (2005) A combinatorial code for splicing silencing: UAGG and GGGG motifs. PLoS Biol. 3(5):e158.	In this context, hnRNP A1 was shown to mediate silencing while hnRNP H1, H2, F enhance exon inclusion.	Synthesized sequences based on GRIN1 [2902] EX19.		Mutational analysis, UV crosslinking, immunoprecipitation in HeLa nuclear extracts.
hnRNP H1	CGAGAGCGUCGGUAUUAAGCGGAUCCGAAUUAGAUAAAUG	-5	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H1	GGGGA	-5	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	11571276	Caputi M, Zahler AM. (2001) Determination of the RNA Binding Specificity of the Heterogeneous Nuclear Ribonucleoprotein (hnRNP) H/H'/F/2H9 Family. J Biol Chem. 276(47): 43850-43859.		Synthesized oligos, constructs of Rev-dependent export (p17gag INS), beta-tropomyosin TPM2 [7169], c-src [20779].		RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography.
hnRNP H1	GGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCC	-5	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	24290757	Lee YB, Chen HJ, Peres JN, Gomez-Deza J, Attig J, Stalekar M, Troakes C, Nishimura AL, Scotter EL, Vance C, Adachi Y, Sardone V, Miller JW, Smith BN, Gallo JM, Ule J, Hirth F, Rogelj B, Houart C, Shaw CE. (2013) Hexanucleotide repeats in ALS/FTD form length-dependent RNA foci, sequester RNA binding proteins, and are neurotoxic. Cell Rep. 5(5):1178-1186.		Synthetic sequences.		RNA pull-down assay using SH-SY5Y cell extract.
hnRNP H1	AAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACC	-2	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP H1	UGGGACUGGGACUGGGACUG	-5	Gene Name and Synonymous: HNRNPH1, heterogeneous nuclear ribonucleoprotein H1 (H), HNRPH, HNRPH1, hnRNPH, DKFZp686A15170.	16000324	Venables JP, Bourgeois CF, Dalgliesh C, Kister L, Stevenin J, Elliott DJ. (2005) Up-regulation of the ubiquitous alternative splicing factor Tra2beta causes inclusion of a germ cell-specific exon. Hum Mol Genet. 14(16):2289-22303.		Constructs of wt or mutated HBB [3043]_EX2 - HIPK3 [10114]_INT3 - HIPK3 [10114]_EX3bis - HIPK3 [10114]_INT3 - HBB [3043]_ EX3. Sequences deriving from HIPK3 [10114].	In vivo splicing in HEK293 cells.	Pulldown assay and western blot with HeLa NE
hnRNP H2	CGGGA	-5	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	11847131	Caputi M, Zahler AM. (2002) SR proteins and hnRNP H regulate the splicing of the HIV-1 tev-specific exon 6D. EMBO J. 21(4): 845-855.		Construct of HIV-1 env [155971] EX_6D and part of flanking introns.	In vitro splicing with HeLa nuclear extracts	RNA affinity chromatography assay and immunoblot.
hnRNP H2	AUUGGGUGU	-8	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	11526107	Jacquenet S, Mereau A, Bilodeau PS, Damier L, Stoltzfus CM, Branlant C. (2001) A second exon splicing silencer within human immunodeficiency virus type 1 tat exon 2 represses splicing of Tat mRNA and binds protein hnRNP H. J Biol Chem. 276(44): 40464-75.		Constructs of HIV-1 Tat [155871] EX2.	In vitro splicing with HeLa nuclear extracts. In vivo splicing in HeLa.	EMSA, UV crosslink, immunoprecipitation and immunoblot.
hnRNP H2	GGGGGGG	-7	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	7512260	Matunis MJ, Xing J, Dreyfuss G. (1994) The hnRNP F protein: unique primary structure, nucleic acid-binding properties, and subcellular localization. Nucleic Acids Res. 22(6): 1059-67.		homopolymers		Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract.
hnRNP H2	GGGGGCUG	-5	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	11003644	Markovtsov V, Nikolic JM, Goldman JA, Turck CW, Chou MY, Black DL. (2000) Cooperative assembly of an hnRNP complex induced by a tissue-specific homolog of polypyrimidine tract binding protein. Mol Cell Biol. 20(20):7463-7479.		Sequences from position 37 to 70 downstream murine c-src [20779] EX_N1 for EMSA and UV crosslink. Synthesized 37-mer RNA for RNA affinity purification. Construct of EX3 - INT - EX4 murine c-src for in vitro splicing.	In vitro splicing with WERI-1 extracts.	RNA affinity purification with HeLa or WERI-1 nuclear extracts. UV crosslink in HeLa and in WERI-1 extracts. EMSA with purified protein. Immunoprecipitation and Western blot.
hnRNP H2	UGUGGG	-5	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	10072387	Chen CD, Kobayashi R, Helfman DM. (1999) Binding of hnRNP H to an exonic splicing silencer is involved in the regulation of alternative splicing of the rat beta-tropomyosin gene. Genes Dev. 13(5):593-606.		Construct of rat beta-tropomyosin Tpm2 [500450] EX5-INT5-EX7	In vitro splicing in HeLa nuclear extracts.	UV crosslink, competition assays, immunoblot, immunodepletion in HeLa nuclear extracts.
hnRNP H2	GGAGGA	-5	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	12612063	Rooke N, Markovtsov V, Cagavi E, Black DL. (2003) Roles for SR proteins and hnRNP A1 in the regulation of c-src exon N1. Mol Cell Biol. 23(6):1874-1884.		Construct of c-src [20779] EX_N1.	In vitro splicing with Weri-1, Weri-1 S100 and HeLa nuclear extracts.	UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts.
hnRNP H2	CGAAUCGACAAAGGGGAGGAAGUGGGAGAAA	-5	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	10934202	Fogel BL, McNally MT. (2000) A cellular protein, hnRNP H, binds to the negative regulator of splicing element from Rous sarcoma virus. J Biol Chem. 275(41):32371-32378.		Sequence and variants of NRS5' region Rous sarcoma virus.		UV crosslink in HeLa nuclear extracts. RNA affinity selection with HeLa extracts. Immunoprecipitation, EMSA supershift.
hnRNP H2	AAGGGGAA	5	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	15828859	Han K, Yeo G, An P, Burge CB, Grabowski PJ. (2005) A combinatorial code for splicing silencing: UAGG and GGGG motifs. PLoS Biol. 3(5):e158.	In this context, hnRNP A1 was shown to mediate silencing while hnRNP H1, H2, F enhance exon inclusion.	Synthesized sequences based on GRIN1 [2902] EX19.		Mutational analysis, UV crosslinking, immunoprecipitation in HeLa nuclear extracts.
hnRNP H2	AGGGA	-8	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	19404736	Millevoi S, Bernat S, Telly D, Fouque F, Gladieff L, Favre G, Vagner S, Toulas C. (2009) The c.5242C>A BRCA1 missense variant induces exon skipping by increasing splicing repressors binding. Breast Cancer Res Treat. 120(2):391-399.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19. WT or mutated exon 18 RNA substrates.	In vitro splicing in HeLa nuclear extract	Mutational analysis, RNA affinity chromatography, UV cross-linking, immunoprecipitation with HeLa nuclear extract.
hnRNP H2	CGGGC	-6	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H2	AUCGGGCGU	-5	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	11526107	Jacquenet S, Mereau A, Bilodeau PS, Damier L, Stoltzfus CM, Branlant C. (2001) A second exon splicing silencer within human immunodeficiency virus type 1 tat exon 2 represses splicing of Tat mRNA and binds protein hnRNP H. J Biol Chem. 276(44): 40464-75.		Constructs of HIV-1 Tat [155871] EX2.	In vitro splicing with HeLa nuclear extracts. In vivo splicing in HeLa.	EMSA, UV crosslink, immunoprecipitation and immunoblot.
hnRNP H2	AAGGUG	-5	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	12612063	Rooke N, Markovtsov V, Cagavi E, Black DL. (2003) Roles for SR proteins and hnRNP A1 in the regulation of c-src exon N1. Mol Cell Biol. 23(6):1874-1884.		Construct of c-src [20779] EX_N1.	In vitro splicing with Weri-1, Weri-1 S100 and HeLa nuclear extracts.	UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts.
hnRNP H2	UGGGC	-5	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H2	UGGGG	-5	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	12732620	Pagani F, Buratti E, Stuani C, Baralle FE. (2003) Missense, nonsense, and neutral mutations define juxtaposed regulatory elements of splicing in cystic fibrosis transmembrane regulator exon 9. J Biol Chem. 278(29):26580-26588.		Construct of CFTR [1080] EX8 - INT8 - EX9 - INT9 - EX10	In vivo splicing in Hep3B cells of WT and mutant CFTR constructs.	UV cross-linking, pull-down assay, immunoblotting in HeLa nuclear extracts with wt and mutated RNAs.
hnRNP H2	GGGGGAGGUGUGGG	-5	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP H2	AGGGGAGGUGUGGG	-5	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP H2	GAGGGAGGUGUGGG	-6	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP H2	GGAGGAGGUGUGGG	-2	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP H2	GGGAGAGGUGUGGG	-4	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP H2	GGGGAAGGUGUGGG	-2	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP H2	GGGGGAAGUGUGGG	-3	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP H2	GGGGGAGAUGUGGG	-4	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP H2	GGGGGAGGUAUGGG	-6	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP H2	GGGGGAGGUGUAGG	-4	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP H2	GGGGGAGGUGUGAG	-10	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP H2	GGGGGAGGUGUGGA	-10	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP H2	GGGGGAGGUGUGAA	-4	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP H2	GGGGGAGGUGUAAG	-2	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP H2	GGGGGAAAUGUGGG	-7	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP H2	GGGAAAGGUGUGGG	-1	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP H2	GGAAGAGGUGUGGG	-1	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP H2	GAAGGAGGUGUGGG	-1	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP H2	AAGGGAGGUGUGGG	-2	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP H2	GGAGAAGGUGUGGG	-1	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	16171461	Alkan SA, Martincic K, Milcarek C. (2006) The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393(Pt 1):361-371.		SVL (SV40 late) pre-mRNA and mutants		UV cross-linking, EMSA, filter binding assays using recombinant protein
hnRNP H2	GAUCACUGGGGUGGAUCAUCCAGGUGGGGCUUUU	-5	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	16396608	Martinez-Contreras R, Fisette JF, Nasim FU, Madden R, Cordeau M, Chabot B. (2006) Intronic binding sites for hnRNP A/B and hnRNP F/H proteins stimulate pre-mRNA splicing. PLoS Biol. 4(2):e21.		Constructs of hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - EXL2_[Adenovirus] and hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - BCL2L1 [598] EX3	In vitro splicing with HeLa NE	Immunoprecipitation, Gel shift and RNase H protection assays
hnRNP H2	GGGUCGAGGGG	-5	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	16396608	Martinez-Contreras R, Fisette JF, Nasim FU, Madden R, Cordeau M, Chabot B. (2006) Intronic binding sites for hnRNP A/B and hnRNP F/H proteins stimulate pre-mRNA splicing. PLoS Biol. 4(2):e21.		Constructs of hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - EXL2_[Adenovirus] and hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - BCL2L1 [598] EX3	In vitro splicing with HeLa NE	Immunoprecipitation, Gel shift and RNase H protection assays
hnRNP H2	GAUCACUGGGGUGGAUCAU	-1	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	19926721	Fisette JF, Toutant J, Dugre-Brisson S, Desgroseillers L, Chabot B. (2010) hnRNP A1 and hnRNP H can collaborate to modulate 5' splice site selection. RNA. 16(1):228-238.		Constructs of hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - EXL2_[Adenovirus] and hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - BCL2L1 [598] EX3	In vitro splicing with HeLa NE	Filter binding assay, EMSA using recombinant protein
hnRNP H2	GAUCACUGUGGUGGAUCAUCCAGGUGUGGCUUUU	-1	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	19926721	Fisette JF, Toutant J, Dugre-Brisson S, Desgroseillers L, Chabot B. (2010) hnRNP A1 and hnRNP H can collaborate to modulate 5' splice site selection. RNA. 16(1):228-238.		Constructs of hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - EXL2_[Adenovirus] and hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - BCL2L1 [598] EX3	In vitro splicing with HeLa NE	Filter binding assay, EMSA using recombinant protein
hnRNP H2	GAUCACUGUGGUGGAUCAUCCAGGUGGGGCUUUU	-1	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	19926721	Fisette JF, Toutant J, Dugre-Brisson S, Desgroseillers L, Chabot B. (2010) hnRNP A1 and hnRNP H can collaborate to modulate 5' splice site selection. RNA. 16(1):228-238.		Constructs of hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - EXL2_[Adenovirus] and hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - BCL2L1 [598] EX3	In vitro splicing with HeLa NE	Filter binding assay, EMSA using recombinant protein
hnRNP H2	CCAUGGUUUGGGAGUGGGAAGGUGGGGAG	-5	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	19926721	Fisette JF, Toutant J, Dugre-Brisson S, Desgroseillers L, Chabot B. (2010) hnRNP A1 and hnRNP H can collaborate to modulate 5' splice site selection. RNA. 16(1):228-238.		Constructs of hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - EXL2_[Adenovirus] and hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - BCL2L1 [598] EX3	In vitro splicing with HeLa NE	Filter binding assay, EMSA using recombinant protein
hnRNP H2	CCAUGGUUUGGGGGCAGUAGUUGG	-8	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	19926721	Fisette JF, Toutant J, Dugre-Brisson S, Desgroseillers L, Chabot B. (2010) hnRNP A1 and hnRNP H can collaborate to modulate 5' splice site selection. RNA. 16(1):228-238.		Constructs of hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - EXL2_[Adenovirus] and hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - BCL2L1 [598] EX3	In vitro splicing with HeLa NE	Filter binding assay, EMSA using recombinant protein
hnRNP H2	UGGGGU	-5	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	12228232	Romano M, Marcucci R, Buratti E, Ayala YM, Sebastio G, Baralle FE. (2002) Regulation of 3' splice site selection in the 844ins68 polymorphism of the cystathionine beta-synthase gene. J Biol Chem. 277(46):43821-43829.		Construct of CBS [875] EX5 - INT5 - EX6 - INT6 - EX7 - INT7 - EX8 - INT8 - EX9	In vivo splicing in HeLa	Mutation assay, REMSA, UV cross-linking in HeLa nuclear extract, Immunoblotting
hnRNP H2	GGCGGCCAGAGGGUGUGCGGAGCUGGUGGGGAGGAGCCUGGAGAGAAGGGGCAGAGCUGGGGGCUGAGGGAGACCCCCCC	-10	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	11421362	Hastings ML, Wilson CM, Munroe SH. (2001) A purine-rich intronic element enhances alternative splicing of thyroid hormone receptor mRNA. RNA. 7(6):859-874.		Constructs of THRA [7067] EX7 - INT7 - EX8 - INT8 - EX9 - INT9 - EX10	In vitro splicing with HeLa NE	UV cross-linking, northwestern blotting, immunoprecipitation with HeLa NE and recombinant proteins.
hnRNP H2	AGGGUUGAGGGGAGCAGGGU	-7	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	15208309	Expert-Bezancon A, Sureau A, Durosay P, Salesse R, Groeneveld H, Lecaer JP, Marie J. (2004) hnRNP A1 and the SR proteins ASF/SF2 and SC35 have antagonistic functions in splicing of beta-tropomyosin exon 6B. J Biol Chem. 279(37):38249-38259.		Sequences deriving from TPM3 [396430] and synthesized sequences. Construct of chicken TPM3 [396430] EX6B - INT7 - EX7.	In vitro splicing in HeLa NE	EMSA with recombinant protein. RNA affinity chromatography and immunoprecipitation in HeLa NE
hnRNP H2	CGGGUUGACGGGAGCACGGU	-5	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	15208309	Expert-Bezancon A, Sureau A, Durosay P, Salesse R, Groeneveld H, Lecaer JP, Marie J. (2004) hnRNP A1 and the SR proteins ASF/SF2 and SC35 have antagonistic functions in splicing of beta-tropomyosin exon 6B. J Biol Chem. 279(37):38249-38259.		Sequences deriving from TPM3 [396430] and synthesized sequences. Construct of chicken TPM3 [396430] EX6B - INT7 - EX7.	In vitro splicing in HeLa NE	EMSA with recombinant protein. RNA affinity chromatography and immunoprecipitation in HeLa NE
hnRNP H2	AGUGUUGAGUGGAGCAGUGGU	-5	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	15208309	Expert-Bezancon A, Sureau A, Durosay P, Salesse R, Groeneveld H, Lecaer JP, Marie J. (2004) hnRNP A1 and the SR proteins ASF/SF2 and SC35 have antagonistic functions in splicing of beta-tropomyosin exon 6B. J Biol Chem. 279(37):38249-38259.		Sequences deriving from TPM3 [396430] and synthesized sequences. Construct of chicken TPM3 [396430] EX6B - INT7 - EX7.	In vitro splicing in HeLa NE	EMSA with recombinant protein. RNA affinity chromatography and immunoprecipitation in HeLa NE
hnRNP H2	GGGAGGAAGAAAUAGAAGAUGCAGAAGAGG	-5	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	16000324	Venables JP, Bourgeois CF, Dalgliesh C, Kister L, Stevenin J, Elliott DJ. (2005) Up-regulation of the ubiquitous alternative splicing factor Tra2beta causes inclusion of a germ cell-specific exon. Hum Mol Genet. 14(16):2289-22303.		Constructs of wt or mutated HBB [3043]_EX2 - HIPK3 [10114]_INT3 - HIPK3 [10114]_EX3bis - HIPK3 [10114]_INT3 - HBB [3043]_ EX3. Sequences deriving from HIPK3 [10114].	In vivo splicing in HEK293 cells.	Pulldown assay and western blot with HeLa NE
hnRNP H2	AAGAA	-2	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H2	CAGGAC	-2	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H2	AGAGA	-2	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H2	AGAGG	-2	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H2	AGGAG	-2	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H2	AGGGC	-6	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H2	AGGGU	-6	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H2	AGGGG	-6	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H2	GGGGG	-6	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H2	CGGGGGGGGC	-6	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H2	AGGGGAGGGG	-8	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H2	AGGGAAGGGA	-8	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H2	AGGGAAGGGAAGGGAAGGGA	-8	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H2	AGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGA	-8	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H2	CGAGAGCGUCGGUAUUAAGCGGGGGAGAAUUAGAUAAAUG	-5	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H2	GUAUCCUUCCCUGGCGGGGGUGGGAGAGCAGCAGGGCCAGGGGGGUGACACACC	-5	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	16308319	McNally LM, Yee L, McNally MT. (2006) Heterogeneous nuclear ribonucleoprotein H is required for optimal U11 small nuclear ribonucleoprotein binding to a retroviral RNA-processing control element: implications for U12-dependent RNA splicing. J Biol Chem. 281(5):2478-2488.		Sequences deriving from wt and mutated RSV NRS region, SCN4A [6329], NOP2 [4839]. Constructs of EX_[RSV NRS] - INT_[RSV NRS] - NOP2 [4839] INT - NOP2 [4839] EX. Constructs of SCN4A [6329] EX2 - INT2 - EX3. Constructs of NOP2 [4839] EX7 - INT7 - EX8.	In vivo splicing in HEK293	UV cross-linking, MALDI-TOF and western blot with HeLa NE
hnRNP H2	AUAUCCUGCCCAAGAUGGGAGAGGCGGGAGGGGUUAGGGAUGGGCGAGAUGGGGUGCUGU	-10	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	16308319	McNally LM, Yee L, McNally MT. (2006) Heterogeneous nuclear ribonucleoprotein H is required for optimal U11 small nuclear ribonucleoprotein binding to a retroviral RNA-processing control element: implications for U12-dependent RNA splicing. J Biol Chem. 281(5):2478-2488.		Sequences deriving from wt and mutated RSV NRS region, SCN4A [6329], NOP2 [4839]. Constructs of EX_[RSV NRS] - INT_[RSV NRS] - NOP2 [4839] INT - NOP2 [4839] EX. Constructs of SCN4A [6329] EX2 - INT2 - EX3. Constructs of NOP2 [4839] EX7 - INT7 - EX8.	In vivo splicing in HEK293	UV cross-linking, MALDI-TOF and western blot with HeLa NE
hnRNP H2	AUAUCCUGCCCAAGAUGUGAGAGGCGUGAGGUGUUAGGGAUGGGCGAGAUGGGGUGCUGU	-4	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	16308319	McNally LM, Yee L, McNally MT. (2006) Heterogeneous nuclear ribonucleoprotein H is required for optimal U11 small nuclear ribonucleoprotein binding to a retroviral RNA-processing control element: implications for U12-dependent RNA splicing. J Biol Chem. 281(5):2478-2488.		Sequences deriving from wt and mutated RSV NRS region, SCN4A [6329], NOP2 [4839]. Constructs of EX_[RSV NRS] - INT_[RSV NRS] - NOP2 [4839] INT - NOP2 [4839] EX. Constructs of SCN4A [6329] EX2 - INT2 - EX3. Constructs of NOP2 [4839] EX7 - INT7 - EX8.	In vivo splicing in HEK293	UV cross-linking, MALDI-TOF and western blot with HeLa NE
hnRNP H2	AUAUCCUGCCCAAGAUGGGAGAGGCGGGAGGGGUUAGUGAUGUGCGAGAUGGUGUGCUGU	-8	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	16308319	McNally LM, Yee L, McNally MT. (2006) Heterogeneous nuclear ribonucleoprotein H is required for optimal U11 small nuclear ribonucleoprotein binding to a retroviral RNA-processing control element: implications for U12-dependent RNA splicing. J Biol Chem. 281(5):2478-2488.		Sequences deriving from wt and mutated RSV NRS region, SCN4A [6329], NOP2 [4839]. Constructs of EX_[RSV NRS] - INT_[RSV NRS] - NOP2 [4839] INT - NOP2 [4839] EX. Constructs of SCN4A [6329] EX2 - INT2 - EX3. Constructs of NOP2 [4839] EX7 - INT7 - EX8.	In vivo splicing in HEK293	UV cross-linking, MALDI-TOF and western blot with HeLa NE
hnRNP H2	AUAUCCUGCCCAAGAUGUGAGAGGCGUGAGGUGUUAGUGAUGUGCGAGAUGGUGUGCUGU	-1	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	16308319	McNally LM, Yee L, McNally MT. (2006) Heterogeneous nuclear ribonucleoprotein H is required for optimal U11 small nuclear ribonucleoprotein binding to a retroviral RNA-processing control element: implications for U12-dependent RNA splicing. J Biol Chem. 281(5):2478-2488.		Sequences deriving from wt and mutated RSV NRS region, SCN4A [6329], NOP2 [4839]. Constructs of EX_[RSV NRS] - INT_[RSV NRS] - NOP2 [4839] INT - NOP2 [4839] EX. Constructs of SCN4A [6329] EX2 - INT2 - EX3. Constructs of NOP2 [4839] EX7 - INT7 - EX8.	In vivo splicing in HEK293	UV cross-linking, MALDI-TOF and western blot with HeLa NE
hnRNP H2	GGUUGGGAGAGGGAUUUC	-10	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	16308319	McNally LM, Yee L, McNally MT. (2006) Heterogeneous nuclear ribonucleoprotein H is required for optimal U11 small nuclear ribonucleoprotein binding to a retroviral RNA-processing control element: implications for U12-dependent RNA splicing. J Biol Chem. 281(5):2478-2488.		Sequences deriving from wt and mutated RSV NRS region, SCN4A [6329], NOP2 [4839]. Constructs of EX_[RSV NRS] - INT_[RSV NRS] - NOP2 [4839] INT - NOP2 [4839] EX. Constructs of SCN4A [6329] EX2 - INT2 - EX3. Constructs of NOP2 [4839] EX7 - INT7 - EX8.	In vivo splicing in HEK293	UV cross-linking, MALDI-TOF and western blot with HeLa NE
hnRNP H2	GGUUGUGAGAGUGAUUUC	-1	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	16308319	McNally LM, Yee L, McNally MT. (2006) Heterogeneous nuclear ribonucleoprotein H is required for optimal U11 small nuclear ribonucleoprotein binding to a retroviral RNA-processing control element: implications for U12-dependent RNA splicing. J Biol Chem. 281(5):2478-2488.		Sequences deriving from wt and mutated RSV NRS region, SCN4A [6329], NOP2 [4839]. Constructs of EX_[RSV NRS] - INT_[RSV NRS] - NOP2 [4839] INT - NOP2 [4839] EX. Constructs of SCN4A [6329] EX2 - INT2 - EX3. Constructs of NOP2 [4839] EX7 - INT7 - EX8.	In vivo splicing in HEK293	UV cross-linking, MALDI-TOF and western blot with HeLa NE
hnRNP H2	GGGAAUGUGGG	-5	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	19506027	Millevoi S, Decorsiere A, Loulergue C, Iacovoni J, Bernat S, Antoniou M, Vagner S. (2009) A physical and functional link between splicing factors promotes pre-mRNA 3' end processing. Nucleic Acids Res. 37(14):4672-4683.		Sequences deriving from HBB [3043]		UV cross-linking, immunoprecipitation with HeLa NE and recombinant protein
hnRNP H2	GGGGU	-5	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	12732620	Pagani F, Buratti E, Stuani C, Baralle FE. (2003) Missense, nonsense, and neutral mutations define juxtaposed regulatory elements of splicing in cystic fibrosis transmembrane regulator exon 9. J Biol Chem. 278(29):26580-26588.		Construct of CFTR [1080] EX8 - INT8 - EX9 - INT9 - EX10	In vivo splicing in Hep3B cells of WT and mutant CFTR constructs.	UV cross-linking, pull-down assay, immunoblotting in HeLa nuclear extracts with wt and mutated RNAs.
hnRNP H2	UGGGA	-5	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	12732620	Pagani F, Buratti E, Stuani C, Baralle FE. (2003) Missense, nonsense, and neutral mutations define juxtaposed regulatory elements of splicing in cystic fibrosis transmembrane regulator exon 9. J Biol Chem. 278(29):26580-26588.		Construct of CFTR [1080] EX8 - INT8 - EX9 - INT9 - EX10	In vivo splicing in Hep3B cells of WT and mutant CFTR constructs.	UV cross-linking, pull-down assay, immunoblotting in HeLa nuclear extracts with wt and mutated RNAs.
hnRNP H2	CUGAGGCUGGGGGCUGCUCUCUGCAUGUGCUUCCU	-5	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	11571276	Caputi M, Zahler AM. (2001) Determination of the RNA Binding Specificity of the Heterogeneous Nuclear Ribonucleoprotein (hnRNP) H/H'/F/2H9 Family. J Biol Chem. 276(47): 43850-43859.		Synthesized oligos, constructs of Rev-dependent export (p17gag INS), beta-tropomyosin TPM2 [7169], c-src [20779].		RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography.
hnRNP H2	CUGAGGCUGGGGGCUGGAAUUCCCAUGUGCUUCCU	-5	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	11571276	Caputi M, Zahler AM. (2001) Determination of the RNA Binding Specificity of the Heterogeneous Nuclear Ribonucleoprotein (hnRNP) H/H'/F/2H9 Family. J Biol Chem. 276(47): 43850-43859.		Synthesized oligos, constructs of Rev-dependent export (p17gag INS), beta-tropomyosin TPM2 [7169], c-src [20779].		RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography.
hnRNP H2	UAUGACCCGGACUCCCGGUG	-2	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	11571276	Caputi M, Zahler AM. (2001) Determination of the RNA Binding Specificity of the Heterogeneous Nuclear Ribonucleoprotein (hnRNP) H/H'/F/2H9 Family. J Biol Chem. 276(47): 43850-43859.		Synthesized oligos, constructs of Rev-dependent export (p17gag INS), beta-tropomyosin TPM2 [7169], c-src [20779].		RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography.
hnRNP H2	UAUGAUAGGCACUUAGGCUG	-2	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	11571276	Caputi M, Zahler AM. (2001) Determination of the RNA Binding Specificity of the Heterogeneous Nuclear Ribonucleoprotein (hnRNP) H/H'/F/2H9 Family. J Biol Chem. 276(47): 43850-43859.		Synthesized oligos, constructs of Rev-dependent export (p17gag INS), beta-tropomyosin TPM2 [7169], c-src [20779].		RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography.
hnRNP H2	CUGGGGGCUG	-5	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	11571276	Caputi M, Zahler AM. (2001) Determination of the RNA Binding Specificity of the Heterogeneous Nuclear Ribonucleoprotein (hnRNP) H/H'/F/2H9 Family. J Biol Chem. 276(47): 43850-43859.		Synthesized oligos, constructs of Rev-dependent export (p17gag INS), beta-tropomyosin TPM2 [7169], c-src [20779].		RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography.
hnRNP H2	GGGGC	-2	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	11571276	Caputi M, Zahler AM. (2001) Determination of the RNA Binding Specificity of the Heterogeneous Nuclear Ribonucleoprotein (hnRNP) H/H'/F/2H9 Family. J Biol Chem. 276(47): 43850-43859.		Synthesized oligos, constructs of Rev-dependent export (p17gag INS), beta-tropomyosin TPM2 [7169], c-src [20779].		RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography.
hnRNP H2	AAGGCGAA	1	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	15828859	Han K, Yeo G, An P, Burge CB, Grabowski PJ. (2005) A combinatorial code for splicing silencing: UAGG and GGGG motifs. PLoS Biol. 3(5):e158.	In this context, hnRNP A1 was shown to mediate silencing while hnRNP H1, H2, F enhance exon inclusion.	Synthesized sequences based on GRIN1 [2902] EX19.		Mutational analysis, UV crosslinking, immunoprecipitation in HeLa nuclear extracts.
hnRNP H2	UGGGU	-5	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	18806275	Masuda A, Shen XM, Ito M, Matsuura T, Engel AG, Ohno K. (2008) hnRNP H enhances skipping of a nonfunctional exon P3A in CHRNA1 and a mutation disrupting its binding causes congenital myasthenic syndrome. Hum Mol Genet. 17(24):4022-4035.		Construct of CHRNA1 [1134] EX2-INT2-EX3-INT-EX_P3A-INT-EX4	In vivo splicing assay in HeLa	Western blotting using HEK293T nuclear extract, immunodepletion, surface plasmon resonance
hnRNP H2	CGAGAGCGUCGGUAUUAAGCGGAUCCGAAUUAGAUAAAUG	-5	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H2	CAGAAGGGGAGGGGUUCCA	-3	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	17567613	Wang E, Dimova N, Cambi F. (2007) PLP/DM20 ratio is regulated by hnRNPH and F and a novel G-rich enhancer in oligodendrocytes. Nucleic Acids Res. 35(12):4164-4178.		Sequences deriving from PLP1 [5354]. Constructs of PLP1 [5354] INT3 - EX3A - E3B - INT4.	In vivo splicing in oligodendroglial precursors.	RNA-affinity precipitations of oligodendroglial precursor NE, mass spectroscopy, western blot. siRNA
hnRNP H2	AACAAGGGGUGGGGGAAAA	-3	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	17567613	Wang E, Dimova N, Cambi F. (2007) PLP/DM20 ratio is regulated by hnRNPH and F and a novel G-rich enhancer in oligodendrocytes. Nucleic Acids Res. 35(12):4164-4178.		Sequences deriving from PLP1 [5354]. Constructs of PLP1 [5354] INT3 - EX3A - E3B - INT4.	In vivo splicing in oligodendroglial precursors.	RNA-affinity precipitations of oligodendroglial precursor NE, mass spectroscopy, western blot. siRNA
hnRNP H2	GGGGA	-5	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	11571276	Caputi M, Zahler AM. (2001) Determination of the RNA Binding Specificity of the Heterogeneous Nuclear Ribonucleoprotein (hnRNP) H/H'/F/2H9 Family. J Biol Chem. 276(47): 43850-43859.		Synthesized oligos, constructs of Rev-dependent export (p17gag INS), beta-tropomyosin TPM2 [7169], c-src [20779].		RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography.
hnRNP H2	GGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCC	-5	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	24290757	Lee YB, Chen HJ, Peres JN, Gomez-Deza J, Attig J, Stalekar M, Troakes C, Nishimura AL, Scotter EL, Vance C, Adachi Y, Sardone V, Miller JW, Smith BN, Gallo JM, Ule J, Hirth F, Rogelj B, Houart C, Shaw CE. (2013) Hexanucleotide repeats in ALS/FTD form length-dependent RNA foci, sequester RNA binding proteins, and are neurotoxic. Cell Rep. 5(5):1178-1186.		Synthetic sequences.		RNA pull-down assay using SH-SY5Y cell extract.
hnRNP H2	UGGGACUGGGACUGGGACUG	-5	Gene Name and Synonymous: HNRNPH2, heterogeneous nuclear ribonucleoprotein H2 (H'), FTP3, HNRPH', HNRPH2, hnRNPH'.	16000324	Venables JP, Bourgeois CF, Dalgliesh C, Kister L, Stevenin J, Elliott DJ. (2005) Up-regulation of the ubiquitous alternative splicing factor Tra2beta causes inclusion of a germ cell-specific exon. Hum Mol Genet. 14(16):2289-22303.		Constructs of wt or mutated HBB [3043]_EX2 - HIPK3 [10114]_INT3 - HIPK3 [10114]_EX3bis - HIPK3 [10114]_INT3 - HBB [3043]_ EX3. Sequences deriving from HIPK3 [10114].	In vivo splicing in HEK293 cells.	Pulldown assay and western blot with HeLa NE
hnRNP H3	AGGGC	-6	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H3	AGGGU	-6	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H3	AGGGA	-6	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H3	AGGGG	-6	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H3	GGGGG	-6	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H3	CGGGGGGGGC	-6	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H3	AGGGGAGGGG	-8	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H3	AGGGAAGGGA	-8	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H3	AGGGAAGGGAAGGGAAGGGA	-8	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H3	AGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGA	-8	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H3	UGGGC	-2	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H3	CGGGC	-2	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H3	CGAGAGCGUCGGUAUUAAGCGGGGGAGAAUUAGAUAAAUG	-5	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP H3	GGGGGGG	-7	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	3386636	Swanson MS, Dreyfuss G. (1988) Classification and purification of proteins of heterogeneous nuclear ribonucleoprotein particles by RNA-binding specificities. Mol Cell Biol. 8(5):2237-2241.		homopolymers		Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract.
hnRNP H3	UGUGGG	-5	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	10072387	Chen CD, Kobayashi R, Helfman DM. (1999) Binding of hnRNP H to an exonic splicing silencer is involved in the regulation of alternative splicing of the rat beta-tropomyosin gene. Genes Dev. 13(5):593-606.		Construct of rat beta-tropomyosin Tpm2 [500450] EX5-INT5-EX7	In vitro splicing in HeLa nuclear extracts.	UV crosslink, competition assays, immunoblot, immunodepletion in HeLa nuclear extracts.
hnRNP H3	GGGGGCUG	-5	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	11003644	Markovtsov V, Nikolic JM, Goldman JA, Turck CW, Chou MY, Black DL. (2000) Cooperative assembly of an hnRNP complex induced by a tissue-specific homolog of polypyrimidine tract binding protein. Mol Cell Biol. 20(20):7463-7479.		Sequences from position 37 to 70 downstream murine c-src [20779] EX_N1 for EMSA and UV crosslink. Synthesized 37-mer RNA for RNA affinity purification. Construct of EX3 - INT - EX4 murine c-src for in vitro splicing.	In vitro splicing with WERI-1 extracts.	RNA affinity purification with HeLa or WERI-1 nuclear extracts. UV crosslink in HeLa and in WERI-1 extracts. EMSA with purified protein. Immunoprecipitation and Western blot.
hnRNP H3	GGCGGCCAGAGGGUGUGCGGAGCUGGUGGGGAGGAGCCUGGAGAGAAGGGGCAGAGCUGGGGGCUGAGGGAGACCCCCCC	-10	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	11421362	Hastings ML, Wilson CM, Munroe SH. (2001) A purine-rich intronic element enhances alternative splicing of thyroid hormone receptor mRNA. RNA. 7(6):859-874.		Constructs of THRA [7067] EX7 - INT7 - EX8 - INT8 - EX9 - INT9 - EX10	In vitro splicing with HeLa NE	UV cross-linking, northwestern blotting, immunoprecipitation with HeLa NE and recombinant proteins.
hnRNP H3	AUUGGGUGU	-8	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	11526107	Jacquenet S, Mereau A, Bilodeau PS, Damier L, Stoltzfus CM, Branlant C. (2001) A second exon splicing silencer within human immunodeficiency virus type 1 tat exon 2 represses splicing of Tat mRNA and binds protein hnRNP H. J Biol Chem. 276(44): 40464-75.		Constructs of HIV-1 Tat [155871] EX2.	In vitro splicing with HeLa nuclear extracts. In vivo splicing in HeLa.	EMSA, UV crosslink, immunoprecipitation and immunoblot.
hnRNP H3	AUCGGGCGU	-5	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	11526107	Jacquenet S, Mereau A, Bilodeau PS, Damier L, Stoltzfus CM, Branlant C. (2001) A second exon splicing silencer within human immunodeficiency virus type 1 tat exon 2 represses splicing of Tat mRNA and binds protein hnRNP H. J Biol Chem. 276(44): 40464-75.		Constructs of HIV-1 Tat [155871] EX2.	In vitro splicing with HeLa nuclear extracts. In vivo splicing in HeLa.	EMSA, UV crosslink, immunoprecipitation and immunoblot.
hnRNP H3	CGGGA	5	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	11847131	Caputi M, Zahler AM. (2002) SR proteins and hnRNP H regulate the splicing of the HIV-1 tev-specific exon 6D. EMBO J. 21(4): 845-855.		Construct of HIV-1 env [155971] EX_6D and part of flanking introns.	In vitro splicing with HeLa nuclear extracts	RNA affinity chromatography assay and immunoblot.
hnRNP H3	GGAGGA	-5	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	12612063	Rooke N, Markovtsov V, Cagavi E, Black DL. (2003) Roles for SR proteins and hnRNP A1 in the regulation of c-src exon N1. Mol Cell Biol. 23(6):1874-1884.		Construct of c-src [20779] EX_N1.	In vitro splicing with Weri-1, Weri-1 S100 and HeLa nuclear extracts.	UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts.
hnRNP H3	AAGGUG	-5	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	12612063	Rooke N, Markovtsov V, Cagavi E, Black DL. (2003) Roles for SR proteins and hnRNP A1 in the regulation of c-src exon N1. Mol Cell Biol. 23(6):1874-1884.		Construct of c-src [20779] EX_N1.	In vitro splicing with Weri-1, Weri-1 S100 and HeLa nuclear extracts.	UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts.
hnRNP H3	UGGGG	-5	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	12732620	Pagani F, Buratti E, Stuani C, Baralle FE. (2003) Missense, nonsense, and neutral mutations define juxtaposed regulatory elements of splicing in cystic fibrosis transmembrane regulator exon 9. J Biol Chem. 278(29):26580-26588.		Construct of CFTR [1080] EX8 - INT8 - EX9 - INT9 - EX10	In vivo splicing in Hep3B cells of WT and mutant CFTR constructs.	UV cross-linking, pull-down assay, immunoblotting in HeLa nuclear extracts with wt and mutated RNAs.
hnRNP H3	GGGGU	-5	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	12732620	Pagani F, Buratti E, Stuani C, Baralle FE. (2003) Missense, nonsense, and neutral mutations define juxtaposed regulatory elements of splicing in cystic fibrosis transmembrane regulator exon 9. J Biol Chem. 278(29):26580-26588.		Construct of CFTR [1080] EX8 - INT8 - EX9 - INT9 - EX10	In vivo splicing in Hep3B cells of WT and mutant CFTR constructs.	UV cross-linking, pull-down assay, immunoblotting in HeLa nuclear extracts with wt and mutated RNAs.
hnRNP H3	UGGGA	-5	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	12732620	Pagani F, Buratti E, Stuani C, Baralle FE. (2003) Missense, nonsense, and neutral mutations define juxtaposed regulatory elements of splicing in cystic fibrosis transmembrane regulator exon 9. J Biol Chem. 278(29):26580-26588.		Construct of CFTR [1080] EX8 - INT8 - EX9 - INT9 - EX10	In vivo splicing in Hep3B cells of WT and mutant CFTR constructs.	UV cross-linking, pull-down assay, immunoblotting in HeLa nuclear extracts with wt and mutated RNAs.
hnRNP H3	AGGGUUGAGGGGAGCAGGGU	-7	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	15208309	Expert-Bezancon A, Sureau A, Durosay P, Salesse R, Groeneveld H, Lecaer JP, Marie J. (2004) hnRNP A1 and the SR proteins ASF/SF2 and SC35 have antagonistic functions in splicing of beta-tropomyosin exon 6B. J Biol Chem. 279(37):38249-38259.		Sequences deriving from TPM3 [396430] and synthesized sequences. Construct of chicken TPM3 [396430] EX6B - INT7 - EX7.	In vitro splicing in HeLa NE	EMSA with recombinant protein. RNA affinity chromatography and immunoprecipitation in HeLa NE
hnRNP H3	CGGGUUGACGGGAGCACGGU	-5	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	15208309	Expert-Bezancon A, Sureau A, Durosay P, Salesse R, Groeneveld H, Lecaer JP, Marie J. (2004) hnRNP A1 and the SR proteins ASF/SF2 and SC35 have antagonistic functions in splicing of beta-tropomyosin exon 6B. J Biol Chem. 279(37):38249-38259.		Sequences deriving from TPM3 [396430] and synthesized sequences. Construct of chicken TPM3 [396430] EX6B - INT7 - EX7.	In vitro splicing in HeLa NE	EMSA with recombinant protein. RNA affinity chromatography and immunoprecipitation in HeLa NE
hnRNP H3	AGUGUUGAGUGGAGCAGUGGU	-5	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	15208309	Expert-Bezancon A, Sureau A, Durosay P, Salesse R, Groeneveld H, Lecaer JP, Marie J. (2004) hnRNP A1 and the SR proteins ASF/SF2 and SC35 have antagonistic functions in splicing of beta-tropomyosin exon 6B. J Biol Chem. 279(37):38249-38259.		Sequences deriving from TPM3 [396430] and synthesized sequences. Construct of chicken TPM3 [396430] EX6B - INT7 - EX7.	In vitro splicing in HeLa NE	EMSA with recombinant protein. RNA affinity chromatography and immunoprecipitation in HeLa NE
hnRNP H3	GGGAGGAAGAAAUAGAAGAUGCAGAAGAGG	-5	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	16000324	Venables JP, Bourgeois CF, Dalgliesh C, Kister L, Stevenin J, Elliott DJ. (2005) Up-regulation of the ubiquitous alternative splicing factor Tra2beta causes inclusion of a germ cell-specific exon. Hum Mol Genet. 14(16):2289-22303.		Constructs of wt or mutated HBB [3043]_EX2 - HIPK3 [10114]_INT3 - HIPK3 [10114]_EX3bis - HIPK3 [10114]_INT3 - HBB [3043]_ EX3. Sequences deriving from HIPK3 [10114].	In vivo splicing in HEK293 cells.	Pulldown assay and western blot with HeLa NE
hnRNP H3	GUAUCCUUCCCUGGCGGGGGUGGGAGAGCAGCAGGGCCAGGGGGGUGACACACC	-5	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	16308319	McNally LM, Yee L, McNally MT. (2006) Heterogeneous nuclear ribonucleoprotein H is required for optimal U11 small nuclear ribonucleoprotein binding to a retroviral RNA-processing control element: implications for U12-dependent RNA splicing. J Biol Chem. 281(5):2478-2488.		Sequences deriving from wt and mutated RSV NRS region, SCN4A [6329], NOP2 [4839]. Constructs of EX_[RSV NRS] - INT_[RSV NRS] - NOP2 [4839] INT - NOP2 [4839] EX. Constructs of SCN4A [6329] EX2 - INT2 - EX3. Constructs of NOP2 [4839] EX7 - INT7 - EX8.	In vivo splicing in HEK293	UV cross-linking, MALDI-TOF and western blot with HeLa NE
hnRNP H3	AUAUCCUGCCCAAGAUGGGAGAGGCGGGAGGGGUUAGGGAUGGGCGAGAUGGGGUGCUGU	-10	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	16308319	McNally LM, Yee L, McNally MT. (2006) Heterogeneous nuclear ribonucleoprotein H is required for optimal U11 small nuclear ribonucleoprotein binding to a retroviral RNA-processing control element: implications for U12-dependent RNA splicing. J Biol Chem. 281(5):2478-2488.		Sequences deriving from wt and mutated RSV NRS region, SCN4A [6329], NOP2 [4839]. Constructs of EX_[RSV NRS] - INT_[RSV NRS] - NOP2 [4839] INT - NOP2 [4839] EX. Constructs of SCN4A [6329] EX2 - INT2 - EX3. Constructs of NOP2 [4839] EX7 - INT7 - EX8.	In vivo splicing in HEK293	UV cross-linking, MALDI-TOF and western blot with HeLa NE
hnRNP H3	AUAUCCUGCCCAAGAUGUGAGAGGCGUGAGGUGUUAGGGAUGGGCGAGAUGGGGUGCUGU	-4	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	16308319	McNally LM, Yee L, McNally MT. (2006) Heterogeneous nuclear ribonucleoprotein H is required for optimal U11 small nuclear ribonucleoprotein binding to a retroviral RNA-processing control element: implications for U12-dependent RNA splicing. J Biol Chem. 281(5):2478-2488.		Sequences deriving from wt and mutated RSV NRS region, SCN4A [6329], NOP2 [4839]. Constructs of EX_[RSV NRS] - INT_[RSV NRS] - NOP2 [4839] INT - NOP2 [4839] EX. Constructs of SCN4A [6329] EX2 - INT2 - EX3. Constructs of NOP2 [4839] EX7 - INT7 - EX8.	In vivo splicing in HEK293	UV cross-linking, MALDI-TOF and western blot with HeLa NE
hnRNP H3	AUAUCCUGCCCAAGAUGGGAGAGGCGGGAGGGGUUAGUGAUGUGCGAGAUGGUGUGCUGU	-8	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	16308319	McNally LM, Yee L, McNally MT. (2006) Heterogeneous nuclear ribonucleoprotein H is required for optimal U11 small nuclear ribonucleoprotein binding to a retroviral RNA-processing control element: implications for U12-dependent RNA splicing. J Biol Chem. 281(5):2478-2488.		Sequences deriving from wt and mutated RSV NRS region, SCN4A [6329], NOP2 [4839]. Constructs of EX_[RSV NRS] - INT_[RSV NRS] - NOP2 [4839] INT - NOP2 [4839] EX. Constructs of SCN4A [6329] EX2 - INT2 - EX3. Constructs of NOP2 [4839] EX7 - INT7 - EX8.	In vivo splicing in HEK293	UV cross-linking, MALDI-TOF and western blot with HeLa NE
hnRNP H3	AUAUCCUGCCCAAGAUGUGAGAGGCGUGAGGUGUUAGUGAUGUGCGAGAUGGUGUGCUGU	-1	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	16308319	McNally LM, Yee L, McNally MT. (2006) Heterogeneous nuclear ribonucleoprotein H is required for optimal U11 small nuclear ribonucleoprotein binding to a retroviral RNA-processing control element: implications for U12-dependent RNA splicing. J Biol Chem. 281(5):2478-2488.		Sequences deriving from wt and mutated RSV NRS region, SCN4A [6329], NOP2 [4839]. Constructs of EX_[RSV NRS] - INT_[RSV NRS] - NOP2 [4839] INT - NOP2 [4839] EX. Constructs of SCN4A [6329] EX2 - INT2 - EX3. Constructs of NOP2 [4839] EX7 - INT7 - EX8.	In vivo splicing in HEK293	UV cross-linking, MALDI-TOF and western blot with HeLa NE
hnRNP H3	GGUUGGGAGAGGGAUUUC	-10	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	16308319	McNally LM, Yee L, McNally MT. (2006) Heterogeneous nuclear ribonucleoprotein H is required for optimal U11 small nuclear ribonucleoprotein binding to a retroviral RNA-processing control element: implications for U12-dependent RNA splicing. J Biol Chem. 281(5):2478-2488.		Sequences deriving from wt and mutated RSV NRS region, SCN4A [6329], NOP2 [4839]. Constructs of EX_[RSV NRS] - INT_[RSV NRS] - NOP2 [4839] INT - NOP2 [4839] EX. Constructs of SCN4A [6329] EX2 - INT2 - EX3. Constructs of NOP2 [4839] EX7 - INT7 - EX8.	In vivo splicing in HEK293	UV cross-linking, MALDI-TOF and western blot with HeLa NE
hnRNP H3	GGUUGUGAGAGUGAUUUC	-1	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	16308319	McNally LM, Yee L, McNally MT. (2006) Heterogeneous nuclear ribonucleoprotein H is required for optimal U11 small nuclear ribonucleoprotein binding to a retroviral RNA-processing control element: implications for U12-dependent RNA splicing. J Biol Chem. 281(5):2478-2488.		Sequences deriving from wt and mutated RSV NRS region, SCN4A [6329], NOP2 [4839]. Constructs of EX_[RSV NRS] - INT_[RSV NRS] - NOP2 [4839] INT - NOP2 [4839] EX. Constructs of SCN4A [6329] EX2 - INT2 - EX3. Constructs of NOP2 [4839] EX7 - INT7 - EX8.	In vivo splicing in HEK293	UV cross-linking, MALDI-TOF and western blot with HeLa NE
hnRNP H3	GAUCACUGGGGUGGAUCAUCCAGGUGGGGCUUUU	-5	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	16396608	Martinez-Contreras R, Fisette JF, Nasim FU, Madden R, Cordeau M, Chabot B. (2006) Intronic binding sites for hnRNP A/B and hnRNP F/H proteins stimulate pre-mRNA splicing. PLoS Biol. 4(2):e21.		Constructs of hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - EXL2_[Adenovirus] and hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - BCL2L1 [598] EX3	In vitro splicing with HeLa NE	Immunoprecipitation, Gel shift and RNase H protection assays
hnRNP H3	GGGUCGAGGGG	-5	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	16396608	Martinez-Contreras R, Fisette JF, Nasim FU, Madden R, Cordeau M, Chabot B. (2006) Intronic binding sites for hnRNP A/B and hnRNP F/H proteins stimulate pre-mRNA splicing. PLoS Biol. 4(2):e21.		Constructs of hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - EXL2_[Adenovirus] and hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - BCL2L1 [598] EX3	In vitro splicing with HeLa NE	Immunoprecipitation, Gel shift and RNase H protection assays
hnRNP H3	CAGAAGGGGAGGGGUUCCA	-3	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	17567613	Wang E, Dimova N, Cambi F. (2007) PLP/DM20 ratio is regulated by hnRNPH and F and a novel G-rich enhancer in oligodendrocytes. Nucleic Acids Res. 35(12):4164-4178.		Sequences deriving from PLP1 [5354]. Constructs of PLP1 [5354] INT3 - EX3A - E3B - INT4.	In vivo splicing in oligodendroglial precursors.	RNA-affinity precipitations of oligodendroglial precursor NE, mass spectroscopy, western blot. siRNA
hnRNP H3	AACAAGGGGUGGGGGAAAA	-3	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	17567613	Wang E, Dimova N, Cambi F. (2007) PLP/DM20 ratio is regulated by hnRNPH and F and a novel G-rich enhancer in oligodendrocytes. Nucleic Acids Res. 35(12):4164-4178.		Sequences deriving from PLP1 [5354]. Constructs of PLP1 [5354] INT3 - EX3A - E3B - INT4.	In vivo splicing in oligodendroglial precursors.	RNA-affinity precipitations of oligodendroglial precursor NE, mass spectroscopy, western blot. siRNA
hnRNP H3	UGGGU	-5	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	18806275	Masuda A, Shen XM, Ito M, Matsuura T, Engel AG, Ohno K. (2008) hnRNP H enhances skipping of a nonfunctional exon P3A in CHRNA1 and a mutation disrupting its binding causes congenital myasthenic syndrome. Hum Mol Genet. 17(24):4022-4035.		Construct of CHRNA1 [1134] EX2-INT2-EX3-INT-EX_P3A-INT-EX4	In vivo splicing assay in HeLa	Western blotting using HEK293T nuclear extract, immunodepletion, surface plasmon resonance
hnRNP H3	GGGAAUGUGGG	-5	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	19506027	Millevoi S, Decorsiere A, Loulergue C, Iacovoni J, Bernat S, Antoniou M, Vagner S. (2009) A physical and functional link between splicing factors promotes pre-mRNA 3' end processing. Nucleic Acids Res. 37(14):4672-4683.		Sequences deriving from HBB [3043]		UV cross-linking, immunoprecipitation with HeLa NE and recombinant protein
hnRNP H3	GAUCACUGGGGUGGAUCAU	-1	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	19926721	Fisette JF, Toutant J, Dugre-Brisson S, Desgroseillers L, Chabot B. (2010) hnRNP A1 and hnRNP H can collaborate to modulate 5' splice site selection. RNA. 16(1):228-238.		Constructs of hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - EXL2_[Adenovirus] and hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - BCL2L1 [598] EX3	In vitro splicing with HeLa NE	Filter binding assay, EMSA using recombinant protein
hnRNP H3	GAUCACUGUGGUGGAUCAUCCAGGUGUGGCUUUU	-1	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	19926721	Fisette JF, Toutant J, Dugre-Brisson S, Desgroseillers L, Chabot B. (2010) hnRNP A1 and hnRNP H can collaborate to modulate 5' splice site selection. RNA. 16(1):228-238.		Constructs of hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - EXL2_[Adenovirus] and hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - BCL2L1 [598] EX3	In vitro splicing with HeLa NE	Filter binding assay, EMSA using recombinant protein
hnRNP H3	GAUCACUGUGGUGGAUCAUCCAGGUGGGGCUUUU	-1	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	19926721	Fisette JF, Toutant J, Dugre-Brisson S, Desgroseillers L, Chabot B. (2010) hnRNP A1 and hnRNP H can collaborate to modulate 5' splice site selection. RNA. 16(1):228-238.		Constructs of hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - EXL2_[Adenovirus] and hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - BCL2L1 [598] EX3	In vitro splicing with HeLa NE	Filter binding assay, EMSA using recombinant protein
hnRNP H3	CCAUGGUUUGGGAGUGGGAAGGUGGGGAG	-5	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	19926721	Fisette JF, Toutant J, Dugre-Brisson S, Desgroseillers L, Chabot B. (2010) hnRNP A1 and hnRNP H can collaborate to modulate 5' splice site selection. RNA. 16(1):228-238.		Constructs of hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - EXL2_[Adenovirus] and hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - BCL2L1 [598] EX3	In vitro splicing with HeLa NE	Filter binding assay, EMSA using recombinant protein
hnRNP H3	CCAUGGUUUGGGGGCAGUAGUUGG	-8	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	19926721	Fisette JF, Toutant J, Dugre-Brisson S, Desgroseillers L, Chabot B. (2010) hnRNP A1 and hnRNP H can collaborate to modulate 5' splice site selection. RNA. 16(1):228-238.		Constructs of hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - EXL2_[Adenovirus] and hnRNP A1 [15382] EX7/EX7B - INT_[lambda phage DNA] - BCL2L1 [598] EX3	In vitro splicing with HeLa NE	Filter binding assay, EMSA using recombinant protein
hnRNP H3	GGGGA	-5	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	11571276	Caputi M, Zahler AM. (2001) Determination of the RNA Binding Specificity of the Heterogeneous Nuclear Ribonucleoprotein (hnRNP) H/H'/F/2H9 Family. J Biol Chem. 276(47): 43850-43859.		Synthesized oligos, constructs of Rev-dependent export (p17gag INS), beta-tropomyosin TPM2 [7169], c-src [20779].		RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography.
hnRNP H3	GGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCC	-5	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	24290757	Lee YB, Chen HJ, Peres JN, Gomez-Deza J, Attig J, Stalekar M, Troakes C, Nishimura AL, Scotter EL, Vance C, Adachi Y, Sardone V, Miller JW, Smith BN, Gallo JM, Ule J, Hirth F, Rogelj B, Houart C, Shaw CE. (2013) Hexanucleotide repeats in ALS/FTD form length-dependent RNA foci, sequester RNA binding proteins, and are neurotoxic. Cell Rep. 5(5):1178-1186.		Synthetic sequences.		RNA pull-down assay using SH-SY5Y cell extract.
hnRNP H3	AAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACC	-4	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP H3	UGGGACUGGGACUGGGACUG	-5	Gene Name and Synonymous: HNRNPH3, heterogeneous nuclear ribonucleoprotein H3 (2H9), hnRNP 2H9, HNRPH3, FLJ34092.	16000324	Venables JP, Bourgeois CF, Dalgliesh C, Kister L, Stevenin J, Elliott DJ. (2005) Up-regulation of the ubiquitous alternative splicing factor Tra2beta causes inclusion of a germ cell-specific exon. Hum Mol Genet. 14(16):2289-22303.		Constructs of wt or mutated HBB [3043]_EX2 - HIPK3 [10114]_INT3 - HIPK3 [10114]_EX3bis - HIPK3 [10114]_INT3 - HBB [3043]_ EX3. Sequences deriving from HIPK3 [10114].	In vivo splicing in HEK293 cells.	Pulldown assay and western blot with HeLa NE
hnRNP I (PTB)	CUCUCU	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	11003644	Markovtsov V, Nikolic JM, Goldman JA, Turck CW, Chou MY, Black DL. (2000) Cooperative assembly of an hnRNP complex induced by a tissue-specific homolog of polypyrimidine tract binding protein. Mol Cell Biol. 20(20):7463-7479.		Sequences from position 37 to 70 downstream murine c-src [20779] EX_N1 for EMSA and UV crosslink. Synthesized 37-mer RNA for RNA affinity purification. Construct of EX3 - INT - EX4 murine c-src for in vitro splicing.	In vitro splicing with WERI-1 extracts.	RNA affinity purification with HeLa or WERI-1 nuclear extracts. UV crosslink in HeLa and in WERI-1 extracts. EMSA with purified protein. Immunoprecipitation and Western blot.
hnRNP I (PTB)	UCUUC	-10	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	11788707	Yuan X, Davydova N, Conte MR, Curry S, Matthews S. (2002) Chemical shift mapping of RNA interactions with the polypyrimidine tract binding protein. Nucleic Acids Res. 30(2):456-462.		Synthesized sequences		Chemical shift mapping (NMR)
hnRNP I (PTB)	CCUCUGCGCUUCUUCCCUUCCCUCCUCCCUGGCUCAG	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	11931771	Charlet-B N, Logan P, Singh G, Cooper TA. (2002) Dynamic antagonism between ETR-3 and PTB regulates cell type-specific alternative splicing. Mol Cell. 9(3):649-658.		Construct of cardiac troponin T TNNT2 [7139] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts. In vivo splicing in HeLa.	UV crosslink, western blot, immunoprecipitation in HeLa nuclear extracts.
hnRNP I (PTB)	UUAUUUUUCCCC	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	9858533	Lou H, Helfman DM, Gagel RF, Berget SM. (1999) Polypyrimidine tract-binding protein positively regulates inclusion of an alternative 3'-terminal exon. Mol Cell Biol. 19(1):78-85.		Constructs of CALCA [796] EX4 - INT4 - EX5 - INT5 - EX6 fused to a heterologous first exon from adenovirus used for in vivo splicing.	In vivo splicing in HeLa and T98G cells.	EMSA, UV crosslink, immunoprecipitation with recombinant protein.
hnRNP I (PTB)	UUUUUUU	-7	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	8449401	Patton JG, Porro EB, Galceran J, Tempst P, Nadal-Ginard B. (1993) Cloning and characterization of PSF, a novel pre-mRNA splicing factor. Genes Dev. 7(3):393-406.	PSF has no affinity to poly(rA), poly(rC) and poly(rG).	Construct of tropomyosin 1 alpha TPM1 [7168] EX2 - INT2 - EX3 for splicing. Construct of branchpoint and polypyrimidine tract element upstream of TPM1 EX3 for UV-crosslink.	In vitro splicing in HeLa nuclear extracts.	RNA affinity chromatography confirmed by UV crosslink and Western blot using HeLa nuclear extracts.
hnRNP I (PTB)	CUCCGCUCCUCUUC	5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	9858533	Lou H, Helfman DM, Gagel RF, Berget SM. (1999) Polypyrimidine tract-binding protein positively regulates inclusion of an alternative 3'-terminal exon. Mol Cell Biol. 19(1):78-85.		Constructs of CALCA [796] EX4 - INT4 - EX5 - INT5 - EX6 fused to a heterologous first exon from adenovirus used for in vivo splicing.	In vivo splicing in HeLa and T98G cells.	EMSA, UV crosslink, immunoprecipitation with recombinant protein.
hnRNP I (PTB)	UCUUCUU	-8	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	9436911	Gooding C, Roberts GC, Smith CW. (1998) Role of an inhibitory pyrimidine element and polypyrimidine tract binding protein in repression of a regulated alpha-tropomyosin exon. RNA. 4(1): 85-100.		Constructs of rat alpha-tropomyosin (TM) Tpm2 [24851] EX1 - INT - EX3 - INT3 - EX4 and EX2 - INT2 - EX3 - INT3 - EX4.	In vivo splicing in transiently transfected L fibroblast and PA smooth muscle cells	in vitro splicing in HeLa nuclear extract.
hnRNP I (PTB)	CCUUCCUU	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	16260624	Lin JC, Tarn WY. (2005) Exon selection in alpha-tropomyosin mRNA is regulated by the antagonistic action of RBM4 and PTB. Mol Cell Biol. 25(22): 10111-10121.	PTB and RBM4 are in competition for CU1 element. PTB appear to bind with more affinity than RBM4.	Construct of alpha-TM [TPM1, 7168] EX8 - INT8 - EX9a - INT9a - EX9b and EX1 - INT1 - EX2b - INT2b - EX3.	In vivo splicing in HEK293 cells.	Mutational analysis.
hnRNP I (PTB)	UUCUUCUUCUUCUUCUUCUUCUUCUUCUUC	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	18597733	Baralle M, Pastor T, Bussani E, Pagani F. (2008) Influence of Friedreich ataxia GAA noncoding repeat expansions on pre-mRNA processing. Am J Hum Genet. 83(1): 77-88.		Synthesized sequences.		Mass spectrometry, immunoblot analysis.
hnRNP I (PTB)	UCUUU	-6	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	11788707	Yuan X, Davydova N, Conte MR, Curry S, Matthews S. (2002) Chemical shift mapping of RNA interactions with the polypyrimidine tract binding protein. Nucleic Acids Res. 30(2):456-462.		Synthesized sequences		Chemical shift mapping (NMR)
hnRNP I (PTB)	UCCACUUUCAAGUGACCCCUUACCUACUCACACCACUGCAUUCUCACCCGCAAGCACCUU	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	17664280	Melton AA, Jackson J, Wang J, Lynch KW. (2007) Combinatorial control of signal-induced exon repression by hnRNP L and PSF. Mol Cell Biol. 27(19): 6972-6984.	In this context, hnRNP K, hnRNP D, hnRNP A1, hnRNP A2/B1 do no bind CACUGGAUUCUCACCGGAAGUA and hnRNP A1, hnRNP A2/B1 do no bind CACUGCAUUCUCACCGCAAGCA.	Synthesized sequences. Construct CD45 [PTPRC, 5788] EX3 - INT - EX4 - INT - EX7.	In vitro splicing in JSL1 nuclear extract.	Western blotting analysis of direct RNA affinity purifications of JSL1 nuclear extract.
hnRNP I (PTB)	UCCACUUUCAAGUGACCCCUUACCUACUCACACCACUGGAUUCUCACCCGGAAGUACCUU	-2	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	17664280	Melton AA, Jackson J, Wang J, Lynch KW. (2007) Combinatorial control of signal-induced exon repression by hnRNP L and PSF. Mol Cell Biol. 27(19): 6972-6984.	In this context, hnRNP K, hnRNP D, hnRNP A1, hnRNP A2/B1 do no bind CACUGGAUUCUCACCGGAAGUA and hnRNP A1, hnRNP A2/B1 do no bind CACUGCAUUCUCACCGCAAGCA.	Synthesized sequences. Construct CD45 [PTPRC, 5788] EX3 - INT - EX4 - INT - EX7.	In vitro splicing in JSL1 nuclear extract.	Western blotting analysis of direct RNA affinity purifications of JSL1 nuclear extract.
hnRNP I (PTB)	CCUUUCCC	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	17548433	Paradis C, Cloutier P, Shkreta L, Toutant J, Klarskov K, Chabot B. (2007) hnRNP I/PTB can antagonize the splicing repressor activity of SRp30c. RNA 13: 1287-1300.		Synthesized oligos. Sequences of 20nt random for SELEX.	In vitro splicing with HeLa nuclear extracts, siRNA.	SELEX of 20nt random with recombinant protein. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts.
hnRNP I (PTB)	UCUUUCUCCUUUUCU	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	19147685	Bian Y, Masuda A, Matsuura T, Ito M, Okushin K, Engel AG, Ohno K. (2009) Tannic acid facilitates expression of the polypyrimidine tract binding protein and alleviates deleterious inclusion of CHRNA1 exon P3A due to an hnRNP H-disrupting mutation in congenital myasthenic syndrome. Hum Mol Genet. 18(7):1229-1237.		Construct of CHRNA1 [1134] INT3 - EX_P3A - INT_P3A.	In vivo splicing in HEK293T and HeLa cells. Downregulation by siRNA and upregulation by overexpression.	In vitro UV cross-linking and immunoprecipitation, Immunoblotting, Surface plasmon resonance analysis.
hnRNP I (PTB)	UCUUCUCUCUU	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	12649496	Gromak N, Matlin AJ, Cooper TA, Smith CW. (2003) Antagonistic regulation of alpha-actinin alternative splicing by CELF proteins and polypyrimidine tract binding protein. RNA. 9(4):443-456.		Construct of rat Actn1 [81634] EX_NM - INT	In vitro splicing with HeLa nuclear extracts.	UV cross-link with recombinant protein and with HeLa nuclear extract containing increasing protein concentrations. Mutation analysis.
hnRNP I (PTB)	CUUCUCUCU	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	15840818	Amir-Ahmady B, Boutz PL, Markovtsov V, Phillips ML, Black DL. (2005) Exon repression by polypyrimidine tract binding protein. RNA. 11(5):699-716.		Several constructs based on beta globin HBB [3043] and SRC [20779]	In vitro splicing with HeLa and WERI nuclear extracts.	UV-crosslink, EMSA
hnRNP I (PTB)	CUUUCUU	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	19561594	Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol. 27(7):667-670.		Synthesized sequences		RNAcompete using recombinant protein
hnRNP I (PTB)	UUUCUUU	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	19561594	Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol. 27(7):667-670.		Synthesized sequences		RNAcompete using recombinant protein
hnRNP I (PTB)	UCUUUCU	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	19561594	Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol. 27(7):667-670.		Synthesized sequences		RNAcompete using recombinant protein
hnRNP I (PTB)	UUACUUU	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	19561594	Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol. 27(7):667-670.		Synthesized sequences		RNAcompete using recombinant protein
hnRNP I (PTB)	UCUAUCU	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	19561594	Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol. 27(7):667-670.		Synthesized sequences		RNAcompete using recombinant protein
hnRNP I (PTB)	UCCCUUUUUUUUCCACAG	-10	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	2533575	Garcia-Blanco MA, Jamison SF, Sharp PA. (1989) Identification and purification of a 62,000-dalton protein that binds specifically to the polypyrimidine tract of introns. Genes Dev. 3(12A):1874-1886.		Synthesized sequences		UV cross-linking, immunoprecipitation in HeLa
hnRNP I (PTB)	CCUUCUUCUUUUUCCUACAG	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	2533575	Garcia-Blanco MA, Jamison SF, Sharp PA. (1989) Identification and purification of a 62,000-dalton protein that binds specifically to the polypyrimidine tract of introns. Genes Dev. 3(12A):1874-1886.		Synthesized sequences		UV cross-linking, immunoprecipitation in HeLa
hnRNP I (PTB)	CCCUUUUUUUUCCACAG	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	2533575	Garcia-Blanco MA, Jamison SF, Sharp PA. (1989) Identification and purification of a 62,000-dalton protein that binds specifically to the polypyrimidine tract of introns. Genes Dev. 3(12A):1874-1886.		Synthesized sequences		UV cross-linking, immunoprecipitation in HeLa
hnRNP I (PTB)	CCCUUUUUUUUCCGGAG	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	2533575	Garcia-Blanco MA, Jamison SF, Sharp PA. (1989) Identification and purification of a 62,000-dalton protein that binds specifically to the polypyrimidine tract of introns. Genes Dev. 3(12A):1874-1886.		Synthesized sequences		UV cross-linking, immunoprecipitation in HeLa
hnRNP I (PTB)	GCAGCCUGGUGCCUCCCUCUUGGCCC	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	9261396	Tsuchihara K, Tanaka T, Hijikata M, Kuge S, Toyoda H, Nomoto A, Yamamoto N, Shimotohno K. (1997) Specific interaction of polypyrimidine tract-binding protein with the extreme 3'-terminal structure of the hepatitis C virus genome, the 3'X. J Virol. 71(9):6720-6726		Synthesized sequences		UV cross-linking, immunoprecipitation, competition assay in PH5CH cells
hnRNP I (PTB)	CCUUUUCCUUCUUCUUAUU	-8	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	9292499	Ashiya M, Grabowski PJ. (1997) A neuron-specific splicing switch mediated by an array of pre-mRNA repressor sites: evidence of a regulatory role for the polypyrimidine tract binding protein and a brain-specific PTB counterpart. RNA. 3(9):996-1015.		Constructs of rat GABRG2 [29709] EX8 - INT8 - EX9 - INT9 - EX10	In vitro splicing in HeLa nuclear extract.	UV cross-linking, competition assay, immunoprecipitation
hnRNP I (PTB)	UGUUUCUCUUUCUCUCCUUU	-2	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	9292499	Ashiya M, Grabowski PJ. (1997) A neuron-specific splicing switch mediated by an array of pre-mRNA repressor sites: evidence of a regulatory role for the polypyrimidine tract binding protein and a brain-specific PTB counterpart. RNA. 3(9):996-1015.		Constructs of rat GABRG2 [29709] EX8 - INT8 - EX9 - INT9 - EX10	In vitro splicing in HeLa nuclear extract.	UV cross-linking, competition assay, immunoprecipitation
hnRNP I (PTB)	GCAAUUCUCUUUUCUGUCU	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	9292499	Ashiya M, Grabowski PJ. (1997) A neuron-specific splicing switch mediated by an array of pre-mRNA repressor sites: evidence of a regulatory role for the polypyrimidine tract binding protein and a brain-specific PTB counterpart. RNA. 3(9):996-1015.		Constructs of rat GABRG2 [29709] EX8 - INT8 - EX9 - INT9 - EX10	In vitro splicing in HeLa nuclear extract.	UV cross-linking, competition assay, immunoprecipitation
hnRNP I (PTB)	UCUUUCCUUCUUUUUUCCUUUCUUUUCCUUCCUUCUUUAAU	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	10037806	Gontarek RR, Gutshall LL, Herold KM, Tsai J, Sathe GM, Mao J, Prescott C, Del Vecchio AM. (1999) hnRNP C and polypyrimidine tract-binding protein specifically interact with the pyrimidine-rich region within the 3'NTR of the HCV RNA genome. Nucleic Acids Res. 27(6):1457-1463.		HCV 3' NTR		UV cross-linking, immunoprecipitation, competition assay with HepG2 cell extract
hnRNP I (PTB)	UUUCUCCUCUUCUUU	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	10856256	Conte MR, Grune T, Ghuman J, Kelly G, Ladas A, Matthews S, Curry S. (2000) Structure of tandem RNA recognition motifs from polypyrimidine tract binding protein reveals novel features of the RRM fold. EMBO J. 19(12):3132-3141.		Synthesized sequences		Filter binding assay using recombinant protein
hnRNP I (PTB)	UCUCU	-6	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	16179478	Oberstrass FC, Auweter SD, Erat M, Hargous Y, Henning A, Wenter P, Reymond L, Amir-Ahmady B, Pitsch S, Black DL, Allain FH. (2005) Structure of PTB bound to RNA: specific binding and implications for splicing regulation. Science. 309(5743):2054-2057.		Synthesized sequences		NMR, EMSA with recombinant protein
hnRNP I (PTB)	UCCUCUUC	-3	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	11788707	Yuan X, Davydova N, Conte MR, Curry S, Matthews S. (2002) Chemical shift mapping of RNA interactions with the polypyrimidine tract binding protein. Nucleic Acids Res. 30(2):456-462.		Synthesized sequences		Chemical shift mapping (NMR)
hnRNP I (PTB)	UCUUCUCU	-6	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	11788707	Yuan X, Davydova N, Conte MR, Curry S, Matthews S. (2002) Chemical shift mapping of RNA interactions with the polypyrimidine tract binding protein. Nucleic Acids Res. 30(2):456-462.		Synthesized sequences		Chemical shift mapping (NMR)
hnRNP I (PTB)	CCCCCUCUCUCUAUCGCUGUCUCUUGAGCCACGC	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	11867641	Expert-Bezancon A, Le Caer JP, Marie J. (2002) Heterogeneous nuclear ribonucleoprotein (hnRNP) K is a component of an intronic splicing enhancer complex that activates the splicing of the alternative exon 6A from chicken beta-tropomyosin pre-mRNA. J Biol Chem. 277(19):16614-16623.		Synthesized sequences. Construct of chicken TPM3 [396430] EX6A - INT6 - EX7	In vitro splicing in HeLa NE	Protein affinity purification with HeLa NE. Mass spectrometry and Western blots. Two-dimensional gel analysis.
hnRNP I (PTB)	CAGCCACCUCUCCCCUCUCCGCACUGCUGCCA	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	11867641	Expert-Bezancon A, Le Caer JP, Marie J. (2002) Heterogeneous nuclear ribonucleoprotein (hnRNP) K is a component of an intronic splicing enhancer complex that activates the splicing of the alternative exon 6A from chicken beta-tropomyosin pre-mRNA. J Biol Chem. 277(19):16614-16623.		Synthesized sequences. Construct of chicken TPM3 [396430] EX6A - INT6 - EX7	In vitro splicing in HeLa NE	Protein affinity purification with HeLa NE. Mass spectrometry and Western blots. Two-dimensional gel analysis.
hnRNP I (PTB)	UACCACCACCCCUUCCCCAUUCCCUUGCCCUGCU	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	11867641	Expert-Bezancon A, Le Caer JP, Marie J. (2002) Heterogeneous nuclear ribonucleoprotein (hnRNP) K is a component of an intronic splicing enhancer complex that activates the splicing of the alternative exon 6A from chicken beta-tropomyosin pre-mRNA. J Biol Chem. 277(19):16614-16623.		Synthesized sequences. Construct of chicken TPM3 [396430] EX6A - INT6 - EX7	In vitro splicing in HeLa NE	Protein affinity purification with HeLa NE. Mass spectrometry and Western blots. Two-dimensional gel analysis.
hnRNP I (PTB)	CUUUCUCUUUCUCUCUCCCUCCCUGUCUUUCCCU	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	11867641	Expert-Bezancon A, Le Caer JP, Marie J. (2002) Heterogeneous nuclear ribonucleoprotein (hnRNP) K is a component of an intronic splicing enhancer complex that activates the splicing of the alternative exon 6A from chicken beta-tropomyosin pre-mRNA. J Biol Chem. 277(19):16614-16623.		Synthesized sequences. Construct of chicken TPM3 [396430] EX6A - INT6 - EX7	In vitro splicing in HeLa NE	Protein affinity purification with HeLa NE. Mass spectrometry and Western blots. Two-dimensional gel analysis.
hnRNP I (PTB)	GUCUCUCUCUCUCAACCUCUUUCUUCCAAUCUCUCUUUCUCAAUCUCUCUGUUUCCCUUUGUC	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	12517964	Kosinski PA, Laughlin J, Singh K, Covey LR. (2003) A complex containing polypyrimidine tract-binding protein is involved in regulating the stability of CD40 ligand (CD154) mRNA. J Immunol. 170(2):979-988.		Sequences deriving from CD40LG [959]		UV cross-linking, EMSA with Jurkat total extracts or immunodepleted extracts
hnRNP I (PTB)	UUUGUCUUCUUCUUUU	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	16109372	Izquierdo JM, Majos N, Bonnal S, Martinez C, Castelo R, Guigo R, Bilbao D, Valcarcel J. (2005) Regulation of Fas alternative splicing by antagonistic effects of TIA-1 and PTB on exon definition. Mol Cell. 19(4):475-484.		Sequences deriving from wt and mutated FAS [355]. Construct of FAS [355] EX5 - INT5 - EX6 - INT6 - EX7	In vitro splicing in HeLa NE	UV cross-linking, immunoprecipitation with HeLa NE
hnRNP I (PTB)	CUCUCUAAAAACUCUCU	-2	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	16179478	Oberstrass FC, Auweter SD, Erat M, Hargous Y, Henning A, Wenter P, Reymond L, Amir-Ahmady B, Pitsch S, Black DL, Allain FH. (2005) Structure of PTB bound to RNA: specific binding and implications for splicing regulation. Science. 309(5743):2054-2057.		Synthesized sequences		NMR, EMSA with recombinant protein
hnRNP I (PTB)	CUCUCUAAAAAAAAAACUCUCU	-4	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	16179478	Oberstrass FC, Auweter SD, Erat M, Hargous Y, Henning A, Wenter P, Reymond L, Amir-Ahmady B, Pitsch S, Black DL, Allain FH. (2005) Structure of PTB bound to RNA: specific binding and implications for splicing regulation. Science. 309(5743):2054-2057.		Synthesized sequences		NMR, EMSA with recombinant protein
hnRNP I (PTB)	CUCUCUAAAAAAAAAAAAAAACUCUCU	-10	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	16179478	Oberstrass FC, Auweter SD, Erat M, Hargous Y, Henning A, Wenter P, Reymond L, Amir-Ahmady B, Pitsch S, Black DL, Allain FH. (2005) Structure of PTB bound to RNA: specific binding and implications for splicing regulation. Science. 309(5743):2054-2057.		Synthesized sequences		NMR, EMSA with recombinant protein
hnRNP I (PTB)	CUCUCUAAAAAAAAAAAAAAAAAAAACUCUCU	-8	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	16179478	Oberstrass FC, Auweter SD, Erat M, Hargous Y, Henning A, Wenter P, Reymond L, Amir-Ahmady B, Pitsch S, Black DL, Allain FH. (2005) Structure of PTB bound to RNA: specific binding and implications for splicing regulation. Science. 309(5743):2054-2057.		Synthesized sequences		NMR, EMSA with recombinant protein
hnRNP I (PTB)	CUCUCUAAAAAAAAAAAAAAAAAAAAAAAAACUCUCU	-6	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	16179478	Oberstrass FC, Auweter SD, Erat M, Hargous Y, Henning A, Wenter P, Reymond L, Amir-Ahmady B, Pitsch S, Black DL, Allain FH. (2005) Structure of PTB bound to RNA: specific binding and implications for splicing regulation. Science. 309(5743):2054-2057.		Synthesized sequences		NMR, EMSA with recombinant protein
hnRNP I (PTB)	CUCUCUAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACUCUCU	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	16179478	Oberstrass FC, Auweter SD, Erat M, Hargous Y, Henning A, Wenter P, Reymond L, Amir-Ahmady B, Pitsch S, Black DL, Allain FH. (2005) Structure of PTB bound to RNA: specific binding and implications for splicing regulation. Science. 309(5743):2054-2057.		Synthesized sequences		NMR, EMSA with recombinant protein
hnRNP I (PTB)	UAACACCCAGUCUGUUCCCCAUGG	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	16950790	Pautz A, Linker K, Hubrich T, Korhonen R, Altenhofer S, Kleinert H. (2006) The polypyrimidine tract-binding protein (PTB) is involved in the post-transcriptional regulation of human inducible nitric oxide synthase expression. J Biol Chem. 281(43):32294-32302.		Sequences deriving from NOS2 [4843]		UV cross-linking using recombinant protein
hnRNP I (PTB)	GAGUUUUCUCCUCUCUCAACUUGUUCUCUCUCCUUCUUU	-10	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	16982681	Sauliere J, Sureau A, Expert-Bezancon A, Marie J. (2006) The polypyrimidine tract binding protein (PTB) represses splicing of exon 6B from the beta-tropomyosin pre-mRNA by directly interfering with the binding of the U2AF65 subunit. Mol Cell Biol. 26(23):8755-8769.		Sequences deriving from chicken TPM3 [396430]. Constructs of chicken TPM3 [396430] EX5 - INT5 - EX6A - INT6 - EX6B - INT6 - EX7.	In vitro splcing in HeLa NE	EMSA with recombinant protein
hnRNP I (PTB)	CCUCCUUCCCUGUGCUCCUUCCGCUCCCACCUUCUUCCCUU	-1	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	16982681	Sauliere J, Sureau A, Expert-Bezancon A, Marie J. (2006) The polypyrimidine tract binding protein (PTB) represses splicing of exon 6B from the beta-tropomyosin pre-mRNA by directly interfering with the binding of the U2AF65 subunit. Mol Cell Biol. 26(23):8755-8769.		Sequences deriving from chicken TPM3 [396430]. Constructs of chicken TPM3 [396430] EX5 - INT5 - EX6A - INT6 - EX6B - INT6 - EX7.	In vitro splcing in HeLa NE	EMSA with recombinant protein
hnRNP I (PTB)	UAUUCUUUCUGAACAGUAUUUAAGGUUUCCAAUAAAAUGUACACCCCUCAG	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	17466948	Reyes R, Izquierdo JM. (2007) The RNA-binding protein PTB exerts translational control on 3'-untranslated region of the mRNA for the ATP synthase beta-subunit. Biochem Biophys Res Commun. 357(4):1107-1112.		Sequences deriving from ATP5B [506]		EMSA supershift, UV cross-linking and immunoprecipitation with HeLa cellular extracts and recombinant protein.
hnRNP I (PTB)	UUGUUUGAUUUCUUAAAGU	-8	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	17507659	Hall-Pogar T, Liang S, Hague LK, Lutz CS. (2007) Specific trans-acting proteins interact with auxiliary RNA polyadenylation elements in the COX-2 3'-UTR. RNA. 13(7):1103-1115.		Sequences deriving from PTGS2 [5743]		Western blot with HeLa NE
hnRNP I (PTB)	GGCGAGAAAUAACUCAUUUCUCCUUUUUUUCUUCUCUCUUCUGUCUGAAUUCUCCCUGUCUCCCUUCCUGUGGGCCAUGGGGCUCA	-10	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	17592047	Matlin AJ, Southby J, Gooding C, Smith CW. (2007) Repression of alpha-actinin SM exon splicing by assisted binding of PTB to the polypyrimidine tract. RNA. 13(8):1214-1223.		Sequences deriving from rat Actn1 [81634]. Constructs of rat Actn1 [81634] EX_NM - INT - EX_SM.	In vitro splicing in HeLa NE	UV cross-linking and immunoprecipitation with HeLa NE. UV cross-linking and EMSA with recombinant protein.
hnRNP I (PTB)	GGCUAUCUUUCCUGGGAACCUGCUUGGGUAUCCGCCUCCUCUCCCUCGUCACAUCUCACCUGUGGACUGGUCUUCUGCAUUUCUUUGCUCUG	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	17592047	Matlin AJ, Southby J, Gooding C, Smith CW. (2007) Repression of alpha-actinin SM exon splicing by assisted binding of PTB to the polypyrimidine tract. RNA. 13(8):1214-1223.		Sequences deriving from rat Actn1 [81634]. Constructs of rat Actn1 [81634] EX_NM - INT - EX_SM.	In vitro splicing in HeLa NE	UV cross-linking and immunoprecipitation with HeLa NE. UV cross-linking and EMSA with recombinant protein.
hnRNP I (PTB)	GGGCCCUUCCUCUUUCUGCUGUCCUCCUGGCCUCUGCCUGGGCCCUCCUCCUCCCACCUGUCUGUCCCUCCUGUGUCUUGGCACCACUGCCCACAG	-7	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	17592047	Matlin AJ, Southby J, Gooding C, Smith CW. (2007) Repression of alpha-actinin SM exon splicing by assisted binding of PTB to the polypyrimidine tract. RNA. 13(8):1214-1223.		Sequences deriving from rat Actn1 [81634]. Constructs of rat Actn1 [81634] EX_NM - INT - EX_SM.	In vitro splicing in HeLa NE	UV cross-linking and immunoprecipitation with HeLa NE. UV cross-linking and EMSA with recombinant protein.
hnRNP I (PTB)	GGCGAGAAAUAACUCAUUUCUCCUUUUUUUCUUCUCUCUUCUAUCUAAAUUCUCCCUGUCUCCCUUCCUGUGGGCCAUGGGGCUCA	-10	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	17592047	Matlin AJ, Southby J, Gooding C, Smith CW. (2007) Repression of alpha-actinin SM exon splicing by assisted binding of PTB to the polypyrimidine tract. RNA. 13(8):1214-1223.		Sequences deriving from rat Actn1 [81634]. Constructs of rat Actn1 [81634] EX_NM - INT - EX_SM.	In vitro splicing in HeLa NE	UV cross-linking and immunoprecipitation with HeLa NE. UV cross-linking and EMSA with recombinant protein.
hnRNP I (PTB)	UCUCCUUGUUUUGCUUUCGAUCUGGACUGUUCUCAGGCAAGCCGGGGAGUAACUUUUAGUUUUGCUCCUGCGAUUAUUCAACUGACGGGCUUUCAUUUCCAUUUCACAUACCCUAGCAACACUUAUACCUUGCGGAAUUGUAUUGGUAGCGUGAAAAAAGCACACUGAGAGG	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	17698501	Dhar D, Roy S, Das S. (2007) Translational control of the interferon regulatory factor 2 mRNA by IRES element. Nucleic Acids Res. 35(16):5409-5421.		Sequences deriving from IRF2 [3660]		UV cross-linking with recombinant protein
hnRNP I (PTB)	CCUCUCCUUCUCUCUGCUUCUCUCUCGCUGGCCCUUAGGAGGAAGGUGGAUGUCAGGUGUGUACCGAGG	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	19226116	Clerte C, Hall KB. (2009) The domains of polypyrimidine tract binding protein have distinct RNA structural preferences. Biochemistry. 48(10):2063-2074.		Sequences deriving from HCV 3' NTR, mouse Gabrg2 [14406] and Src [20779]		EMSA with recombinant protein
hnRNP I (PTB)	UCCUUCUCUCUGCUUCUCUCUCGCUGGCCCUUAGGAGG	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	19226116	Clerte C, Hall KB. (2009) The domains of polypyrimidine tract binding protein have distinct RNA structural preferences. Biochemistry. 48(10):2063-2074.		Sequences deriving from HCV 3' NTR, mouse Gabrg2 [14406] and Src [20779]		EMSA with recombinant protein
hnRNP I (PTB)	GGAUGCUUCGCUGAGGCUGGGGGCUGCUCUCUGCAUGUGCUUCCUCCACCGCCCCUGUGUGUUUCCAGCUCUCUCCCCGUCCCUUUAGCUUACCCUGCAUCCCACCUGUAUGAGCCGACCC	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	19226116	Clerte C, Hall KB. (2009) The domains of polypyrimidine tract binding protein have distinct RNA structural preferences. Biochemistry. 48(10):2063-2074.		Sequences deriving from HCV 3' NTR, mouse Gabrg2 [14406] and Src [20779]		EMSA with recombinant protein
hnRNP I (PTB)	GCAAUUCUCUUUUCUGUCUACAAAUCCAAAG	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	19226116	Clerte C, Hall KB. (2009) The domains of polypyrimidine tract binding protein have distinct RNA structural preferences. Biochemistry. 48(10):2063-2074.		Sequences deriving from HCV 3' NTR, mouse Gabrg2 [14406] and Src [20779]		EMSA with recombinant protein
hnRNP I (PTB)	GAGACUUGGUGGCUCCAUCUUAGCCCUA	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	19226116	Clerte C, Hall KB. (2009) The domains of polypyrimidine tract binding protein have distinct RNA structural preferences. Biochemistry. 48(10):2063-2074.		Sequences deriving from HCV 3' NTR, mouse Gabrg2 [14406] and Src [20779]		EMSA with recombinant protein
hnRNP I (PTB)	CACUAAGCUCGCUUUCUUGCUGUCC	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	19506027	Millevoi S, Decorsiere A, Loulergue C, Iacovoni J, Bernat S, Antoniou M, Vagner S. (2009) A physical and functional link between splicing factors promotes pre-mRNA 3' end processing. Nucleic Acids Res. 37(14):4672-4683.		Sequences deriving from HBB [3043]		UV cross-linking, immunoprecipitation with HeLa NE and recombinant protein
hnRNP I (PTB)	UCCUCCUCCUUCCCUCUUCCUUGCCCCCUCUUCCCCUAAACCUUACAG	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	20010808	David CJ, Chen M, Assanah M, Canoll P, Manley JL. (2010) HnRNP proteins controlled by c-Myc deregulate pyruvate kinase mRNA splicing in cancer. Nature. 463(7279):364-368.		Sequences deriving from PKM2 [5315]. Construct of PKM2 [5315] EX9 - INT9 - AdML. Construct of PKM2 [5315] EX8 - INT8 - EX9 - INT9 - EX10 - INT10 - EX11.	In vitro splicing with HeLa NE. In vivo splicing in HeLa.	Protein affinity purification, mass spectrometry, UV cross-linking and immunoblotting with HeLa NE. siRNA.
hnRNP I (PTB)	UUUCUCUUUCUCUCCUUUCCUUUUCCUUCUUCUU	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	16431980	Clerte C, Hall KB. (2006) Characterization of multimeric complexes formed by the human PTB1 protein on RNA. RNA. 12(3):457-475.		Sequences deriving from rat Gabrg2 [29709] and HCV 3' NTR		EMSA with recombinant protein. RNA footprinting.
hnRNP I (PTB)	UUCUCUUUUCU	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	16431980	Clerte C, Hall KB. (2006) Characterization of multimeric complexes formed by the human PTB1 protein on RNA. RNA. 12(3):457-475.		Sequences deriving from rat Gabrg2 [29709] and HCV 3' NTR		EMSA with recombinant protein. RNA footprinting.
hnRNP I (PTB)	UAGCUGUG	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	16431980	Clerte C, Hall KB. (2006) Characterization of multimeric complexes formed by the human PTB1 protein on RNA. RNA. 12(3):457-475.		Sequences deriving from rat Gabrg2 [29709] and HCV 3' NTR		EMSA with recombinant protein. RNA footprinting.
hnRNP I (PTB)	CUCCAUCUU	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	16431980	Clerte C, Hall KB. (2006) Characterization of multimeric complexes formed by the human PTB1 protein on RNA. RNA. 12(3):457-475.		Sequences deriving from rat Gabrg2 [29709] and HCV 3' NTR		EMSA with recombinant protein. RNA footprinting.
hnRNP I (PTB)	GGCUAACUUUCUCUUUCUCUCUCCCUCCCUGUCUUUCCCUCUCUCUCUCUUUCCCGC	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	9305981	Perez I, McAfee JG, Patton JG. (1997) Multiple RRMs contribute to RNA binding specificity and affinity for polypyrimidine tract binding protein. Biochemistry. 36(39):11881-11890.		Sequences deriving from rat Tpm1 [24851] and synthesized oligos.		UV cross-linking with HeLa NE and recombinant protein. Fluorescence spectroscopy with recombinant protein.
hnRNP I (PTB)	CCCCCCC	-7	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	9305981	Perez I, McAfee JG, Patton JG. (1997) Multiple RRMs contribute to RNA binding specificity and affinity for polypyrimidine tract binding protein. Biochemistry. 36(39):11881-11890.		Sequences deriving from rat Tpm1 [24851] and synthesized oligos.		UV cross-linking with HeLa NE and recombinant protein. Fluorescence spectroscopy with recombinant protein.
hnRNP I (PTB)	GGGGGGG	-2	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	9305981	Perez I, McAfee JG, Patton JG. (1997) Multiple RRMs contribute to RNA binding specificity and affinity for polypyrimidine tract binding protein. Biochemistry. 36(39):11881-11890.		Sequences deriving from rat Tpm1 [24851] and synthesized oligos.		UV cross-linking with HeLa NE and recombinant protein. Fluorescence spectroscopy with recombinant protein.
hnRNP I (PTB)	CUGAGGCUGGGGGCUGCUCUCUGCAUGUGCUUCCU	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	11571276	Caputi M, Zahler AM. (2001) Determination of the RNA Binding Specificity of the Heterogeneous Nuclear Ribonucleoprotein (hnRNP) H/H'/F/2H9 Family. J Biol Chem. 276(47): 43850-43859.		Synthesized oligos, constructs of Rev-dependent export (p17gag INS), beta-tropomyosin TPM2 [7169], c-src [20779].		RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography.
hnRNP I (PTB)	CUUUCCUUUCAUUCUUUCACUUCUCU	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	11931771	Charlet-B N, Logan P, Singh G, Cooper TA. (2002) Dynamic antagonism between ETR-3 and PTB regulates cell type-specific alternative splicing. Mol Cell. 9(3):649-658.		Construct of cardiac troponin T TNNT2 [7139] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts. In vivo splicing in HeLa.	UV crosslink, western blot, immunoprecipitation in HeLa nuclear extracts.
hnRNP I (PTB)	UCUCUC	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	11931771	Charlet-B N, Logan P, Singh G, Cooper TA. (2002) Dynamic antagonism between ETR-3 and PTB regulates cell type-specific alternative splicing. Mol Cell. 9(3):649-658.		Construct of cardiac troponin T TNNT2 [7139] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts. In vivo splicing in HeLa.	UV crosslink, western blot, immunoprecipitation in HeLa nuclear extracts.
hnRNP I (PTB)	UUCUUU	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	19016857	Raponi M, Buratti E, Llorian M, Stuani C, Smith CW, Baralle D. (2008) Polypyrimidine tract binding protein regulates lternative splicing of an aberrant pseudoexon in NF1. FEBS J. 275(24): 6101-6108.		Construct of NF1 [4763] partialEX30 - INT30 - partialEX31.	In vivo splicing in Hela.	Mutagenesis, Pull down assay and Western blot with HeLa nucelar extract.
hnRNP I (PTB)	UUCUUC	-8	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	19016857	Raponi M, Buratti E, Llorian M, Stuani C, Smith CW, Baralle D. (2008) Polypyrimidine tract binding protein regulates lternative splicing of an aberrant pseudoexon in NF1. FEBS J. 275(24): 6101-6108.		Construct of NF1 [4763] partialEX30 - INT30 - partialEX31.	In vivo splicing in Hela.	Mutagenesis, Pull down assay and Western blot with HeLa nucelar extract.
hnRNP I (PTB)	GUCUUU	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	19016857	Raponi M, Buratti E, Llorian M, Stuani C, Smith CW, Baralle D. (2008) Polypyrimidine tract binding protein regulates lternative splicing of an aberrant pseudoexon in NF1. FEBS J. 275(24): 6101-6108.		Construct of NF1 [4763] partialEX30 - INT30 - partialEX31.	In vivo splicing in Hela.	Mutagenesis, Pull down assay and Western blot with HeLa nucelar extract.
hnRNP I (PTB)	CUCUUC	-10	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	9214659	Perez I, Lin CH, McAfee JG, Patton JG. (1997) Mutation of PTB binding sites causes misregulation of alternative 3' splice site selection in vivo. RNA. 3(7): 764-778.		Constructs of tropomyosin 1 alpha TPM1 [7168] EX1 - INT1 - EX2 - INT2 - EX3 - INT3 - EX4 of WT and mutants for in vivo splicing. Constructs of TPM1 branch point and polypirimidine tract upstream EX3 and synthetised oligo for UV-crosslink. Sequences of 20 nt random for SELEX.	In vivo splicing assay by transfecting constructs into smooth muscle cells (SMC) and HeLa cells.	SELEX of 20nt random with recombinant protein. UV crosslink and SDS-PAGE with HeLa nuclear extract. Equilibrium binding assays with another protein or other RNAs as competitors.
hnRNP I (PTB)	CUCUUA	-7	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	9214659	Perez I, Lin CH, McAfee JG, Patton JG. (1997) Mutation of PTB binding sites causes misregulation of alternative 3' splice site selection in vivo. RNA. 3(7): 764-778.		Constructs of tropomyosin 1 alpha TPM1 [7168] EX1 - INT1 - EX2 - INT2 - EX3 - INT3 - EX4 of WT and mutants for in vivo splicing. Constructs of TPM1 branch point and polypirimidine tract upstream EX3 and synthetised oligo for UV-crosslink. Sequences of 20 nt random for SELEX.	In vivo splicing assay by transfecting constructs into smooth muscle cells (SMC) and HeLa cells.	SELEX of 20nt random with recombinant protein. UV crosslink and SDS-PAGE with HeLa nuclear extract. Equilibrium binding assays with another protein or other RNAs as competitors.
hnRNP I (PTB)	AUCUUC	-7	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	9214659	Perez I, Lin CH, McAfee JG, Patton JG. (1997) Mutation of PTB binding sites causes misregulation of alternative 3' splice site selection in vivo. RNA. 3(7): 764-778.		Constructs of tropomyosin 1 alpha TPM1 [7168] EX1 - INT1 - EX2 - INT2 - EX3 - INT3 - EX4 of WT and mutants for in vivo splicing. Constructs of TPM1 branch point and polypirimidine tract upstream EX3 and synthetised oligo for UV-crosslink. Sequences of 20 nt random for SELEX.	In vivo splicing assay by transfecting constructs into smooth muscle cells (SMC) and HeLa cells.	SELEX of 20nt random with recombinant protein. UV crosslink and SDS-PAGE with HeLa nuclear extract. Equilibrium binding assays with another protein or other RNAs as competitors.
hnRNP I (PTB)	CUCUUU	-7	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	9214659	Perez I, Lin CH, McAfee JG, Patton JG. (1997) Mutation of PTB binding sites causes misregulation of alternative 3' splice site selection in vivo. RNA. 3(7): 764-778.		Constructs of tropomyosin 1 alpha TPM1 [7168] EX1 - INT1 - EX2 - INT2 - EX3 - INT3 - EX4 of WT and mutants for in vivo splicing. Constructs of TPM1 branch point and polypirimidine tract upstream EX3 and synthetised oligo for UV-crosslink. Sequences of 20 nt random for SELEX.	In vivo splicing assay by transfecting constructs into smooth muscle cells (SMC) and HeLa cells.	SELEX of 20nt random with recombinant protein. UV crosslink and SDS-PAGE with HeLa nuclear extract. Equilibrium binding assays with another protein or other RNAs as competitors.
hnRNP I (PTB)	CUCUUG	-4	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	9214659	Perez I, Lin CH, McAfee JG, Patton JG. (1997) Mutation of PTB binding sites causes misregulation of alternative 3' splice site selection in vivo. RNA. 3(7): 764-778.		Constructs of tropomyosin 1 alpha TPM1 [7168] EX1 - INT1 - EX2 - INT2 - EX3 - INT3 - EX4 of WT and mutants for in vivo splicing. Constructs of TPM1 branch point and polypirimidine tract upstream EX3 and synthetised oligo for UV-crosslink. Sequences of 20 nt random for SELEX.	In vivo splicing assay by transfecting constructs into smooth muscle cells (SMC) and HeLa cells.	SELEX of 20nt random with recombinant protein. UV crosslink and SDS-PAGE with HeLa nuclear extract. Equilibrium binding assays with another protein or other RNAs as competitors.
hnRNP I (PTB)	UUCUUG	-4	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	9214659	Perez I, Lin CH, McAfee JG, Patton JG. (1997) Mutation of PTB binding sites causes misregulation of alternative 3' splice site selection in vivo. RNA. 3(7): 764-778.		Constructs of tropomyosin 1 alpha TPM1 [7168] EX1 - INT1 - EX2 - INT2 - EX3 - INT3 - EX4 of WT and mutants for in vivo splicing. Constructs of TPM1 branch point and polypirimidine tract upstream EX3 and synthetised oligo for UV-crosslink. Sequences of 20 nt random for SELEX.	In vivo splicing assay by transfecting constructs into smooth muscle cells (SMC) and HeLa cells.	SELEX of 20nt random with recombinant protein. UV crosslink and SDS-PAGE with HeLa nuclear extract. Equilibrium binding assays with another protein or other RNAs as competitors.
hnRNP I (PTB)	GUCUUA	-4	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	9214659	Perez I, Lin CH, McAfee JG, Patton JG. (1997) Mutation of PTB binding sites causes misregulation of alternative 3' splice site selection in vivo. RNA. 3(7): 764-778.		Constructs of tropomyosin 1 alpha TPM1 [7168] EX1 - INT1 - EX2 - INT2 - EX3 - INT3 - EX4 of WT and mutants for in vivo splicing. Constructs of TPM1 branch point and polypirimidine tract upstream EX3 and synthetised oligo for UV-crosslink. Sequences of 20 nt random for SELEX.	In vivo splicing assay by transfecting constructs into smooth muscle cells (SMC) and HeLa cells.	SELEX of 20nt random with recombinant protein. UV crosslink and SDS-PAGE with HeLa nuclear extract. Equilibrium binding assays with another protein or other RNAs as competitors.
hnRNP I (PTB)	UUCACAUUUCAUUCCCUUGUGUUUCUGUCCC	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	7761834	Singh R, Valcarcel J, Green MR. (1995) Distinct binding specificities and functions of higher eukaryotic polypyrimidine tract-binding proteins. Science. 268(5214):1173-1176.		Sequences of 31nt random for SELEX. Sequence deriving from Ad2 Major Late transcript and D. melanogaster tra [39849].		SELEX of 31nt random and EMSA with recombinant protein.
hnRNP I (PTB)	CUUGACGCCUGGUGCCUCUCUCUGGCCCCCG	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	7761834	Singh R, Valcarcel J, Green MR. (1995) Distinct binding specificities and functions of higher eukaryotic polypyrimidine tract-binding proteins. Science. 268(5214):1173-1176.		Sequences of 31nt random for SELEX. Sequence deriving from Ad2 Major Late transcript and D. melanogaster tra [39849].		SELEX of 31nt random and EMSA with recombinant protein.
hnRNP I (PTB)	UAGCAUCAGCCUGGUGCCUACCUUCGGCCCC	-10	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	7761834	Singh R, Valcarcel J, Green MR. (1995) Distinct binding specificities and functions of higher eukaryotic polypyrimidine tract-binding proteins. Science. 268(5214):1173-1176.		Sequences of 31nt random for SELEX. Sequence deriving from Ad2 Major Late transcript and D. melanogaster tra [39849].		SELEX of 31nt random and EMSA with recombinant protein.
hnRNP I (PTB)	CUUGCUUCACCUGGUGCCUUCCCUUCGGCCC	-10	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	7761834	Singh R, Valcarcel J, Green MR. (1995) Distinct binding specificities and functions of higher eukaryotic polypyrimidine tract-binding proteins. Science. 268(5214):1173-1176.		Sequences of 31nt random for SELEX. Sequence deriving from Ad2 Major Late transcript and D. melanogaster tra [39849].		SELEX of 31nt random and EMSA with recombinant protein.
hnRNP I (PTB)	GCUCCAGCCUGGUGGCACGCUCCUGUCCCCC	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	7761834	Singh R, Valcarcel J, Green MR. (1995) Distinct binding specificities and functions of higher eukaryotic polypyrimidine tract-binding proteins. Science. 268(5214):1173-1176.		Sequences of 31nt random for SELEX. Sequence deriving from Ad2 Major Late transcript and D. melanogaster tra [39849].		SELEX of 31nt random and EMSA with recombinant protein.
hnRNP I (PTB)	AGCUGCAGCCUGGAGCUCCUCUCGUGGCCCC	-10	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	7761834	Singh R, Valcarcel J, Green MR. (1995) Distinct binding specificities and functions of higher eukaryotic polypyrimidine tract-binding proteins. Science. 268(5214):1173-1176.		Sequences of 31nt random for SELEX. Sequence deriving from Ad2 Major Late transcript and D. melanogaster tra [39849].		SELEX of 31nt random and EMSA with recombinant protein.
hnRNP I (PTB)	GGCUCAGCCUGCUGACCCUUCUUCCGUCGCC	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	7761834	Singh R, Valcarcel J, Green MR. (1995) Distinct binding specificities and functions of higher eukaryotic polypyrimidine tract-binding proteins. Science. 268(5214):1173-1176.		Sequences of 31nt random for SELEX. Sequence deriving from Ad2 Major Late transcript and D. melanogaster tra [39849].		SELEX of 31nt random and EMSA with recombinant protein.
hnRNP I (PTB)	AGUGGCUGUCUGAUGCUGCUCUUCCAGCUCC	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	7761834	Singh R, Valcarcel J, Green MR. (1995) Distinct binding specificities and functions of higher eukaryotic polypyrimidine tract-binding proteins. Science. 268(5214):1173-1176.		Sequences of 31nt random for SELEX. Sequence deriving from Ad2 Major Late transcript and D. melanogaster tra [39849].		SELEX of 31nt random and EMSA with recombinant protein.
hnRNP I (PTB)	GGUAGAUGCCUGCAGCCGUUCUUCCGGUGCC	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	7761834	Singh R, Valcarcel J, Green MR. (1995) Distinct binding specificities and functions of higher eukaryotic polypyrimidine tract-binding proteins. Science. 268(5214):1173-1176.		Sequences of 31nt random for SELEX. Sequence deriving from Ad2 Major Late transcript and D. melanogaster tra [39849].		SELEX of 31nt random and EMSA with recombinant protein.
hnRNP I (PTB)	AGCCGCUGUCUGCAGACUUCCCUUCGUCGCC	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	7761834	Singh R, Valcarcel J, Green MR. (1995) Distinct binding specificities and functions of higher eukaryotic polypyrimidine tract-binding proteins. Science. 268(5214):1173-1176.		Sequences of 31nt random for SELEX. Sequence deriving from Ad2 Major Late transcript and D. melanogaster tra [39849].		SELEX of 31nt random and EMSA with recombinant protein.
hnRNP I (PTB)	GCUGUCCUGUCUUCUCCUUCUUUCCUGGUCC	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	7761834	Singh R, Valcarcel J, Green MR. (1995) Distinct binding specificities and functions of higher eukaryotic polypyrimidine tract-binding proteins. Science. 268(5214):1173-1176.		Sequences of 31nt random for SELEX. Sequence deriving from Ad2 Major Late transcript and D. melanogaster tra [39849].		SELEX of 31nt random and EMSA with recombinant protein.
hnRNP I (PTB)	ACUGUCGUCUAUUACUCUGUUCUGUUCUUCC	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	7761834	Singh R, Valcarcel J, Green MR. (1995) Distinct binding specificities and functions of higher eukaryotic polypyrimidine tract-binding proteins. Science. 268(5214):1173-1176.		Sequences of 31nt random for SELEX. Sequence deriving from Ad2 Major Late transcript and D. melanogaster tra [39849].		SELEX of 31nt random and EMSA with recombinant protein.
hnRNP I (PTB)	UUCCGUCUCACUUCUUCUUUCCGCUGUCCCC	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	7761834	Singh R, Valcarcel J, Green MR. (1995) Distinct binding specificities and functions of higher eukaryotic polypyrimidine tract-binding proteins. Science. 268(5214):1173-1176.		Sequences of 31nt random for SELEX. Sequence deriving from Ad2 Major Late transcript and D. melanogaster tra [39849].		SELEX of 31nt random and EMSA with recombinant protein.
hnRNP I (PTB)	UUCCUCUCUUCCUUAUACCGUUCUGUGUGCC	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	7761834	Singh R, Valcarcel J, Green MR. (1995) Distinct binding specificities and functions of higher eukaryotic polypyrimidine tract-binding proteins. Science. 268(5214):1173-1176.		Sequences of 31nt random for SELEX. Sequence deriving from Ad2 Major Late transcript and D. melanogaster tra [39849].		SELEX of 31nt random and EMSA with recombinant protein.
hnRNP I (PTB)	UCUAGCUUUCCUUUCCUCUUCUCUCUUCCCC	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	7761834	Singh R, Valcarcel J, Green MR. (1995) Distinct binding specificities and functions of higher eukaryotic polypyrimidine tract-binding proteins. Science. 268(5214):1173-1176.		Sequences of 31nt random for SELEX. Sequence deriving from Ad2 Major Late transcript and D. melanogaster tra [39849].		SELEX of 31nt random and EMSA with recombinant protein.
hnRNP I (PTB)	UUUUUGUUGUUUUUUUU	-1	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	7761834	Singh R, Valcarcel J, Green MR. (1995) Distinct binding specificities and functions of higher eukaryotic polypyrimidine tract-binding proteins. Science. 268(5214):1173-1176.		Sequences of 31nt random for SELEX. Sequence deriving from Ad2 Major Late transcript and D. melanogaster tra [39849].		SELEX of 31nt random and EMSA with recombinant protein.
hnRNP I (PTB)	CCUCUUU	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	21518792	Lin JC, Tarn WY. (2011) RBM4 down-regulates PTB and antagonizes its activity in muscle cell-specific alternative splicing. J Cell Biol. 193(3):509-520.		Constructs of wt or mutated TPM1 [7168]_EX8 - Ptbp1 [19205]_INT10 - Ptbp1 [19205]_EX11 - Ptbp1 [19205]_INT11 - TPM1 [7168]_ EX9B	In vivo splicing in C2C12 cells overexpressing human recombinant proteins	Mutagenesis, in vivo splicing assay
hnRNP I (PTB)	UUUAGUCAGCCUUAUAGCUAA	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	22434879	Zubovic L, Baralle M, Baralle FE. (2012) Mutually exclusive splicing regulates the Nav 1.6 sodium channel function through a combinatorial mechanism that involves three distinct splicing regulatory elements and their ligands. Nucleic Acids Res. 40(13):6255-6269.		Sequences deriving from SCN8A [6334]. Constructs of wt or mutated SCN8A [6334] EX17 - INT17 - EX18N - INT18 - EX18A - INT18 - EX19	In vivo splicing in HeLa	Pulldown, mass spectrophotometry, western blot and siRNA knockdown with HeLa.
hnRNP I (PTB)	CACUGCAUUCUCACCCGCAAGCA	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	20122404	Motta-Mena LB, Heyd F, Lynch KW. (2010) Context-dependent regulatory mechanism of the splicing factor hnRNP L. Mol Cell. 37(2):223-234.		Constructs of wt or mutated PTPRC [5788] EX3 - INT3 - EX4 - INT4 - EX7 and EX3 - INT3 - EX5 - INT5 - EX7.	In vitro splicing in JSL1 NE	Mutational analysis. EMSA with recombinant proteins or JSL1 NE. Pull-down and western blotting with JSL1 NE.
hnRNP I (PTB)	CCACGCACGCAGACUCGCAGACGCCCUCUGCUGGAACUGACACGCAGACAUUCAGCGGCU	-1	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	20122404	Motta-Mena LB, Heyd F, Lynch KW. (2010) Context-dependent regulatory mechanism of the splicing factor hnRNP L. Mol Cell. 37(2):223-234.		Constructs of wt or mutated PTPRC [5788] EX3 - INT3 - EX4 - INT4 - EX7 and EX3 - INT3 - EX5 - INT5 - EX7.	In vitro splicing in JSL1 NE	Mutational analysis. EMSA with recombinant proteins or JSL1 NE. Pull-down and western blotting with JSL1 NE.
hnRNP I (PTB)	CCACGCACGCAGACUCGCAG	-2	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	20122404	Motta-Mena LB, Heyd F, Lynch KW. (2010) Context-dependent regulatory mechanism of the splicing factor hnRNP L. Mol Cell. 37(2):223-234.		Constructs of wt or mutated PTPRC [5788] EX3 - INT3 - EX4 - INT4 - EX7 and EX3 - INT3 - EX5 - INT5 - EX7.	In vitro splicing in JSL1 NE	Mutational analysis. EMSA with recombinant proteins or JSL1 NE. Pull-down and western blotting with JSL1 NE.
hnRNP I (PTB)	CACGCAGACAUUCAGCGGCU	-2	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	20122404	Motta-Mena LB, Heyd F, Lynch KW. (2010) Context-dependent regulatory mechanism of the splicing factor hnRNP L. Mol Cell. 37(2):223-234.		Constructs of wt or mutated PTPRC [5788] EX3 - INT3 - EX4 - INT4 - EX7 and EX3 - INT3 - EX5 - INT5 - EX7.	In vitro splicing in JSL1 NE	Mutational analysis. EMSA with recombinant proteins or JSL1 NE. Pull-down and western blotting with JSL1 NE.
hnRNP I (PTB)	GCCCAAGGAGGUGAUAGCAUUUUUCAGAGAUUGAAAAGAAUAGUAUUUGAUGCCAAAUCUACAAUUGUG	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	24499931	Han A, Stoilov P, Linares AJ, Zhou Y, Fu XD, Black DL. (2014) De novo prediction of PTBP1 binding and splicing targets reveals unexpected features of its RNA recognition and function. PLoS Comput Biol. 10(1):e1003442.		Sequences deriving from mouse Tmx3 [67988] and Scrib [105782].		EMSA with recombinant protein
hnRNP I (PTB)	GUGAGGGCUCUUUCUUCGUGGGACCGUAGAUAGGUAGCUGCUGCUGGUCUCACACUGUUCUCCCUACAG	-10	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	24499931	Han A, Stoilov P, Linares AJ, Zhou Y, Fu XD, Black DL. (2014) De novo prediction of PTBP1 binding and splicing targets reveals unexpected features of its RNA recognition and function. PLoS Comput Biol. 10(1):e1003442.		Sequences deriving from mouse Tmx3 [67988] and Scrib [105782].		EMSA with recombinant protein
hnRNP I (PTB)	GGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCC	-6	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP I (PTB)	AAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACC	-4	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP I (PTB)	UCCCUUUUUUUUCCACCC	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	2533575	Garcia-Blanco MA, Jamison SF, Sharp PA. (1989) Identification and purification of a 62,000-dalton protein that binds specifically to the polypyrimidine tract of introns. Genes Dev. 3(12A):1874-1886.		Synthesized sequences		UV cross-linking, immunoprecipitation in HeLa
hnRNP I (PTB)	UCCCUCCCUCCCUCCACAG	-5	Gene Name and Synonymous: PTBP1, polypyrimidine tract binding protein 1, PTB, PTB2, PTB3, PTB4, pPTB, PTB-1, PTB-T, MGC8461, MGC10830, HNRPI, HNRNPI, HNRNP-I. In the context of CALCA gene, PTB enhances exon 4 inclusion (PMID:9858533). nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	2533575	Garcia-Blanco MA, Jamison SF, Sharp PA. (1989) Identification and purification of a 62,000-dalton protein that binds specifically to the polypyrimidine tract of introns. Genes Dev. 3(12A):1874-1886.		Synthesized sequences		UV cross-linking, immunoprecipitation in HeLa
hnRNP J	CCCCCCC	-7	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 Isoform: isoform J is due to Alternative Splicing.	3386636	Swanson MS, Dreyfuss G. (1988) Classification and purification of proteins of heterogeneous nuclear ribonucleoprotein particles by RNA-binding specificities. Mol Cell Biol. 8(5):2237-2241.		homopolymers		Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract.
hnRNP K	CCCCCCC	-7	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	3386636	Swanson MS, Dreyfuss G. (1988) Classification and purification of proteins of heterogeneous nuclear ribonucleoprotein particles by RNA-binding specificities. Mol Cell Biol. 8(5):2237-2241.		homopolymers		Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract.
hnRNP K	GGGGGGG	-4	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	7607214	Leffers H, Dejgaard K, Celis JE. (1995) Characterisation of two major cellular poly(rC)-binding human proteins, each containing three K-homologous (KH) domains. Eur J Biochem. 230(2): 447-453.	hnRNP E1 has no affinity to poly(rA). hnRNP E2 and hnRNP K have no affinity to poly(rA) and poly(rU).	homopolymers		Western blot of AMA (human amnion) cell extracts and homoribopolymers. Western blot of recombinant proteins and homoribopolymers.
hnRNP K	CACUGCAUUCUCACCCGCAAGCA	-5	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	17664280	Melton AA, Jackson J, Wang J, Lynch KW. (2007) Combinatorial control of signal-induced exon repression by hnRNP L and PSF. Mol Cell Biol. 27(19): 6972-6984.	In this context, hnRNP K, hnRNP D, hnRNP A1, hnRNP A2/B1 do no bind CACUGGAUUCUCACCGGAAGUA and hnRNP A1, hnRNP A2/B1 do no bind CACUGCAUUCUCACCGCAAGCA.	Synthesized sequences. Construct CD45 [PTPRC, 5788] EX3 - INT - EX4 - INT - EX7.	In vitro splicing in JSL1 nuclear extract.	Western blotting analysis of direct RNA affinity purifications of JSL1 nuclear extract.
hnRNP K	CCCCACCCUCUUCCCCAAGCCCCACCCUCUUCCCCAAG	-8	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	9160751	Ostareck DH, Ostareck-Lederer A, Wilm M, Thiele BJ, Mann M, Hentze MW. (1997) mRNA silencing in erythroid differentiation: hnRNP K and hnRNP E1 regulate 15-lipoxygenase translation from the 3' end. Cell. 16		Constructs of luciferase gene reporter.	In vivo splicing assay with luciferase gene reporter in HeLa	UV cross-linking. Cell-free translation of different mRNAs.
hnRNP K	ACCCAA	-1	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	11278705	Thisted T, Lyakhov DL, Liebhaber SA. (2001) Optimized RNA targets of two closely related triple KH domain proteins, heterogeneous nuclear ribonucleoprotein K and alphaCP-2KL, suggest Distinct modes of RNA recognition. J Biol Chem. 276(20):17484-17496.		Sequences of 50nt random for SELEX.		SELEX of random 50nt with recombinant protein.
hnRNP K	ACCCAU	-1	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	11278705	Thisted T, Lyakhov DL, Liebhaber SA. (2001) Optimized RNA targets of two closely related triple KH domain proteins, heterogeneous nuclear ribonucleoprotein K and alphaCP-2KL, suggest Distinct modes of RNA recognition. J Biol Chem. 276(20):17484-17496.		Sequences of 50nt random for SELEX.		SELEX of random 50nt with recombinant protein.
hnRNP K	ACCCCAA	-1	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	11278705	Thisted T, Lyakhov DL, Liebhaber SA. (2001) Optimized RNA targets of two closely related triple KH domain proteins, heterogeneous nuclear ribonucleoprotein K and alphaCP-2KL, suggest Distinct modes of RNA recognition. J Biol Chem. 276(20):17484-17496.		Sequences of 50nt random for SELEX.		SELEX of random 50nt with recombinant protein.
hnRNP K	ACCCCCAA	-2	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	11278705	Thisted T, Lyakhov DL, Liebhaber SA. (2001) Optimized RNA targets of two closely related triple KH domain proteins, heterogeneous nuclear ribonucleoprotein K and alphaCP-2KL, suggest Distinct modes of RNA recognition. J Biol Chem. 276(20):17484-17496.		Sequences of 50nt random for SELEX.		SELEX of random 50nt with recombinant protein.
hnRNP K	ACCCCCAC	-1	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	11278705	Thisted T, Lyakhov DL, Liebhaber SA. (2001) Optimized RNA targets of two closely related triple KH domain proteins, heterogeneous nuclear ribonucleoprotein K and alphaCP-2KL, suggest Distinct modes of RNA recognition. J Biol Chem. 276(20):17484-17496.		Sequences of 50nt random for SELEX.		SELEX of random 50nt with recombinant protein.
hnRNP K	ACCCCCCCCCUA	-1	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	11278705	Thisted T, Lyakhov DL, Liebhaber SA. (2001) Optimized RNA targets of two closely related triple KH domain proteins, heterogeneous nuclear ribonucleoprotein K and alphaCP-2KL, suggest Distinct modes of RNA recognition. J Biol Chem. 276(20):17484-17496.		Sequences of 50nt random for SELEX.		SELEX of random 50nt with recombinant protein.
hnRNP K	ACCCGA	-1	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	11278705	Thisted T, Lyakhov DL, Liebhaber SA. (2001) Optimized RNA targets of two closely related triple KH domain proteins, heterogeneous nuclear ribonucleoprotein K and alphaCP-2KL, suggest Distinct modes of RNA recognition. J Biol Chem. 276(20):17484-17496.		Sequences of 50nt random for SELEX.		SELEX of random 50nt with recombinant protein.
hnRNP K	ACCCGC	-1	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	11278705	Thisted T, Lyakhov DL, Liebhaber SA. (2001) Optimized RNA targets of two closely related triple KH domain proteins, heterogeneous nuclear ribonucleoprotein K and alphaCP-2KL, suggest Distinct modes of RNA recognition. J Biol Chem. 276(20):17484-17496.		Sequences of 50nt random for SELEX.		SELEX of random 50nt with recombinant protein.
hnRNP K	ACCCGU	-1	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	11278705	Thisted T, Lyakhov DL, Liebhaber SA. (2001) Optimized RNA targets of two closely related triple KH domain proteins, heterogeneous nuclear ribonucleoprotein K and alphaCP-2KL, suggest Distinct modes of RNA recognition. J Biol Chem. 276(20):17484-17496.		Sequences of 50nt random for SELEX.		SELEX of random 50nt with recombinant protein.
hnRNP K	ACCCUU	-1	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	11278705	Thisted T, Lyakhov DL, Liebhaber SA. (2001) Optimized RNA targets of two closely related triple KH domain proteins, heterogeneous nuclear ribonucleoprotein K and alphaCP-2KL, suggest Distinct modes of RNA recognition. J Biol Chem. 276(20):17484-17496.		Sequences of 50nt random for SELEX.		SELEX of random 50nt with recombinant protein.
hnRNP K	GCCCAA	-2	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	11278705	Thisted T, Lyakhov DL, Liebhaber SA. (2001) Optimized RNA targets of two closely related triple KH domain proteins, heterogeneous nuclear ribonucleoprotein K and alphaCP-2KL, suggest Distinct modes of RNA recognition. J Biol Chem. 276(20):17484-17496.		Sequences of 50nt random for SELEX.		SELEX of random 50nt with recombinant protein.
hnRNP K	GCCCAC	-2	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	11278705	Thisted T, Lyakhov DL, Liebhaber SA. (2001) Optimized RNA targets of two closely related triple KH domain proteins, heterogeneous nuclear ribonucleoprotein K and alphaCP-2KL, suggest Distinct modes of RNA recognition. J Biol Chem. 276(20):17484-17496.		Sequences of 50nt random for SELEX.		SELEX of random 50nt with recombinant protein.
hnRNP K	GCCCAG	-2	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	11278705	Thisted T, Lyakhov DL, Liebhaber SA. (2001) Optimized RNA targets of two closely related triple KH domain proteins, heterogeneous nuclear ribonucleoprotein K and alphaCP-2KL, suggest Distinct modes of RNA recognition. J Biol Chem. 276(20):17484-17496.		Sequences of 50nt random for SELEX.		SELEX of random 50nt with recombinant protein.
hnRNP K	GCCCCCCUA	-1	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	11278705	Thisted T, Lyakhov DL, Liebhaber SA. (2001) Optimized RNA targets of two closely related triple KH domain proteins, heterogeneous nuclear ribonucleoprotein K and alphaCP-2KL, suggest Distinct modes of RNA recognition. J Biol Chem. 276(20):17484-17496.		Sequences of 50nt random for SELEX.		SELEX of random 50nt with recombinant protein.
hnRNP K	GCCCCUA	-4	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	11278705	Thisted T, Lyakhov DL, Liebhaber SA. (2001) Optimized RNA targets of two closely related triple KH domain proteins, heterogeneous nuclear ribonucleoprotein K and alphaCP-2KL, suggest Distinct modes of RNA recognition. J Biol Chem. 276(20):17484-17496.		Sequences of 50nt random for SELEX.		SELEX of random 50nt with recombinant protein.
hnRNP K	UCCCAA	-5	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	11278705	Thisted T, Lyakhov DL, Liebhaber SA. (2001) Optimized RNA targets of two closely related triple KH domain proteins, heterogeneous nuclear ribonucleoprotein K and alphaCP-2KL, suggest Distinct modes of RNA recognition. J Biol Chem. 276(20):17484-17496.		Sequences of 50nt random for SELEX.		SELEX of random 50nt with recombinant protein.
hnRNP K	UCCCAC	-1	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	11278705	Thisted T, Lyakhov DL, Liebhaber SA. (2001) Optimized RNA targets of two closely related triple KH domain proteins, heterogeneous nuclear ribonucleoprotein K and alphaCP-2KL, suggest Distinct modes of RNA recognition. J Biol Chem. 276(20):17484-17496.		Sequences of 50nt random for SELEX.		SELEX of random 50nt with recombinant protein.
hnRNP K	UCCCAU	-2	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	11278705	Thisted T, Lyakhov DL, Liebhaber SA. (2001) Optimized RNA targets of two closely related triple KH domain proteins, heterogeneous nuclear ribonucleoprotein K and alphaCP-2KL, suggest Distinct modes of RNA recognition. J Biol Chem. 276(20):17484-17496.		Sequences of 50nt random for SELEX.		SELEX of random 50nt with recombinant protein.
hnRNP K	UCCCCAA	-1	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	11278705	Thisted T, Lyakhov DL, Liebhaber SA. (2001) Optimized RNA targets of two closely related triple KH domain proteins, heterogeneous nuclear ribonucleoprotein K and alphaCP-2KL, suggest Distinct modes of RNA recognition. J Biol Chem. 276(20):17484-17496.		Sequences of 50nt random for SELEX.		SELEX of random 50nt with recombinant protein.
hnRNP K	UCCCCAU	-1	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	11278705	Thisted T, Lyakhov DL, Liebhaber SA. (2001) Optimized RNA targets of two closely related triple KH domain proteins, heterogeneous nuclear ribonucleoprotein K and alphaCP-2KL, suggest Distinct modes of RNA recognition. J Biol Chem. 276(20):17484-17496.		Sequences of 50nt random for SELEX.		SELEX of random 50nt with recombinant protein.
hnRNP K	UCCCCCAU	-1	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	11278705	Thisted T, Lyakhov DL, Liebhaber SA. (2001) Optimized RNA targets of two closely related triple KH domain proteins, heterogeneous nuclear ribonucleoprotein K and alphaCP-2KL, suggest Distinct modes of RNA recognition. J Biol Chem. 276(20):17484-17496.		Sequences of 50nt random for SELEX.		SELEX of random 50nt with recombinant protein.
hnRNP K	UCCCCUA	-1	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	11278705	Thisted T, Lyakhov DL, Liebhaber SA. (2001) Optimized RNA targets of two closely related triple KH domain proteins, heterogeneous nuclear ribonucleoprotein K and alphaCP-2KL, suggest Distinct modes of RNA recognition. J Biol Chem. 276(20):17484-17496.		Sequences of 50nt random for SELEX.		SELEX of random 50nt with recombinant protein.
hnRNP K	UCCCCUU	-1	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	11278705	Thisted T, Lyakhov DL, Liebhaber SA. (2001) Optimized RNA targets of two closely related triple KH domain proteins, heterogeneous nuclear ribonucleoprotein K and alphaCP-2KL, suggest Distinct modes of RNA recognition. J Biol Chem. 276(20):17484-17496.		Sequences of 50nt random for SELEX.		SELEX of random 50nt with recombinant protein.
hnRNP K	UCCCGA	-1	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	11278705	Thisted T, Lyakhov DL, Liebhaber SA. (2001) Optimized RNA targets of two closely related triple KH domain proteins, heterogeneous nuclear ribonucleoprotein K and alphaCP-2KL, suggest Distinct modes of RNA recognition. J Biol Chem. 276(20):17484-17496.		Sequences of 50nt random for SELEX.		SELEX of random 50nt with recombinant protein.
hnRNP K	UCCCUA	-10	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	11278705	Thisted T, Lyakhov DL, Liebhaber SA. (2001) Optimized RNA targets of two closely related triple KH domain proteins, heterogeneous nuclear ribonucleoprotein K and alphaCP-2KL, suggest Distinct modes of RNA recognition. J Biol Chem. 276(20):17484-17496.		Sequences of 50nt random for SELEX.		SELEX of random 50nt with recombinant protein.
hnRNP K	UCCCUU	-1	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	11278705	Thisted T, Lyakhov DL, Liebhaber SA. (2001) Optimized RNA targets of two closely related triple KH domain proteins, heterogeneous nuclear ribonucleoprotein K and alphaCP-2KL, suggest Distinct modes of RNA recognition. J Biol Chem. 276(20):17484-17496.		Sequences of 50nt random for SELEX.		SELEX of random 50nt with recombinant protein.
hnRNP K	CCCCCUCUCUCUAUCGCUGUCUCUUGAGCCACGC	-5	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	11867641	Expert-Bezancon A, Le Caer JP, Marie J. (2002) Heterogeneous nuclear ribonucleoprotein (hnRNP) K is a component of an intronic splicing enhancer complex that activates the splicing of the alternative exon 6A from chicken beta-tropomyosin pre-mRNA. J Biol Chem. 277(19):16614-16623.		Synthesized sequences. Construct of chicken TPM3 [396430] EX6A - INT6 - EX7	In vitro splicing in HeLa NE	Protein affinity purification with HeLa NE. Mass spectrometry and Western blots. Two-dimensional gel analysis.
hnRNP K	CAGCCACCUCUCCCCUCUCCGCACUGCUGCCA	-5	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	11867641	Expert-Bezancon A, Le Caer JP, Marie J. (2002) Heterogeneous nuclear ribonucleoprotein (hnRNP) K is a component of an intronic splicing enhancer complex that activates the splicing of the alternative exon 6A from chicken beta-tropomyosin pre-mRNA. J Biol Chem. 277(19):16614-16623.		Synthesized sequences. Construct of chicken TPM3 [396430] EX6A - INT6 - EX7	In vitro splicing in HeLa NE	Protein affinity purification with HeLa NE. Mass spectrometry and Western blots. Two-dimensional gel analysis.
hnRNP K	UACCACCACCCCUUCCCCAUUCCCUUGCCCUGCU	-5	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	11867641	Expert-Bezancon A, Le Caer JP, Marie J. (2002) Heterogeneous nuclear ribonucleoprotein (hnRNP) K is a component of an intronic splicing enhancer complex that activates the splicing of the alternative exon 6A from chicken beta-tropomyosin pre-mRNA. J Biol Chem. 277(19):16614-16623.		Synthesized sequences. Construct of chicken TPM3 [396430] EX6A - INT6 - EX7	In vitro splicing in HeLa NE	Protein affinity purification with HeLa NE. Mass spectrometry and Western blots. Two-dimensional gel analysis.
hnRNP K	CUUUCUCUUUCUCUCUCCCUCCCUGUCUUUCCCU	-5	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	11867641	Expert-Bezancon A, Le Caer JP, Marie J. (2002) Heterogeneous nuclear ribonucleoprotein (hnRNP) K is a component of an intronic splicing enhancer complex that activates the splicing of the alternative exon 6A from chicken beta-tropomyosin pre-mRNA. J Biol Chem. 277(19):16614-16623.		Synthesized sequences. Construct of chicken TPM3 [396430] EX6A - INT6 - EX7	In vitro splicing in HeLa NE	Protein affinity purification with HeLa NE. Mass spectrometry and Western blots. Two-dimensional gel analysis.
hnRNP K	CCCUCUGCCACCCAGGCAGGCCCUGCCUUCAGCCCUGGCCCAGAGCUGGAACACUCUCUGAGAUGCCCCUCUGCCUGGGCUUAUGCCCUCAGAUGGAGACAUUGGAUGUGGAGCUCCUGCUGGAUGCGUGCCCUGACCCCUGCACCAGCCCUUCCCUGCUUUGAG	-5	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	12600897	Skalweit A, Doller A, Huth A, Kahne T, Persson PB, Thiele BJ. (2003) Posttranscriptional control of renin synthesis: identification of proteins interacting with renin mRNA 3'-untranslated region. Circ Res. 92(4):419-427.		Sequences deriving from REN [5972]		EMSA, UV cross-linking with Calu-6 cell extracts. RNA-affinity chromatography with MALDI-TOF-MS. Western blot.
hnRNP K	UCCCCCCAA	-10	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	15514164	Thiele BJ, Doller A, Kahne T, Pregla R, Hetzer R, Regitz-Zagrosek V. (2004) RNA-binding proteins heterogeneous nuclear ribonucleoprotein A1, E1, and K are involved in post-transcriptional control of collagen I and III synthesis. Circ Res. 95(11):1058-1066.		Sequences deriving from COL1A1 [1277], COL1A2 [1278], COL3A1 [1281]		EMSA, UV cross-linking and immunoprecipitation with HT1080 cytoplasmic extracts or recombinant protein. MALDI-TOF.
hnRNP K	UCCCCCAA	-10	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	15514164	Thiele BJ, Doller A, Kahne T, Pregla R, Hetzer R, Regitz-Zagrosek V. (2004) RNA-binding proteins heterogeneous nuclear ribonucleoprotein A1, E1, and K are involved in post-transcriptional control of collagen I and III synthesis. Circ Res. 95(11):1058-1066.		Sequences deriving from COL1A1 [1277], COL1A2 [1278], COL3A1 [1281]		EMSA, UV cross-linking and immunoprecipitation with HT1080 cytoplasmic extracts or recombinant protein. MALDI-TOF.
hnRNP K	AAAAAAA	-4	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	8917439	Dejgaard K, Leffers H. (1996) Characterisation of the nucleic-acid-binding activity of KH domains. Different properties of different domains. Eur J Biochem. 241(2):425-431.		Synthesized oligos		Homopolymer binding assay with recombinant protein.
hnRNP K	UUUUUUU	-2	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	8917439	Dejgaard K, Leffers H. (1996) Characterisation of the nucleic-acid-binding activity of KH domains. Different properties of different domains. Eur J Biochem. 241(2):425-431.		Synthesized oligos		Homopolymer binding assay with recombinant protein.
hnRNP K	AGCCACCUCCCACCCCACCCCA	-5	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	17928403	Lee PT, Liao PC, Chang WC, Tseng JT. (2007) Epidermal growth factor increases the interaction between nucleolin and heterogeneous nuclear ribonucleoprotein K/poly(C) binding protein 1 complex to regulate the gastrin mRNA turnover. Mol Biol Cell. 18(12):5004-5013.		Sequences deriving from mutated GAST [2520] and homopolymers.		EMSA, UV cross-linking, competition assays, western blot, pull-down assay and mass spectrometry with AGS cytoplasmic extracts.
hnRNP K	CCCAGCCCUGUCCCCUGAAAAACUGA	-5	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	17928403	Lee PT, Liao PC, Chang WC, Tseng JT. (2007) Epidermal growth factor increases the interaction between nucleolin and heterogeneous nuclear ribonucleoprotein K/poly(C) binding protein 1 complex to regulate the gastrin mRNA turnover. Mol Biol Cell. 18(12):5004-5013.		Sequences deriving from mutated GAST [2520] and homopolymers.		EMSA, UV cross-linking, competition assays, western blot, pull-down assay and mass spectrometry with AGS cytoplasmic extracts.
hnRNP K	CCCAGAAAUGUCCCCUGAAAAACUGA	-5	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	17928403	Lee PT, Liao PC, Chang WC, Tseng JT. (2007) Epidermal growth factor increases the interaction between nucleolin and heterogeneous nuclear ribonucleoprotein K/poly(C) binding protein 1 complex to regulate the gastrin mRNA turnover. Mol Biol Cell. 18(12):5004-5013.		Sequences deriving from mutated GAST [2520] and homopolymers.		EMSA, UV cross-linking, competition assays, western blot, pull-down assay and mass spectrometry with AGS cytoplasmic extracts.
hnRNP K	AAAAGCCCUGUCAAAUGAAAAACUGA	-1	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	17928403	Lee PT, Liao PC, Chang WC, Tseng JT. (2007) Epidermal growth factor increases the interaction between nucleolin and heterogeneous nuclear ribonucleoprotein K/poly(C) binding protein 1 complex to regulate the gastrin mRNA turnover. Mol Biol Cell. 18(12):5004-5013.		Sequences deriving from mutated GAST [2520] and homopolymers.		EMSA, UV cross-linking, competition assays, western blot, pull-down assay and mass spectrometry with AGS cytoplasmic extracts.
hnRNP K	GGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCC	-10	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP K	AAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACC	-1	Gene Name and Synonymous: HNRNPK, heterogeneous nuclear ribonucleoprotein K, CSBP, TUNP, HNRPK, FLJ41122 hnRNP K carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9218800).	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP L	CACACCACAACGGCACCACA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	ACACACACCCACACCUCGGC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	CACCCACCCACAUACAUACAU	-10	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	9880507	Shih SC, Claffey KP. (1999) Regulation of human vascular endothelial growth factor mRNA stability in hypoxia by heterogeneous nuclear ribonucleoprotein L. J Biol Chem. 274(3): 1359-1365.		Sequence of partial VEGFC [7424] 3'UTR		UV crosslink with M21 cell cytoplasmic extracts. Western blot, immunoprecipitation, antisense RNAs.
hnRNP L	CACCCCAAACAACAACCACA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	UGCAAAUGAAAUGACUACAC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	CCUACAUCACUACAUUCACA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	AUGCAGCCCUCGUCAUUGGC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	AGGCAAUACGCACACCACAC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	CACACACACAGACAGACACACACACACACA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	19298794	Lee DH, Lim MH, Youn DY, Jung SE, Ahn YS, Tsujimoto Y, Lee JH. (2009) hnRNP L binds to CA repeats in the 3'UTR of bcl-2 mRNA. Biochem Biophys Res Commun. 382(3): 583-587.		Synthesized sequences.		UV cross-linking assay and super-shift R-EMSA in MCF-7 cytoplasmic extract.
hnRNP L	CACACACACACACACACACACACACACACACACACACA	-2	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	12447348	Hui J, Stangl K, Lane WS, Bindereif A. (2003) HnRNP L stimulates splicing of the eNOS gene by binding to variable-length CA repeats. Nat Struct Biol. 10(1): 33-37.	In this context, CA repeats act as an unusual intronic splicing enhancer, whose activity depends on the CA repeat number.	Construct of eNOS [NOS3, 4846] EX14 - INT14 - EX15 without CA-repeats or with 19, 32, 38 CA-repeats in INT14. Synthesized sequences.	In vitro splicing in HeLa nuclear extract. In vivo splicing in HeLa, HEK293 and HUVEC cells. In vitro splicing in hnRNP L-depleted HeLa nuclear extract and complementation.	UV crosslinking in HeLa nuclear extract, affinity purification and mass-spectrometry analysis.
hnRNP L	CACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	12447348	Hui J, Stangl K, Lane WS, Bindereif A. (2003) HnRNP L stimulates splicing of the eNOS gene by binding to variable-length CA repeats. Nat Struct Biol. 10(1): 33-37.	In this context, CA repeats act as an unusual intronic splicing enhancer, whose activity depends on the CA repeat number.	Construct of eNOS [NOS3, 4846] EX14 - INT14 - EX15 without CA-repeats or with 19, 32, 38 CA-repeats in INT14. Synthesized sequences.	In vitro splicing in HeLa nuclear extract. In vivo splicing in HeLa, HEK293 and HUVEC cells. In vitro splicing in hnRNP L-depleted HeLa nuclear extract and complementation.	UV crosslinking in HeLa nuclear extract, affinity purification and mass-spectrometry analysis.
hnRNP L	CACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACA	-8	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	12447348	Hui J, Stangl K, Lane WS, Bindereif A. (2003) HnRNP L stimulates splicing of the eNOS gene by binding to variable-length CA repeats. Nat Struct Biol. 10(1): 33-37.	In this context, CA repeats act as an unusual intronic splicing enhancer, whose activity depends on the CA repeat number.	Construct of eNOS [NOS3, 4846] EX14 - INT14 - EX15 without CA-repeats or with 19, 32, 38 CA-repeats in INT14. Synthesized sequences.	In vitro splicing in HeLa nuclear extract. In vivo splicing in HeLa, HEK293 and HUVEC cells. In vitro splicing in hnRNP L-depleted HeLa nuclear extract and complementation.	UV crosslinking in HeLa nuclear extract, affinity purification and mass-spectrometry analysis.
hnRNP L	UCCACUUUCAAGUGACCCCUUACCUACUCACACCACUGCAUUCUCACCCGCAAGCACCUU	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	16001081	Rothrock CR, House AE, Lynch KW. (2005) HnRNP L represses exon splicing via a regulated exonic splicing silencer. EMBO J. 24(15): 2792-2802.	In this context, hnRNP L does not bind to CACUGGAUUCUCACCCGGAAGUA motif.	Synthesized sequences.		RNA affinity purification, mass spectrometry, immunblotting, UV-crosslink in JSL1 nuclear extract.
hnRNP L	CACUGGAUUCUCACCCGGAAGUA	-2	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	17664280	Melton AA, Jackson J, Wang J, Lynch KW. (2007) Combinatorial control of signal-induced exon repression by hnRNP L and PSF. Mol Cell Biol. 27(19): 6972-6984.	In this context, hnRNP K, hnRNP D, hnRNP A1, hnRNP A2/B1 do no bind CACUGGAUUCUCACCGGAAGUA and hnRNP A1, hnRNP A2/B1 do no bind CACUGCAUUCUCACCGCAAGCA.	Synthesized sequences. Construct CD45 [PTPRC, 5788] EX3 - INT - EX4 - INT - EX7.	In vitro splicing in JSL1 nuclear extract.	Western blotting analysis of direct RNA affinity purifications of JSL1 nuclear extract.
hnRNP L	GACACACACGCCUGACUCAC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	UCCACUUUCAAGUGACCCCUUACCUACUCACACCACUGGAUUCUCACCCGGAAGUACCUU	-2	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	17664280	Melton AA, Jackson J, Wang J, Lynch KW. (2007) Combinatorial control of signal-induced exon repression by hnRNP L and PSF. Mol Cell Biol. 27(19): 6972-6984.	In this context, hnRNP K, hnRNP D, hnRNP A1, hnRNP A2/B1 do no bind CACUGGAUUCUCACCGGAAGUA and hnRNP A1, hnRNP A2/B1 do no bind CACUGCAUUCUCACCGCAAGCA.	Synthesized sequences. Construct CD45 [PTPRC, 5788] EX3 - INT - EX4 - INT - EX7.	In vitro splicing in JSL1 nuclear extract.	Western blotting analysis of direct RNA affinity purifications of JSL1 nuclear extract.
hnRNP L	CACUGCAUUCUCACCCGCAAGCA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	17664280	Melton AA, Jackson J, Wang J, Lynch KW. (2007) Combinatorial control of signal-induced exon repression by hnRNP L and PSF. Mol Cell Biol. 27(19): 6972-6984.	In this context, hnRNP K, hnRNP D, hnRNP A1, hnRNP A2/B1 do no bind CACUGGAUUCUCACCGGAAGUA and hnRNP A1, hnRNP A2/B1 do no bind CACUGCAUUCUCACCGCAAGCA.	Synthesized sequences. Construct CD45 [PTPRC, 5788] EX3 - INT - EX4 - INT - EX7.	In vitro splicing in JSL1 nuclear extract.	Western blotting analysis of direct RNA affinity purifications of JSL1 nuclear extract.
hnRNP L	CACUGCAGUGUCACCCGCAAGCA	-2	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	18719244	Topp JD, Jackson J, Melton AA, Lynch KW. (2008) A cell-based screen for splicing regulators identifies hnRNP LL as a distinct signal-induced repressor of CD45 variable exon 4. RNA. 14(10): 2038-2049.		Synthesized sequences. Construct CD45 [PTPRC, 5788] EX3 - INT - EX4 - INT - EX7.	In vivo splicing in JSL1 cells.	UV cross-linking and immunoprecipitation in JSL1 nuclear extract.
hnRNP L	CACUGCUUUCUCACCCGCUAGCG	-2	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	18719244	Topp JD, Jackson J, Melton AA, Lynch KW. (2008) A cell-based screen for splicing regulators identifies hnRNP LL as a distinct signal-induced repressor of CD45 variable exon 4. RNA. 14(10): 2038-2049.		Synthesized sequences. Construct CD45 [PTPRC, 5788] EX3 - INT - EX4 - INT - EX7.	In vivo splicing in JSL1 cells.	UV cross-linking and immunoprecipitation in JSL1 nuclear extract.
hnRNP L	CCCCCUCUCUCUAUCGCUGUCUCUUGAGCCACGC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	11867641	Expert-Bezancon A, Le Caer JP, Marie J. (2002) Heterogeneous nuclear ribonucleoprotein (hnRNP) K is a component of an intronic splicing enhancer complex that activates the splicing of the alternative exon 6A from chicken beta-tropomyosin pre-mRNA. J Biol Chem. 277(19):16614-16623.		Synthesized sequences. Construct of chicken TPM3 [396430] EX6A - INT6 - EX7	In vitro splicing in HeLa NE	Protein affinity purification with HeLa NE. Mass spectrometry and Western blots. Two-dimensional gel analysis.
hnRNP L	CAGCCACCUCUCCCCUCUCCGCACUGCUGCCA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	11867641	Expert-Bezancon A, Le Caer JP, Marie J. (2002) Heterogeneous nuclear ribonucleoprotein (hnRNP) K is a component of an intronic splicing enhancer complex that activates the splicing of the alternative exon 6A from chicken beta-tropomyosin pre-mRNA. J Biol Chem. 277(19):16614-16623.		Synthesized sequences. Construct of chicken TPM3 [396430] EX6A - INT6 - EX7	In vitro splicing in HeLa NE	Protein affinity purification with HeLa NE. Mass spectrometry and Western blots. Two-dimensional gel analysis.
hnRNP L	UACCACCACCCCUUCCCCAUUCCCUUGCCCUGCU	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	11867641	Expert-Bezancon A, Le Caer JP, Marie J. (2002) Heterogeneous nuclear ribonucleoprotein (hnRNP) K is a component of an intronic splicing enhancer complex that activates the splicing of the alternative exon 6A from chicken beta-tropomyosin pre-mRNA. J Biol Chem. 277(19):16614-16623.		Synthesized sequences. Construct of chicken TPM3 [396430] EX6A - INT6 - EX7	In vitro splicing in HeLa NE	Protein affinity purification with HeLa NE. Mass spectrometry and Western blots. Two-dimensional gel analysis.
hnRNP L	CUUUCUCUUUCUCUCUCCCUCCCUGUCUUUCCCU	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	11867641	Expert-Bezancon A, Le Caer JP, Marie J. (2002) Heterogeneous nuclear ribonucleoprotein (hnRNP) K is a component of an intronic splicing enhancer complex that activates the splicing of the alternative exon 6A from chicken beta-tropomyosin pre-mRNA. J Biol Chem. 277(19):16614-16623.		Synthesized sequences. Construct of chicken TPM3 [396430] EX6A - INT6 - EX7	In vitro splicing in HeLa NE	Protein affinity purification with HeLa NE. Mass spectrometry and Western blots. Two-dimensional gel analysis.
hnRNP L	CGAGAGCGUCGGUAUUAAGCGGGGGAGAAUUAGAUAAAUG	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP L	CGAGAGCGUCGGUAUUAAGCGGAUCCGAAUUAGAUAAAUG	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
hnRNP L	CAGAAGGGGAGGGGUUCCA	-6	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	17567613	Wang E, Dimova N, Cambi F. (2007) PLP/DM20 ratio is regulated by hnRNPH and F and a novel G-rich enhancer in oligodendrocytes. Nucleic Acids Res. 35(12):4164-4178.		Sequences deriving from PLP1 [5354]. Constructs of PLP1 [5354] INT3 - EX3A - E3B - INT4.	In vivo splicing in oligodendroglial precursors.	RNA-affinity precipitations of oligodendroglial precursor NE, mass spectroscopy, western blot. siRNA
hnRNP L	AACAAGGGGUGGGGGAAAA	-6	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	17567613	Wang E, Dimova N, Cambi F. (2007) PLP/DM20 ratio is regulated by hnRNPH and F and a novel G-rich enhancer in oligodendrocytes. Nucleic Acids Res. 35(12):4164-4178.		Sequences deriving from PLP1 [5354]. Constructs of PLP1 [5354] INT3 - EX3A - E3B - INT4.	In vivo splicing in oligodendroglial precursors.	RNA-affinity precipitations of oligodendroglial precursor NE, mass spectroscopy, western blot. siRNA
hnRNP L	CUGCACCACCACCUGGUUC	-3	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	18945760	Jia R, Liu X, Tao M, Kruhlak M, Guo M, Meyers C, Baker CC, Zheng ZM. (2009) Control of the papillomavirus early-to-late switch by differentially expressed SRp20. J Virol. 83(1):167-180.		Sequences deriving from BPV-1 and HPV-16 mRNAs.		EMSA, immunoprecipitation with HEK293 NE, U20S NE and U20S total cell extract.
hnRNP L	CUGCACCACCACCUAUCUA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	18945760	Jia R, Liu X, Tao M, Kruhlak M, Guo M, Meyers C, Baker CC, Zheng ZM. (2009) Control of the papillomavirus early-to-late switch by differentially expressed SRp20. J Virol. 83(1):167-180.		Sequences deriving from BPV-1 and HPV-16 mRNAs.		EMSA, immunoprecipitation with HEK293 NE, U20S NE and U20S total cell extract.
hnRNP L	UGUGUCACUGUCUGGUUC	-1	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	18945760	Jia R, Liu X, Tao M, Kruhlak M, Guo M, Meyers C, Baker CC, Zheng ZM. (2009) Control of the papillomavirus early-to-late switch by differentially expressed SRp20. J Virol. 83(1):167-180.		Sequences deriving from BPV-1 and HPV-16 mRNAs.		EMSA, immunoprecipitation with HEK293 NE, U20S NE and U20S total cell extract.
hnRNP L	GGCAGGAAGAAGAGGAGCA	-3	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	18945760	Jia R, Liu X, Tao M, Kruhlak M, Guo M, Meyers C, Baker CC, Zheng ZM. (2009) Control of the papillomavirus early-to-late switch by differentially expressed SRp20. J Virol. 83(1):167-180.		Sequences deriving from BPV-1 and HPV-16 mRNAs.		EMSA, immunoprecipitation with HEK293 NE, U20S NE and U20S total cell extract.
hnRNP L	CCAGACACCGGAAACCCCUGCCACACCAC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	18945760	Jia R, Liu X, Tao M, Kruhlak M, Guo M, Meyers C, Baker CC, Zheng ZM. (2009) Control of the papillomavirus early-to-late switch by differentially expressed SRp20. J Virol. 83(1):167-180.		Sequences deriving from BPV-1 and HPV-16 mRNAs.		EMSA, immunoprecipitation with HEK293 NE, U20S NE and U20S total cell extract.
hnRNP L	UAUGAUAGGGACUUAGGGUG	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	11571276	Caputi M, Zahler AM. (2001) Determination of the RNA Binding Specificity of the Heterogeneous Nuclear Ribonucleoprotein (hnRNP) H/H'/F/2H9 Family. J Biol Chem. 276(47): 43850-43859.		Synthesized oligos, constructs of Rev-dependent export (p17gag INS), beta-tropomyosin TPM2 [7169], c-src [20779].		RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography.
hnRNP L	UAUGACCCGGACUCCCGGUG	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	11571276	Caputi M, Zahler AM. (2001) Determination of the RNA Binding Specificity of the Heterogeneous Nuclear Ribonucleoprotein (hnRNP) H/H'/F/2H9 Family. J Biol Chem. 276(47): 43850-43859.		Synthesized oligos, constructs of Rev-dependent export (p17gag INS), beta-tropomyosin TPM2 [7169], c-src [20779].		RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography.
hnRNP L	UAUGAUAGGCUCAUAGGGUG	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	11571276	Caputi M, Zahler AM. (2001) Determination of the RNA Binding Specificity of the Heterogeneous Nuclear Ribonucleoprotein (hnRNP) H/H'/F/2H9 Family. J Biol Chem. 276(47): 43850-43859.		Synthesized oligos, constructs of Rev-dependent export (p17gag INS), beta-tropomyosin TPM2 [7169], c-src [20779].		RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography.
hnRNP L	UAUGAUAGGCACUUAGGCUG	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	11571276	Caputi M, Zahler AM. (2001) Determination of the RNA Binding Specificity of the Heterogeneous Nuclear Ribonucleoprotein (hnRNP) H/H'/F/2H9 Family. J Biol Chem. 276(47): 43850-43859.		Synthesized oligos, constructs of Rev-dependent export (p17gag INS), beta-tropomyosin TPM2 [7169], c-src [20779].		RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography.
hnRNP L	UUAGAUCGAUGGGAAAAAAUUCGUUAAGG	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	11571276	Caputi M, Zahler AM. (2001) Determination of the RNA Binding Specificity of the Heterogeneous Nuclear Ribonucleoprotein (hnRNP) H/H'/F/2H9 Family. J Biol Chem. 276(47): 43850-43859.		Synthesized oligos, constructs of Rev-dependent export (p17gag INS), beta-tropomyosin TPM2 [7169], c-src [20779].		RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography.
hnRNP L	UUAGAUCGAUCCCAAAAAAUUCGUUAAGG	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	11571276	Caputi M, Zahler AM. (2001) Determination of the RNA Binding Specificity of the Heterogeneous Nuclear Ribonucleoprotein (hnRNP) H/H'/F/2H9 Family. J Biol Chem. 276(47): 43850-43859.		Synthesized oligos, constructs of Rev-dependent export (p17gag INS), beta-tropomyosin TPM2 [7169], c-src [20779].		RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography.
hnRNP L	UAAAUGUGGGGACCUAGAGGAGGAGCUGAAAAUUGUUA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	11571276	Caputi M, Zahler AM. (2001) Determination of the RNA Binding Specificity of the Heterogeneous Nuclear Ribonucleoprotein (hnRNP) H/H'/F/2H9 Family. J Biol Chem. 276(47): 43850-43859.		Synthesized oligos, constructs of Rev-dependent export (p17gag INS), beta-tropomyosin TPM2 [7169], c-src [20779].		RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography.
hnRNP L	UAAACUACGCGACCUAGAGGAGGAGCUGAAAAUUGUUA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	11571276	Caputi M, Zahler AM. (2001) Determination of the RNA Binding Specificity of the Heterogeneous Nuclear Ribonucleoprotein (hnRNP) H/H'/F/2H9 Family. J Biol Chem. 276(47): 43850-43859.		Synthesized oligos, constructs of Rev-dependent export (p17gag INS), beta-tropomyosin TPM2 [7169], c-src [20779].		RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography.
hnRNP L	UGCAAUGUACUUGCAAACAAUGGCCUGAGUGUGCAAAGAAAAUGUCUGCUAACUGC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	11571276	Caputi M, Zahler AM. (2001) Determination of the RNA Binding Specificity of the Heterogeneous Nuclear Ribonucleoprotein (hnRNP) H/H'/F/2H9 Family. J Biol Chem. 276(47): 43850-43859.		Synthesized oligos, constructs of Rev-dependent export (p17gag INS), beta-tropomyosin TPM2 [7169], c-src [20779].		RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography.
hnRNP L	ACAUGAACCUUCAGCGGCCA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	GUGCCCCAAACACCUUGCAC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	UCGCUGACAUACACAUACAC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	ACACAAUUGCACGCGACACA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	GGAACGGCAUACUGUUGGCU	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	AACACACACAACGCCAUCUG	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	GUCGGACACCAGCUCUGUGUA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	CUCAUGUCCACACAUGCACA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	UGGCCUAACACAUGAUCAGA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	CACACACACCCACAACCCCC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	UACACACACAACACAUUGGC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	CACACUACACACGACCAUGC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	ACAGCACACAACCUGGCACA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	GCACCAGCUCAUACACUACA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	AAACCACCCCAAACAACAAC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	AUUACACCACACCCACUCGG	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	UAACACCACCCAUUGCACCA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	ACACGACAUACCAUACAGAU	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	UCACACGACACUACCGGCAC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	AAAAACACCACCACAAACAA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	AUGUAAUUGUUCUCCGCGCA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	AAUCACAUACGCUUUACACA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	CUGCACCCUCCACCACGCCA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	UACACACAUUCCGUGCAUGG	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	ACUGAUGACACCACUGACAA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	UCACACCACUUAAGCAAACA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	CGCACCACAUUACAUGCACA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	GCCGGACUACACGCAACACA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	GCGCUGCACCCACAGCCACG	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	CGCUGCCCUCACUCGCACACA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	GGGGACUCUACAUCGACAUA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	CCAACCCCAAACCCCAACAA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	UCACUAAACUCCACAGCACA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	AACACGCACGCAUUGUUACA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	CACACGACACGACGACACAU	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	GCCUGACACAUACACCGACA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	UGCAAACCUAAAUGAGGUACA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	UUUACAUACCAACACCAGGC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	AUACAUGACACACACACGCA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	GUGCCAUGAACACCACGACA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	ACACUACAUAAGCACCACGA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	CACACACACUACACCACAC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	ACAUUGCAUACAUACACGGC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	GAUCGCGCCCGCUGCAGUCG	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	GUCCCUAGUAGUGUGGGCA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	ACACAUUGCACACAUACCCC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	AGUAACACACACCCACGGCA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	GAACACGACAUACAUCGCAC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	UGCAUCUACGUACACACACA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	AUGCACACCCACAUGUCACA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	CCCCCCACCACCACAACCCC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	AAACACAACACAACCACCCC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	GGUAGGACCGGUGCUGUGAC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	GACACACACAACACAGACGC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	CCAAACAGUACACCAGCACA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	ACAAGCGCUCCCCGGCUCAU	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	GUACAUAUACACACACACGA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	UUCACCUUUACCGGCAGCCU	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	ACACCGGUGUACACUACAUG	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	CAAACACGCACCAACACACC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	GCACACGAAUAACAUCGCAC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	CUACACACGACACAUGAGGC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	CGGCCCACACGCAUGGUCGG	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	AAACACCACAACACACACCC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	UACACUAACAACGCACACAC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	ACACGCAACCAUGCAUACAC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	CCCCGCACUGACCGCACGCA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	GACCUAUACACCGCACCACA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	ACAUACACCACACGCAUUGA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	UUCACACCCCGCCGUUGACC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	GCAUACACACCCGCCUGGCA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	CACCGACGGCCUAUAUACAC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	UACGCACAUAACACAUCACA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	AGCACCUGCACACAUACAUG	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	CACCAGCCGGCACACACACG	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	ACACAACUCACGGCCACACG	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	CCAAACGGUGACCACUACAC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	AUGAUUAACUACACGCAAGA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	UCAUGCCCUGACAGUGCACG	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	ACACUCACACUACAUAUGGC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	AACUACACAUACACCGGACA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	ACACAUAAAACACAUACAUG	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	ACAGCAUACAUACAUACACG	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	GACUAGCAACACACACACAG	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	AGACACACACCCAGCCGGCC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	AAAGGGGCACAGUGUGCAG	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	GCACAUAUACAUCAUAACAC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	ACACGCAUACUUACAUACAC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	ACACAGCAUAACAUAUACAC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	CCGGACAAACACACGAACAC	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	CACACCACACACUGCUCACA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	AUACAACACACACGACAACA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	ACACCGAGACACUCACAACA	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	15889141	Hui J, Hung LH, Heiner M, Schreiner S, Neumuller N, Reither G, Haas SA, Bindereif A. (2005) Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24(11): 1988-1998.		Construct and variants of GSTZ1 [2954] EX4 - INT4 - EX5 - INT5 - EX6. Construct and variants of SLC2A2 [6514] EX3 - INT3 - EX4 - INT4 - EX5. Construct and variants of RFXANK [8625] EX4 - INT4 - EX5 - INT5 - EX6.	In vitro splicing with HeLa nuclear extracts.	Pull-down assays, UV crosslink, immunoprecipitation with HeLa nuclear extracts. SELEX of 20nt random with recombinant protein.
hnRNP L	CACACCACUGCAUUCUCACCCGCAAGCACC	-2	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	22402488	Preubner M, Schreiner S, Hung LH, Porstner M, Jack HM, Benes V, Ratsch G, Bindereif A. (2012) HnRNP L and L-like cooperate in multiple-exon regulation of CD45 alternative splicing. Nucleic Acids Res. 40(12):5666-5678.		Construncts of PTPRC [5788] EX3 - INT3 - EX4 - INT4 - EX5 - INT5 - EX6 - INT6 - EX7.	In vivo splicing in HeLa and siRNA knockdown.	Mutational analysis, pulldown, western blot in HeLa NE
hnRNP L	UACAGCCAGCACCUUUCCUACA	-2	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	22402488	Preubner M, Schreiner S, Hung LH, Porstner M, Jack HM, Benes V, Ratsch G, Bindereif A. (2012) HnRNP L and L-like cooperate in multiple-exon regulation of CD45 alternative splicing. Nucleic Acids Res. 40(12):5666-5678.		Construncts of PTPRC [5788] EX3 - INT3 - EX4 - INT4 - EX5 - INT5 - EX6 - INT6 - EX7.	In vivo splicing in HeLa and siRNA knockdown.	Mutational analysis, pulldown, western blot in HeLa NE
hnRNP L	UAGAGCCAGCAGCUUUCCUAGA	-2	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	22402488	Preubner M, Schreiner S, Hung LH, Porstner M, Jack HM, Benes V, Ratsch G, Bindereif A. (2012) HnRNP L and L-like cooperate in multiple-exon regulation of CD45 alternative splicing. Nucleic Acids Res. 40(12):5666-5678.		Construncts of PTPRC [5788] EX3 - INT3 - EX4 - INT4 - EX5 - INT5 - EX6 - INT6 - EX7.	In vivo splicing in HeLa and siRNA knockdown.	Mutational analysis, pulldown, western blot in HeLa NE
hnRNP L	CACACCACA	-2	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	22402488	Preubner M, Schreiner S, Hung LH, Porstner M, Jack HM, Benes V, Ratsch G, Bindereif A. (2012) HnRNP L and L-like cooperate in multiple-exon regulation of CD45 alternative splicing. Nucleic Acids Res. 40(12):5666-5678.		Construncts of PTPRC [5788] EX3 - INT3 - EX4 - INT4 - EX5 - INT5 - EX6 - INT6 - EX7.	In vivo splicing in HeLa and siRNA knockdown.	Mutational analysis, pulldown, western blot in HeLa NE
hnRNP L	CACCUCCAACACCACCAUCACAGCGAACACC	-2	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	22402488	Preubner M, Schreiner S, Hung LH, Porstner M, Jack HM, Benes V, Ratsch G, Bindereif A. (2012) HnRNP L and L-like cooperate in multiple-exon regulation of CD45 alternative splicing. Nucleic Acids Res. 40(12):5666-5678.		Construncts of PTPRC [5788] EX3 - INT3 - EX4 - INT4 - EX5 - INT5 - EX6 - INT6 - EX7.	In vivo splicing in HeLa and siRNA knockdown.	Mutational analysis, pulldown, western blot in HeLa NE
hnRNP L	CAGCUCCAAGACGACCAUCAGAGCGAAGACC	-1	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	22402488	Preubner M, Schreiner S, Hung LH, Porstner M, Jack HM, Benes V, Ratsch G, Bindereif A. (2012) HnRNP L and L-like cooperate in multiple-exon regulation of CD45 alternative splicing. Nucleic Acids Res. 40(12):5666-5678.		Construncts of PTPRC [5788] EX3 - INT3 - EX4 - INT4 - EX5 - INT5 - EX6 - INT6 - EX7.	In vivo splicing in HeLa and siRNA knockdown.	Mutational analysis, pulldown, western blot in HeLa NE
hnRNP L	CCACGCACGCAGACUCGCAGACGCCCUCUGCUGGAACUGACACGCAGACAUUCAGCGGCU	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	20122404	Motta-Mena LB, Heyd F, Lynch KW. (2010) Context-dependent regulatory mechanism of the splicing factor hnRNP L. Mol Cell. 37(2):223-234.		Constructs of wt or mutated PTPRC [5788] EX3 - INT3 - EX4 - INT4 - EX7 and EX3 - INT3 - EX5 - INT5 - EX7.	In vitro splicing in JSL1 NE	Mutational analysis. EMSA with recombinant proteins or JSL1 NE. Pull-down and western blotting with JSL1 NE.
hnRNP L	CCACGCACGCAGACUCGCAG	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	20122404	Motta-Mena LB, Heyd F, Lynch KW. (2010) Context-dependent regulatory mechanism of the splicing factor hnRNP L. Mol Cell. 37(2):223-234.		Constructs of wt or mutated PTPRC [5788] EX3 - INT3 - EX4 - INT4 - EX7 and EX3 - INT3 - EX5 - INT5 - EX7.	In vitro splicing in JSL1 NE	Mutational analysis. EMSA with recombinant proteins or JSL1 NE. Pull-down and western blotting with JSL1 NE.
hnRNP L	CACGCAGACAUUCAGCGGCU	-5	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	20122404	Motta-Mena LB, Heyd F, Lynch KW. (2010) Context-dependent regulatory mechanism of the splicing factor hnRNP L. Mol Cell. 37(2):223-234.		Constructs of wt or mutated PTPRC [5788] EX3 - INT3 - EX4 - INT4 - EX7 and EX3 - INT3 - EX5 - INT5 - EX7.	In vitro splicing in JSL1 NE	Mutational analysis. EMSA with recombinant proteins or JSL1 NE. Pull-down and western blotting with JSL1 NE.
hnRNP L	GGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCC	-10	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP L	AAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACC	-1	Gene Name and Synonymous: HNRNPL, heterogeneous nuclear ribonucleoprotein L, HNRPL, FLJ35509, P/OKcl.14 Note that "short distances of the CA-sequence to the alternative 5'ss correlate with a silencer role (SLC2A2, RFXANK), longer distances with enhancer function (MAPK10, GSTZ1, eNOS)" (PMID:15889141). Excess hnRNP L activates exon 6A inclusion in its own mRNA and, via NMD, contributes to homeostasis of hnRNP L levels (PMID: 19124611).	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP LL	CACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACA	-5	Gene Name and Synonymous: HNRPLL, heterogeneous nuclear ribonucleoprotein L-like, SRRF, hnRNPLL, HNRPLL. hnRNP LL causes CD45 EX4 skipping via ESS1 binding (PMID: 18719244).	19124611	Rossbach O, Hung LH, Schreiner S, Grishina I, Heiner M, Hui J, Bindereif A. (2009) Auto- and cross-regulation of the hnRNP L proteins by alternative splicing. Mol Cell Biol. 29(6): 1442-1451.	In this context, hnRNP L activates inclusion of exon 6A.	Construct of hnRNPL [3191] EX1_DUP - INT1_DUP - INT6_hnRNPL - EX6A_hnRNPL - INT6_hnRNPL - INT2_DUP - EX2_DUP. Construct of hnRNPLL [92906] EX6 - INT6 - EX7.	In vitro alternative splicing assay and hnRNP L depletion/complementation and RNAi knockdown in HeLa cell in order to determine hnRNP L activity.	Pull-down assay and immunoblotting in HeLa cell nuclear extract.
hnRNP LL	CACUGCAUUCUCACCCGCAAGCA	-5	Gene Name and Synonymous: HNRPLL, heterogeneous nuclear ribonucleoprotein L-like, SRRF, hnRNPLL, HNRPLL. hnRNP LL causes CD45 EX4 skipping via ESS1 binding (PMID: 18719244).	18719244	Topp JD, Jackson J, Melton AA, Lynch KW. (2008) A cell-based screen for splicing regulators identifies hnRNP LL as a distinct signal-induced repressor of CD45 variable exon 4. RNA. 14(10): 2038-2049.		Synthesized sequences. Construct CD45 [PTPRC, 5788] EX3 - INT - EX4 - INT - EX7.	In vivo splicing in JSL1 cells.	UV cross-linking and immunoprecipitation in JSL1 nuclear extract.
hnRNP LL	CACUGGAUUCUCACCCGGAAGUA	-2	Gene Name and Synonymous: HNRPLL, heterogeneous nuclear ribonucleoprotein L-like, SRRF, hnRNPLL, HNRPLL. hnRNP LL causes CD45 EX4 skipping via ESS1 binding (PMID: 18719244).	18719244	Topp JD, Jackson J, Melton AA, Lynch KW. (2008) A cell-based screen for splicing regulators identifies hnRNP LL as a distinct signal-induced repressor of CD45 variable exon 4. RNA. 14(10): 2038-2049.		Synthesized sequences. Construct CD45 [PTPRC, 5788] EX3 - INT - EX4 - INT - EX7.	In vivo splicing in JSL1 cells.	UV cross-linking and immunoprecipitation in JSL1 nuclear extract.
hnRNP LL	CACUGCAGUGUCACCCGCAAGCA	-2	Gene Name and Synonymous: HNRPLL, heterogeneous nuclear ribonucleoprotein L-like, SRRF, hnRNPLL, HNRPLL. hnRNP LL causes CD45 EX4 skipping via ESS1 binding (PMID: 18719244).	18719244	Topp JD, Jackson J, Melton AA, Lynch KW. (2008) A cell-based screen for splicing regulators identifies hnRNP LL as a distinct signal-induced repressor of CD45 variable exon 4. RNA. 14(10): 2038-2049.		Synthesized sequences. Construct CD45 [PTPRC, 5788] EX3 - INT - EX4 - INT - EX7.	In vivo splicing in JSL1 cells.	UV cross-linking and immunoprecipitation in JSL1 nuclear extract.
hnRNP LL	CACACCACUGCAUUCUCACCCGCAAGCACC	-10	Gene Name and Synonymous: HNRPLL, heterogeneous nuclear ribonucleoprotein L-like, SRRF, hnRNPLL, HNRPLL. hnRNP LL causes CD45 EX4 skipping via ESS1 binding (PMID: 18719244).	22402488	Preubner M, Schreiner S, Hung LH, Porstner M, Jack HM, Benes V, Ratsch G, Bindereif A. (2012) HnRNP L and L-like cooperate in multiple-exon regulation of CD45 alternative splicing. Nucleic Acids Res. 40(12):5666-5678.		Construncts of PTPRC [5788] EX3 - INT3 - EX4 - INT4 - EX5 - INT5 - EX6 - INT6 - EX7.	In vivo splicing in HeLa and siRNA knockdown.	Mutational analysis, pulldown, western blot in HeLa NE
hnRNP LL	UACAGCCAGCACCUUUCCUACA	-10	Gene Name and Synonymous: HNRPLL, heterogeneous nuclear ribonucleoprotein L-like, SRRF, hnRNPLL, HNRPLL. hnRNP LL causes CD45 EX4 skipping via ESS1 binding (PMID: 18719244).	22402488	Preubner M, Schreiner S, Hung LH, Porstner M, Jack HM, Benes V, Ratsch G, Bindereif A. (2012) HnRNP L and L-like cooperate in multiple-exon regulation of CD45 alternative splicing. Nucleic Acids Res. 40(12):5666-5678.		Construncts of PTPRC [5788] EX3 - INT3 - EX4 - INT4 - EX5 - INT5 - EX6 - INT6 - EX7.	In vivo splicing in HeLa and siRNA knockdown.	Mutational analysis, pulldown, western blot in HeLa NE
hnRNP LL	UAGAGCCAGCAGCUUUCCUAGA	-10	Gene Name and Synonymous: HNRPLL, heterogeneous nuclear ribonucleoprotein L-like, SRRF, hnRNPLL, HNRPLL. hnRNP LL causes CD45 EX4 skipping via ESS1 binding (PMID: 18719244).	22402488	Preubner M, Schreiner S, Hung LH, Porstner M, Jack HM, Benes V, Ratsch G, Bindereif A. (2012) HnRNP L and L-like cooperate in multiple-exon regulation of CD45 alternative splicing. Nucleic Acids Res. 40(12):5666-5678.		Construncts of PTPRC [5788] EX3 - INT3 - EX4 - INT4 - EX5 - INT5 - EX6 - INT6 - EX7.	In vivo splicing in HeLa and siRNA knockdown.	Mutational analysis, pulldown, western blot in HeLa NE
hnRNP LL	CACACCACA	-10	Gene Name and Synonymous: HNRPLL, heterogeneous nuclear ribonucleoprotein L-like, SRRF, hnRNPLL, HNRPLL. hnRNP LL causes CD45 EX4 skipping via ESS1 binding (PMID: 18719244).	22402488	Preubner M, Schreiner S, Hung LH, Porstner M, Jack HM, Benes V, Ratsch G, Bindereif A. (2012) HnRNP L and L-like cooperate in multiple-exon regulation of CD45 alternative splicing. Nucleic Acids Res. 40(12):5666-5678.		Construncts of PTPRC [5788] EX3 - INT3 - EX4 - INT4 - EX5 - INT5 - EX6 - INT6 - EX7.	In vivo splicing in HeLa and siRNA knockdown.	Mutational analysis, pulldown, western blot in HeLa NE
hnRNP LL	CAGACGACA	-4	Gene Name and Synonymous: HNRPLL, heterogeneous nuclear ribonucleoprotein L-like, SRRF, hnRNPLL, HNRPLL. hnRNP LL causes CD45 EX4 skipping via ESS1 binding (PMID: 18719244).	22402488	Preubner M, Schreiner S, Hung LH, Porstner M, Jack HM, Benes V, Ratsch G, Bindereif A. (2012) HnRNP L and L-like cooperate in multiple-exon regulation of CD45 alternative splicing. Nucleic Acids Res. 40(12):5666-5678.		Construncts of PTPRC [5788] EX3 - INT3 - EX4 - INT4 - EX5 - INT5 - EX6 - INT6 - EX7.	In vivo splicing in HeLa and siRNA knockdown.	Mutational analysis, pulldown, western blot in HeLa NE
hnRNP LL	CACCUCCAACACCACCAUCACAGCGAACACC	-10	Gene Name and Synonymous: HNRPLL, heterogeneous nuclear ribonucleoprotein L-like, SRRF, hnRNPLL, HNRPLL. hnRNP LL causes CD45 EX4 skipping via ESS1 binding (PMID: 18719244).	22402488	Preubner M, Schreiner S, Hung LH, Porstner M, Jack HM, Benes V, Ratsch G, Bindereif A. (2012) HnRNP L and L-like cooperate in multiple-exon regulation of CD45 alternative splicing. Nucleic Acids Res. 40(12):5666-5678.		Construncts of PTPRC [5788] EX3 - INT3 - EX4 - INT4 - EX5 - INT5 - EX6 - INT6 - EX7.	In vivo splicing in HeLa and siRNA knockdown.	Mutational analysis, pulldown, western blot in HeLa NE
hnRNP LL	CAGCUCCAAGACGACCAUCAGAGCGAAGACC	-4	Gene Name and Synonymous: HNRPLL, heterogeneous nuclear ribonucleoprotein L-like, SRRF, hnRNPLL, HNRPLL. hnRNP LL causes CD45 EX4 skipping via ESS1 binding (PMID: 18719244).	22402488	Preubner M, Schreiner S, Hung LH, Porstner M, Jack HM, Benes V, Ratsch G, Bindereif A. (2012) HnRNP L and L-like cooperate in multiple-exon regulation of CD45 alternative splicing. Nucleic Acids Res. 40(12):5666-5678.		Construncts of PTPRC [5788] EX3 - INT3 - EX4 - INT4 - EX5 - INT5 - EX6 - INT6 - EX7.	In vivo splicing in HeLa and siRNA knockdown.	Mutational analysis, pulldown, western blot in HeLa NE
hnRNP LL	CCACGCACGCAGACUCGCAGACGCCCUCUGCUGGAACUGACACGCAGACAUUCAGCGGCU	-1	Gene Name and Synonymous: HNRPLL, heterogeneous nuclear ribonucleoprotein L-like, SRRF, hnRNPLL, HNRPLL. hnRNP LL causes CD45 EX4 skipping via ESS1 binding (PMID: 18719244).	20122404	Motta-Mena LB, Heyd F, Lynch KW. (2010) Context-dependent regulatory mechanism of the splicing factor hnRNP L. Mol Cell. 37(2):223-234.		Constructs of wt or mutated PTPRC [5788] EX3 - INT3 - EX4 - INT4 - EX7 and EX3 - INT3 - EX5 - INT5 - EX7.	In vitro splicing in JSL1 NE	Mutational analysis. EMSA with recombinant proteins or JSL1 NE. Pull-down and western blotting with JSL1 NE.
hnRNP M	GGGGGGG	-7	Gene Name and Synonymous: HNRNPM, heterogeneous nuclear ribonucleoprotein M, HTGR1, NAGR1, HNRPM4, HNRNPM4, DKFZp547H118.	3386636	Swanson MS, Dreyfuss G. (1988) Classification and purification of proteins of heterogeneous nuclear ribonucleoprotein particles by RNA-binding specificities. Mol Cell Biol. 8(5):2237-2241.		homopolymers		Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract.
hnRNP M	GAAGGAA	5	Gene Name and Synonymous: HNRNPM, heterogeneous nuclear ribonucleoprotein M, HTGR1, NAGR1, HNRPM4, HNRNPM4, DKFZp547H118.	24533984	Cho S, Moon H, Loh TJ, Oh HK, Cho S, Choy HE, Song WK, Chun JS, Zheng X, Shen H. (2014) hnRNP M facilitates exon 7 inclusion of SMN2 pre-mRNA in spinal muscular atrophy by targeting an enhancer on exon 7. Biochim Biophys Acta. 1839(4):306-315.		Construct of wt and mutant SMN2 [6607] EX6 - INT6 - EX7 - INT7 - EX8	In vivo splicing in 293A, C33A, SH-SY5Y, GM03813	RNA pulldown assay in HeLa nuclear extracts. In vivo splicing with deletion and mutation analysis
hnRNP M	GGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCC	-2	Gene Name and Synonymous: HNRNPM, heterogeneous nuclear ribonucleoprotein M, HTGR1, NAGR1, HNRPM4, HNRNPM4, DKFZp547H118.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP M	AAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACC	-2	Gene Name and Synonymous: HNRNPM, heterogeneous nuclear ribonucleoprotein M, HTGR1, NAGR1, HNRPM4, HNRNPM4, DKFZp547H118.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP P (TLS)	AAAAAAA	-7	Gene Name and Synonymous: FUS, fusion (involved in t(12,16) in malignant liposarcoma), hnRNP-P2, TLS, CHOP, FUS1, FUS-CHOP, TLS/CHOP.	3386636	Swanson MS, Dreyfuss G. (1988) Classification and purification of proteins of heterogeneous nuclear ribonucleoprotein particles by RNA-binding specificities. Mol Cell Biol. 8(5):2237-2241.		homopolymers		Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract.
hnRNP P (TLS)	GGGGGGG	-7	Gene Name and Synonymous: FUS, fusion (involved in t(12,16) in malignant liposarcoma), hnRNP-P2, TLS, CHOP, FUS1, FUS-CHOP, TLS/CHOP.	3386636	Swanson MS, Dreyfuss G. (1988) Classification and purification of proteins of heterogeneous nuclear ribonucleoprotein particles by RNA-binding specificities. Mol Cell Biol. 8(5):2237-2241.		homopolymers		Immunoblotting of proteins selected by affinity chromatography with ribonucleotide homopolymer and HeLa nuclear extract.
hnRNP P (TLS)	UUUUUUU	-7	Gene Name and Synonymous: FUS, fusion (involved in t(12,16) in malignant liposarcoma), hnRNP-P2, TLS, CHOP, FUS1, FUS-CHOP, TLS/CHOP.	11098054	Lerga A, Hallier M, Delva L, Orvain C, Gallais I, Marie J, Moreau-Gachelin F. (2001) Identification of an RNA binding specificity for the potential splicing factor TLS. J Biol Chem. 276(9):6807-6816.		Homopolymers. Sequences of 25 nt random for SELEX.		SELEX of 25nt random with recombinant protein. SDS-PAGE, EMSA, UV crosslink, competition and immunoprecipitation assays with HeLa nuclear extracts.
hnRNP P (TLS)	CGGUGG	-8	Gene Name and Synonymous: FUS, fusion (involved in t(12,16) in malignant liposarcoma), hnRNP-P2, TLS, CHOP, FUS1, FUS-CHOP, TLS/CHOP.	11098054	Lerga A, Hallier M, Delva L, Orvain C, Gallais I, Marie J, Moreau-Gachelin F. (2001) Identification of an RNA binding specificity for the potential splicing factor TLS. J Biol Chem. 276(9):6807-6816.		Homopolymers. Sequences of 25 nt random for SELEX.		SELEX of 25nt random with recombinant protein. SDS-PAGE, EMSA, UV crosslink, competition and immunoprecipitation assays with HeLa nuclear extracts.
hnRNP P (TLS)	GGGUGA	-8	Gene Name and Synonymous: FUS, fusion (involved in t(12,16) in malignant liposarcoma), hnRNP-P2, TLS, CHOP, FUS1, FUS-CHOP, TLS/CHOP.	11098054	Lerga A, Hallier M, Delva L, Orvain C, Gallais I, Marie J, Moreau-Gachelin F. (2001) Identification of an RNA binding specificity for the potential splicing factor TLS. J Biol Chem. 276(9):6807-6816.		Homopolymers. Sequences of 25 nt random for SELEX.		SELEX of 25nt random with recombinant protein. SDS-PAGE, EMSA, UV crosslink, competition and immunoprecipitation assays with HeLa nuclear extracts.
hnRNP P (TLS)	GGGUGC	-8	Gene Name and Synonymous: FUS, fusion (involved in t(12,16) in malignant liposarcoma), hnRNP-P2, TLS, CHOP, FUS1, FUS-CHOP, TLS/CHOP.	11098054	Lerga A, Hallier M, Delva L, Orvain C, Gallais I, Marie J, Moreau-Gachelin F. (2001) Identification of an RNA binding specificity for the potential splicing factor TLS. J Biol Chem. 276(9):6807-6816.		Homopolymers. Sequences of 25 nt random for SELEX.		SELEX of 25nt random with recombinant protein. SDS-PAGE, EMSA, UV crosslink, competition and immunoprecipitation assays with HeLa nuclear extracts.
hnRNP P (TLS)	GGCGAAUUCGCUGGGGCUGGGCAGAGCGCGCAGGGUUGAGGGGAGCAGGGUCCUUCACUGGGGUGAA	-5	Gene Name and Synonymous: FUS, fusion (involved in t(12,16) in malignant liposarcoma), hnRNP-P2, TLS, CHOP, FUS1, FUS-CHOP, TLS/CHOP.	11098054	Lerga A, Hallier M, Delva L, Orvain C, Gallais I, Marie J, Moreau-Gachelin F. (2001) Identification of an RNA binding specificity for the potential splicing factor TLS. J Biol Chem. 276(9):6807-6816.		Homopolymers. Sequences of 25 nt random for SELEX.		SELEX of 25nt random with recombinant protein. SDS-PAGE, EMSA, UV crosslink, competition and immunoprecipitation assays with HeLa nuclear extracts.
hnRNP P (TLS)	UUAGGGUUAGGGUUAGGGUUAGGG	-10	Gene Name and Synonymous: FUS, fusion (involved in t(12,16) in malignant liposarcoma), hnRNP-P2, TLS, CHOP, FUS1, FUS-CHOP, TLS/CHOP.	18776329	Takahama K, Kino K, Arai S, Kurokawa R, Oyoshi T. (2008) Identification of RNA binding specificity for the TET-family proteins. Nucleic Acids Symp Ser (Oxf). (52):213-214.		Synthesized oligos		EMSA with recombinant protein
hnRNP P (TLS)	UUGGGGUUGGGGUUGGGGUUGGGG	-1	Gene Name and Synonymous: FUS, fusion (involved in t(12,16) in malignant liposarcoma), hnRNP-P2, TLS, CHOP, FUS1, FUS-CHOP, TLS/CHOP.	18776329	Takahama K, Kino K, Arai S, Kurokawa R, Oyoshi T. (2008) Identification of RNA binding specificity for the TET-family proteins. Nucleic Acids Symp Ser (Oxf). (52):213-214.		Synthesized oligos		EMSA with recombinant protein
hnRNP P (TLS)	GGGUGG	-8	Gene Name and Synonymous: FUS, fusion (involved in t(12,16) in malignant liposarcoma), hnRNP-P2, TLS, CHOP, FUS1, FUS-CHOP, TLS/CHOP.	11098054	Lerga A, Hallier M, Delva L, Orvain C, Gallais I, Marie J, Moreau-Gachelin F. (2001) Identification of an RNA binding specificity for the potential splicing factor TLS. J Biol Chem. 276(9):6807-6816.		Homopolymers. Sequences of 25 nt random for SELEX.		SELEX of 25nt random with recombinant protein. SDS-PAGE, EMSA, UV crosslink, competition and immunoprecipitation assays with HeLa nuclear extracts.
hnRNP P (TLS)	GGGUGU	-8	Gene Name and Synonymous: FUS, fusion (involved in t(12,16) in malignant liposarcoma), hnRNP-P2, TLS, CHOP, FUS1, FUS-CHOP, TLS/CHOP.	11098054	Lerga A, Hallier M, Delva L, Orvain C, Gallais I, Marie J, Moreau-Gachelin F. (2001) Identification of an RNA binding specificity for the potential splicing factor TLS. J Biol Chem. 276(9):6807-6816.		Homopolymers. Sequences of 25 nt random for SELEX.		SELEX of 25nt random with recombinant protein. SDS-PAGE, EMSA, UV crosslink, competition and immunoprecipitation assays with HeLa nuclear extracts.
hnRNP P (TLS)	UGGUGA	-8	Gene Name and Synonymous: FUS, fusion (involved in t(12,16) in malignant liposarcoma), hnRNP-P2, TLS, CHOP, FUS1, FUS-CHOP, TLS/CHOP.	11098054	Lerga A, Hallier M, Delva L, Orvain C, Gallais I, Marie J, Moreau-Gachelin F. (2001) Identification of an RNA binding specificity for the potential splicing factor TLS. J Biol Chem. 276(9):6807-6816.		Homopolymers. Sequences of 25 nt random for SELEX.		SELEX of 25nt random with recombinant protein. SDS-PAGE, EMSA, UV crosslink, competition and immunoprecipitation assays with HeLa nuclear extracts.
hnRNP P (TLS)	UGGUGG	-8	Gene Name and Synonymous: FUS, fusion (involved in t(12,16) in malignant liposarcoma), hnRNP-P2, TLS, CHOP, FUS1, FUS-CHOP, TLS/CHOP.	11098054	Lerga A, Hallier M, Delva L, Orvain C, Gallais I, Marie J, Moreau-Gachelin F. (2001) Identification of an RNA binding specificity for the potential splicing factor TLS. J Biol Chem. 276(9):6807-6816.		Homopolymers. Sequences of 25 nt random for SELEX.		SELEX of 25nt random with recombinant protein. SDS-PAGE, EMSA, UV crosslink, competition and immunoprecipitation assays with HeLa nuclear extracts.
hnRNP P (TLS)	UGGUGU	-8	Gene Name and Synonymous: FUS, fusion (involved in t(12,16) in malignant liposarcoma), hnRNP-P2, TLS, CHOP, FUS1, FUS-CHOP, TLS/CHOP.	11098054	Lerga A, Hallier M, Delva L, Orvain C, Gallais I, Marie J, Moreau-Gachelin F. (2001) Identification of an RNA binding specificity for the potential splicing factor TLS. J Biol Chem. 276(9):6807-6816.		Homopolymers. Sequences of 25 nt random for SELEX.		SELEX of 25nt random with recombinant protein. SDS-PAGE, EMSA, UV crosslink, competition and immunoprecipitation assays with HeLa nuclear extracts.
hnRNP P (TLS)	CGGUGA	-2	Gene Name and Synonymous: FUS, fusion (involved in t(12,16) in malignant liposarcoma), hnRNP-P2, TLS, CHOP, FUS1, FUS-CHOP, TLS/CHOP.	11098054	Lerga A, Hallier M, Delva L, Orvain C, Gallais I, Marie J, Moreau-Gachelin F. (2001) Identification of an RNA binding specificity for the potential splicing factor TLS. J Biol Chem. 276(9):6807-6816.		Homopolymers. Sequences of 25 nt random for SELEX.		SELEX of 25nt random with recombinant protein. SDS-PAGE, EMSA, UV crosslink, competition and immunoprecipitation assays with HeLa nuclear extracts.
hnRNP P (TLS)	GGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCC	-10	Gene Name and Synonymous: FUS, fusion (involved in t(12,16) in malignant liposarcoma), hnRNP-P2, TLS, CHOP, FUS1, FUS-CHOP, TLS/CHOP.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP P (TLS)	AAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACC	-1	Gene Name and Synonymous: FUS, fusion (involved in t(12,16) in malignant liposarcoma), hnRNP-P2, TLS, CHOP, FUS1, FUS-CHOP, TLS/CHOP.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP P (TLS)	AGGGUUGAGGGGAGCAGGG	-5	Gene Name and Synonymous: FUS, fusion (involved in t(12,16) in malignant liposarcoma), hnRNP-P2, TLS, CHOP, FUS1, FUS-CHOP, TLS/CHOP.	7567462	Sirand-Pugnet P, Durosay P, Brody E, Marie J. (1997) An intronic (A/U)GGG repeat enhances the splicing of an alternative intron of the chicken beta-tropomyosin pre-mRNA. Nucleic Acids Res. 23(17):3501-3507.		Sequences deriving from chicken TPM2 [396430]		UV crosslink and immunoprecipitation in HeLa nuclear extract
hnRNP Q	AAAAAGGAAAAAAAAAAACAAAAGACAAAAAAAAAAUAAGC	-5	Gene Name and Synonymous: SYNCRIP, synaptotagmin binding cytoplasmic RNA interacting protein, PP68, NSAP1, GRYRBP, HNRPQ1, GRY-RBP, hnRNP-Q, FLJ31626, dJ3J17.2 RBM5, RNA binding motif protein 5, G15, H37, RMB5, LUCA15, FLJ39876	18045242	Duning K, Buck F, Barnekow A, Kremerskothen J. (2008) SYNCRIP, a component of dendritically localized mRNPs, binds to the translation regulator BC200 RNA. J Neurochem. 105(2):351-359.		Sequences deriving from BCYRN1 [618] and homopolymers.		RNA af?nity puri?cation assays, Western blot, EMSA with RNA competitors using recombinant protein
hnRNP Q	AAAAAAA	-5	Gene Name and Synonymous: SYNCRIP, synaptotagmin binding cytoplasmic RNA interacting protein, PP68, NSAP1, GRYRBP, HNRPQ1, GRY-RBP, hnRNP-Q, FLJ31626, dJ3J17.2 RBM5, RNA binding motif protein 5, G15, H37, RMB5, LUCA15, FLJ39876	18045242	Duning K, Buck F, Barnekow A, Kremerskothen J. (2008) SYNCRIP, a component of dendritically localized mRNPs, binds to the translation regulator BC200 RNA. J Neurochem. 105(2):351-359.		Sequences deriving from BCYRN1 [618] and homopolymers.		RNA af?nity puri?cation assays, Western blot, EMSA with RNA competitors using recombinant protein
hnRNP Q	UUUUUUU	-1	Gene Name and Synonymous: SYNCRIP, synaptotagmin binding cytoplasmic RNA interacting protein, PP68, NSAP1, GRYRBP, HNRPQ1, GRY-RBP, hnRNP-Q, FLJ31626, dJ3J17.2 RBM5, RNA binding motif protein 5, G15, H37, RMB5, LUCA15, FLJ39876	15340051	Kim JH, Paek KY, Ha SH, Cho S, Choi K, Kim CS, Ryu SH, Jang SK. (2004) A cellular RNA-binding protein enhances internal ribosomal entry site-dependent translation through an interaction downstream of the hepatitis C virus polyprotein initiation codon. Mol Cell Biol. 24(18):7878-7890.		Sequences deriving from HCV2_gp1 [11027172] and homopolymers.		Protein affinity purification, MALDI-TOF, UV cross-linking and mutation analysis with HeLa S10 extracts. Competition assay using homopolymers with purified protein
hnRNP Q	AUGAGCACAAAUCCUAAACCUCAAAGAAAAACC	-5	Gene Name and Synonymous: SYNCRIP, synaptotagmin binding cytoplasmic RNA interacting protein, PP68, NSAP1, GRYRBP, HNRPQ1, GRY-RBP, hnRNP-Q, FLJ31626, dJ3J17.2 RBM5, RNA binding motif protein 5, G15, H37, RMB5, LUCA15, FLJ39876	15340051	Kim JH, Paek KY, Ha SH, Cho S, Choi K, Kim CS, Ryu SH, Jang SK. (2004) A cellular RNA-binding protein enhances internal ribosomal entry site-dependent translation through an interaction downstream of the hepatitis C virus polyprotein initiation codon. Mol Cell Biol. 24(18):7878-7890.		Sequences deriving from HCV2_gp1 [11027172] and homopolymers.		Protein affinity purification, MALDI-TOF, UV cross-linking and mutation analysis with HeLa S10 extracts. Competition assay using homopolymers with purified protein
hnRNP Q	AUUUUCCUUACAGGGUUUUAGACAAAAUCAAAAAG	5	Gene Name and Synonymous: SYNCRIP, synaptotagmin binding cytoplasmic RNA interacting protein, PP68, NSAP1, GRYRBP, HNRPQ1, GRY-RBP, hnRNP-Q, FLJ31626, dJ3J17.2 RBM5, RNA binding motif protein 5, G15, H37, RMB5, LUCA15, FLJ39876	18794368	Chen HH, Chang JG, Lu RM, Peng TY, Tarn WY. (2008) The RNA binding protein hnRNP Q modulates the utilization of exon 7 in the survival motor neuron 2 (SMN2) gene. Mol Cell Biol. 28(22):6929-6938.		Sequences deriving from SMN1 [6606], SMN2 [6607]. Constructs of wt and mutated SMN2 [6607] EX6 - INT6 - EX7 - INT7 - EX8.	In vivo splicing in HEK293.	RNA affinity chromatography using HeLa NE, MALDI-TOF. RNA affinity chromatography using HEK293 extracts, immunoblotting, UV cross-linking. EMSA with recombinant protein.
hnRNP Q	AUUUUCCUUACAGGGUUUCAGACAAAAUCAAAAAG	5	Gene Name and Synonymous: SYNCRIP, synaptotagmin binding cytoplasmic RNA interacting protein, PP68, NSAP1, GRYRBP, HNRPQ1, GRY-RBP, hnRNP-Q, FLJ31626, dJ3J17.2 RBM5, RNA binding motif protein 5, G15, H37, RMB5, LUCA15, FLJ39876	18794368	Chen HH, Chang JG, Lu RM, Peng TY, Tarn WY. (2008) The RNA binding protein hnRNP Q modulates the utilization of exon 7 in the survival motor neuron 2 (SMN2) gene. Mol Cell Biol. 28(22):6929-6938.		Sequences deriving from SMN1 [6606], SMN2 [6607]. Constructs of wt and mutated SMN2 [6607] EX6 - INT6 - EX7 - INT7 - EX8.	In vivo splicing in HEK293.	RNA affinity chromatography using HeLa NE, MALDI-TOF. RNA affinity chromatography using HEK293 extracts, immunoblotting, UV cross-linking. EMSA with recombinant protein.
hnRNP Q	AUUUUCCUUACAGGGCUUUUUGAUUUUGUCUAAAA	5	Gene Name and Synonymous: SYNCRIP, synaptotagmin binding cytoplasmic RNA interacting protein, PP68, NSAP1, GRYRBP, HNRPQ1, GRY-RBP, hnRNP-Q, FLJ31626, dJ3J17.2 RBM5, RNA binding motif protein 5, G15, H37, RMB5, LUCA15, FLJ39876	18794368	Chen HH, Chang JG, Lu RM, Peng TY, Tarn WY. (2008) The RNA binding protein hnRNP Q modulates the utilization of exon 7 in the survival motor neuron 2 (SMN2) gene. Mol Cell Biol. 28(22):6929-6938.		Sequences deriving from SMN1 [6606], SMN2 [6607]. Constructs of wt and mutated SMN2 [6607] EX6 - INT6 - EX7 - INT7 - EX8.	In vivo splicing in HEK293.	RNA affinity chromatography using HeLa NE, MALDI-TOF. RNA affinity chromatography using HEK293 extracts, immunoblotting, UV cross-linking. EMSA with recombinant protein.
hnRNP Q	GGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCC	-2	Gene Name and Synonymous: SYNCRIP, synaptotagmin binding cytoplasmic RNA interacting protein, PP68, NSAP1, GRYRBP, HNRPQ1, GRY-RBP, hnRNP-Q, FLJ31626, dJ3J17.2 RBM5, RNA binding motif protein 5, G15, H37, RMB5, LUCA15, FLJ39876	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP Q	AAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACC	-2	Gene Name and Synonymous: SYNCRIP, synaptotagmin binding cytoplasmic RNA interacting protein, PP68, NSAP1, GRYRBP, HNRPQ1, GRY-RBP, hnRNP-Q, FLJ31626, dJ3J17.2 RBM5, RNA binding motif protein 5, G15, H37, RMB5, LUCA15, FLJ39876	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP U	GGGGGGG	-4	Gene Name and Synonymous: HNRNPU, heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A), HNRPU, SAF-A, U21.1.	1628625	Kiledjian M, Dreyfuss G. (1992) Primary structure and binding activity of the hnRNP U protein: binding RNA through RGG box. EMBO J. 11(7):2655-64.	hnRNP U has no affinity to poly(rC).	homopolymers		SDS-PAGE of ribonucleotide homopolymers with recombinant protein
hnRNP U	AAAAAAA	-7	Gene Name and Synonymous: HNRNPU, heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A), HNRPU, SAF-A, U21.1.	1628625	Kiledjian M, Dreyfuss G. (1992) Primary structure and binding activity of the hnRNP U protein: binding RNA through RGG box. EMBO J. 11(7):2655-64.	hnRNP U has no affinity to poly(rC).	homopolymers		SDS-PAGE of ribonucleotide homopolymers with recombinant protein
hnRNP U	UUUUUUU	-5	Gene Name and Synonymous: HNRNPU, heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A), HNRPU, SAF-A, U21.1.	1628625	Kiledjian M, Dreyfuss G. (1992) Primary structure and binding activity of the hnRNP U protein: binding RNA through RGG box. EMBO J. 11(7):2655-64.	hnRNP U has no affinity to poly(rC).	homopolymers		SDS-PAGE of ribonucleotide homopolymers with recombinant protein
hnRNP U	ACGAAGACAAACAAA	-5	Gene Name and Synonymous: HNRNPU, heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A), HNRPU, SAF-A, U21.1.	9765391	Gupta AK, Drazba JA, Banerjee AK. (1998) Specific interaction of heterogeneous nuclear ribonucleoprotein particle U with the leader RNA sequence of vesicular stomatitis virus. J Virol. 72(11):8532-8540.	hnRNP U has no affinity to poly(rA).	Leader-sense (LS) RNA of Vesicular stomatitis virus (VSV).		EMSA, UV crosslink, immunoprecipitation using HeLa cell nuclear extracts. UV crosslink, competition assay with purified protein.
hnRNP U	CCCCCCC	-4	Gene Name and Synonymous: HNRNPU, heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A), HNRPU, SAF-A, U21.1.	8174554	Fackelmayer FO, Dahm K, Renz A, Ramsperger U, Richter A. (1994) Nucleic-acid-binding properties of hnRNP-U/SAF-A, a nuclear-matrix protein which binds DNA and RNA in vivo and in vitro. Eur J Biochem. 221(2):749-757.	hnRNP U has no affinity to poly(rU).	homopolymers		Filter Binding Assay with purified protein.
hnRNP U	UUAGACUCUCCUUUUGGAUACCUAGAUGUUUUAACA	-5	Gene Name and Synonymous: HNRNPU, heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A), HNRPU, SAF-A, U21.1.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
hnRNP U	UUAGACUCUCCUUUUGCAUACCUAGAUGUUUUAACA	-5	Gene Name and Synonymous: HNRNPU, heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A), HNRPU, SAF-A, U21.1.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
hnRNP U	UUAGACUCUCCUUUUGGAUUCCUAGAUGUUUUAACA	-5	Gene Name and Synonymous: HNRNPU, heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A), HNRPU, SAF-A, U21.1.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
hnRNP U	UUAGACUCCCCUUUUGGAUACCUAGAUGUUUUAACA	-5	Gene Name and Synonymous: HNRNPU, heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A), HNRPU, SAF-A, U21.1.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
hnRNP U	UUAGACUCUCCUUUUGGGUACCUAGAUGUUUUAACA	-5	Gene Name and Synonymous: HNRNPU, heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A), HNRPU, SAF-A, U21.1.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
hnRNP U	UUAGACUCUCCUUUUGGAUAUCUAGAUGUUUUAACA	-5	Gene Name and Synonymous: HNRNPU, heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A), HNRPU, SAF-A, U21.1.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
hnRNP U	CUGAUUUGUAUUUAUUAGACUC	-5	Gene Name and Synonymous: HNRNPU, heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A), HNRPU, SAF-A, U21.1.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
hnRNP U	AACAGAAAAAGAAAUAUUU	-5	Gene Name and Synonymous: HNRNPU, heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A), HNRPU, SAF-A, U21.1.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
hnRNP U	CUGAUUUGUACCUAUUAGAUUC	-5	Gene Name and Synonymous: HNRNPU, heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A), HNRPU, SAF-A, U21.1.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
hnRNP U	UACUGAAGAACAAGUAUUU	-5	Gene Name and Synonymous: HNRNPU, heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A), HNRPU, SAF-A, U21.1.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
hnRNP U	GGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCC	-2	Gene Name and Synonymous: HNRNPU, heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A), HNRPU, SAF-A, U21.1.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
hnRNP U	AAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACC	-2	Gene Name and Synonymous: HNRNPU, heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A), HNRPU, SAF-A, U21.1.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
HTra2alpha	AGAAGAACGAGGAACACAA	4	Gene Name and Synonymous: TRA2A, transformer-2 alpha, HSU53209.	9546399	Tacke R, Tohyama M, Ogawa S, Manley JL. (1998) Human Tra2 proteins are sequence-specific activators of pre-mRNA splicing. Cell. 93(1): 139-148.		Sequences of 20 nt random for SELEX. Sequence of beta-globin [3043] and constructs of murine IgM-based pre-mRNA for in vitro splicing.	In vitro splicing in HeLa S100 and nuclear extracts.	SELEX of 20nt random with recombinant protein, confirmed by EMSA in HeLa nuclear extract and S100. EMSA with recombinant protein.
HTra2alpha	AAGAA	7	Gene Name and Synonymous: TRA2A, transformer-2 alpha, HSU53209.	9546399	Tacke R, Tohyama M, Ogawa S, Manley JL. (1998) Human Tra2 proteins are sequence-specific activators of pre-mRNA splicing. Cell. 93(1): 139-148.		Sequences of 20 nt random for SELEX. Sequence of beta-globin [3043] and constructs of murine IgM-based pre-mRNA for in vitro splicing.	In vitro splicing in HeLa S100 and nuclear extracts.	SELEX of 20nt random with recombinant protein, confirmed by EMSA in HeLa nuclear extract and S100. EMSA with recombinant protein.
HTra2alpha	AAGAAGAA	8	Gene Name and Synonymous: TRA2A, transformer-2 alpha, HSU53209.	9546399	Tacke R, Tohyama M, Ogawa S, Manley JL. (1998) Human Tra2 proteins are sequence-specific activators of pre-mRNA splicing. Cell. 93(1): 139-148.		Sequences of 20 nt random for SELEX. Sequence of beta-globin [3043] and constructs of murine IgM-based pre-mRNA for in vitro splicing.	In vitro splicing in HeLa S100 and nuclear extracts.	SELEX of 20nt random with recombinant protein, confirmed by EMSA in HeLa nuclear extract and S100. EMSA with recombinant protein.
HTra2alpha	AAGAAGAAGAA	10	Gene Name and Synonymous: TRA2A, transformer-2 alpha, HSU53209.	9546399	Tacke R, Tohyama M, Ogawa S, Manley JL. (1998) Human Tra2 proteins are sequence-specific activators of pre-mRNA splicing. Cell. 93(1): 139-148.		Sequences of 20 nt random for SELEX. Sequence of beta-globin [3043] and constructs of murine IgM-based pre-mRNA for in vitro splicing.	In vitro splicing in HeLa S100 and nuclear extracts.	SELEX of 20nt random with recombinant protein, confirmed by EMSA in HeLa nuclear extract and S100. EMSA with recombinant protein.
HTra2alpha	GACAGAAGAACUCUCGACAGAAGAACUCUCGACAGAAGAACU	5	Gene Name and Synonymous: TRA2A, transformer-2 alpha, HSU53209.	9546399	Tacke R, Tohyama M, Ogawa S, Manley JL. (1998) Human Tra2 proteins are sequence-specific activators of pre-mRNA splicing. Cell. 93(1): 139-148.		Sequences of 20 nt random for SELEX. Sequence of beta-globin [3043] and constructs of murine IgM-based pre-mRNA for in vitro splicing.	In vitro splicing in HeLa S100 and nuclear extracts.	SELEX of 20nt random with recombinant protein, confirmed by EMSA in HeLa nuclear extract and S100. EMSA with recombinant protein.
HTra2alpha	GAAGAGGAAG	5	Gene Name and Synonymous: TRA2A, transformer-2 alpha, HSU53209.	12403832	Seong JY, Han J, Park S, Wuttke W, Jarry H, Kim K. (2002) Exonic splicing enhancer-dependent splicing of the gonadotropin-releasing hormone premessenger ribonucleic acid is mediated by tra2alpha, a 40-kilodalton serine/arginine-rich protein. Mol Endocrinol. 16(11):2426-2438.		Construct of mouse Gnrh1[14714] EX1 - INT1 - EX2 - EX3 - EX4	In vitro splicing of of Gnrh1-derived construct in HeLa nuclear extract with different concentrations of the protein.	EMSA, UV-crosslink, immunoprecipitation, mutation assay
HTra2alpha	GAAAGUCUGAUUGAAGAGGAAGCCAGGCAGAAGAAGA	5	Gene Name and Synonymous: TRA2A, transformer-2 alpha, HSU53209.	16249178	Park E, Han J, Son GH, Lee MS, Chung S, Park SH, Park K, Lee KH, Choi S, Seong JY, Kim K. (2006) Cooperative actions of Tra2alpha with 9G8 and SRp30c in the RNA splicing of the gonadotropin-releasing hormone gene transcript. J Biol Chem. 281(1):401-409.		Sequences deriving from mouse Gnrh1 [14714]. Construct of Gnrh1 [14714] EX1 - INT1 - EX2 - EX3 - EX4.	In vitro splicing in HeLa NE	EMSA, UV cross-linking with recombinant protein
HTra2beta1	AGAAGGAAGG	3	Gene Name and Synonymous: SFRS10, splicing factor arginine/serine-rich 10 (transformer 2 homolog, Drosophila), TRA2B, SRFS10, TRAN2B, TRA2-BETA, Htra2-beta, DKFZp686F18120.	10931943	Hofmann Y, Lorson CLL, Stamm S, Androphy EJ, Wirth B. (2000) Htra2-beta 1 stimulates an exonic splicing enhancer and can restore full-length SMN expression to survival motor neuron 2 (SMN2). Proc Natl Acad Sci U S A. 97(17): 9618-9623.		Constructs of SMN1 [6606] and SMN2 [6607] EX6 - INT6 - EX7 - INT7 - EX8 . Sequences and mutants of SMN1 and SMN2 EX7.	In vivo splicing in HEK293.	UV crosslink, competition assay in HeLa S100 and nuclear extracts. Immunoblotting in C33a extracts.
HTra2beta1	GAAAGAAG	5	Gene Name and Synonymous: SFRS10, splicing factor arginine/serine-rich 10 (transformer 2 homolog, Drosophila), TRA2B, SRFS10, TRAN2B, TRA2-BETA, Htra2-beta, DKFZp686F18120.	14709600	Stoilov P, Daoud R, Nayler O, Stamm S. (2004) Human tra2-beta1 autoregulates its protein concentration by influencing alternative splicing of its pre-mRNA. Hum Mol Genet. 13(5): 509-524.	Hyperphosphorylation of HTra2beta1 strongly reduces its binding to RNA.	Construct of tra2-beta [6434 ] EX1 - INT1 - EX2 - INT2 - EX3 - INT3 - EX4.		Pull down assay from HEK293 nuclear extract, western blot.
HTra2beta1	AGAAGAACGAGGAACACAA	4	Gene Name and Synonymous: SFRS10, splicing factor arginine/serine-rich 10 (transformer 2 homolog, Drosophila), TRA2B, SRFS10, TRAN2B, TRA2-BETA, Htra2-beta, DKFZp686F18120.	9546399	Tacke R, Tohyama M, Ogawa S, Manley JL. (1998) Human Tra2 proteins are sequence-specific activators of pre-mRNA splicing. Cell. 93(1): 139-148.		Sequences of 20 nt random for SELEX. Sequence of beta-globin [3043] and constructs of murine IgM-based pre-mRNA for in vitro splicing.	In vitro splicing in HeLa S100 and nuclear extracts.	SELEX of 20nt random with recombinant protein, confirmed by EMSA in HeLa nuclear extract and S100. EMSA with recombinant protein.
HTra2beta1	AAGAA	7	Gene Name and Synonymous: SFRS10, splicing factor arginine/serine-rich 10 (transformer 2 homolog, Drosophila), TRA2B, SRFS10, TRAN2B, TRA2-BETA, Htra2-beta, DKFZp686F18120.	9546399	Tacke R, Tohyama M, Ogawa S, Manley JL. (1998) Human Tra2 proteins are sequence-specific activators of pre-mRNA splicing. Cell. 93(1): 139-148.		Sequences of 20 nt random for SELEX. Sequence of beta-globin [3043] and constructs of murine IgM-based pre-mRNA for in vitro splicing.	In vitro splicing in HeLa S100 and nuclear extracts.	SELEX of 20nt random with recombinant protein, confirmed by EMSA in HeLa nuclear extract and S100. EMSA with recombinant protein.
HTra2beta1	AAGAAGAA	8	Gene Name and Synonymous: SFRS10, splicing factor arginine/serine-rich 10 (transformer 2 homolog, Drosophila), TRA2B, SRFS10, TRAN2B, TRA2-BETA, Htra2-beta, DKFZp686F18120.	9546399	Tacke R, Tohyama M, Ogawa S, Manley JL. (1998) Human Tra2 proteins are sequence-specific activators of pre-mRNA splicing. Cell. 93(1): 139-148.		Sequences of 20 nt random for SELEX. Sequence of beta-globin [3043] and constructs of murine IgM-based pre-mRNA for in vitro splicing.	In vitro splicing in HeLa S100 and nuclear extracts.	SELEX of 20nt random with recombinant protein, confirmed by EMSA in HeLa nuclear extract and S100. EMSA with recombinant protein.
HTra2beta1	AAGAAGAAGAA	10	Gene Name and Synonymous: SFRS10, splicing factor arginine/serine-rich 10 (transformer 2 homolog, Drosophila), TRA2B, SRFS10, TRAN2B, TRA2-BETA, Htra2-beta, DKFZp686F18120.	9546399	Tacke R, Tohyama M, Ogawa S, Manley JL. (1998) Human Tra2 proteins are sequence-specific activators of pre-mRNA splicing. Cell. 93(1): 139-148.		Sequences of 20 nt random for SELEX. Sequence of beta-globin [3043] and constructs of murine IgM-based pre-mRNA for in vitro splicing.	In vitro splicing in HeLa S100 and nuclear extracts.	SELEX of 20nt random with recombinant protein, confirmed by EMSA in HeLa nuclear extract and S100. EMSA with recombinant protein.
HTra2beta1	AAUAAGAAG	5	Gene Name and Synonymous: SFRS10, splicing factor arginine/serine-rich 10 (transformer 2 homolog, Drosophila), TRA2B, SRFS10, TRAN2B, TRA2-BETA, Htra2-beta, DKFZp686F18120.	12649279	Jiang Z, Tang H, Havlioglu N, Zhang X, Stamm S, Yan R, Wu JY. (2003) Mutations in tau gene exon 10 associated with FTDP-17 alter the activity of an exonic splicing enhancer to interact with Tra2 beta. J Biol Chem. 278(21):18997-19007.		Construct of Tau MAPT [4137] EX10 - INT10 - EX11.	In vitro splicing with HeLa, HEK293 and neuroblastoma N2a nuclear extracts.	UV crosslink, Western blot, immunoprecipitation, RNA interference with HeLa and HEK293 nuclear extracts.
HTra2beta1	AAGAAG	5	Gene Name and Synonymous: SFRS10, splicing factor arginine/serine-rich 10 (transformer 2 homolog, Drosophila), TRA2B, SRFS10, TRAN2B, TRA2-BETA, Htra2-beta, DKFZp686F18120.	16943417	Wu JY, Kar A, Kuo D, Yu B, Havlioglu N. (2006) SRp54 (SFRS11), a regulator for tau exon 10 alternative splicing identified by an expression cloning strategy. Mol Cell Biol. 26(18):6739-6747.		Construct of Tau MAPT [4137] EX9 - INT9 - EX10 - INT10 - EX11 with GFP cDNA inserted into EX11.	In vivo splicing in HEK293.	Positive clones identified by fluorescence-activated cell sorting and visual inspection. Confirmed by UV crosslink, immunoprecipitation, SDS-PAGE.
HTra2beta1	GAAGAAGAAGAAGAAGAAGAAGAAGAAGAA	5	Gene Name and Synonymous: SFRS10, splicing factor arginine/serine-rich 10 (transformer 2 homolog, Drosophila), TRA2B, SRFS10, TRAN2B, TRA2-BETA, Htra2-beta, DKFZp686F18120.	18597733	Baralle M, Pastor T, Bussani E, Pagani F. (2008) Influence of Friedreich ataxia GAA noncoding repeat expansions on pre-mRNA processing. Am J Hum Genet. 83(1): 77-88.		Synthesized sequences.		Mass spectrometry, immunoblot analysis.
HTra2beta1	GACAGAAGAACUCUCGACAGAAGAACUCUCGACAGAAGAACU	5	Gene Name and Synonymous: SFRS10, splicing factor arginine/serine-rich 10 (transformer 2 homolog, Drosophila), TRA2B, SRFS10, TRAN2B, TRA2-BETA, Htra2-beta, DKFZp686F18120.	9546399	Tacke R, Tohyama M, Ogawa S, Manley JL. (1998) Human Tra2 proteins are sequence-specific activators of pre-mRNA splicing. Cell. 93(1): 139-148.		Sequences of 20 nt random for SELEX. Sequence of beta-globin [3043] and constructs of murine IgM-based pre-mRNA for in vitro splicing.	In vitro splicing in HeLa S100 and nuclear extracts.	SELEX of 20nt random with recombinant protein, confirmed by EMSA in HeLa nuclear extract and S100. EMSA with recombinant protein.
HTra2beta1	AAGAAGAAG	9	Gene Name and Synonymous: SFRS10, splicing factor arginine/serine-rich 10 (transformer 2 homolog, Drosophila), TRA2B, SRFS10, TRAN2B, TRA2-BETA, Htra2-beta, DKFZp686F18120.	12649279	Jiang Z, Tang H, Havlioglu N, Zhang X, Stamm S, Yan R, Wu JY. (2003) Mutations in tau gene exon 10 associated with FTDP-17 alter the activity of an exonic splicing enhancer to interact with Tra2 beta. J Biol Chem. 278(21):18997-19007.		Construct of Tau MAPT [4137] EX10 - INT10 - EX11.	In vitro splicing with HeLa, HEK293 and neuroblastoma N2a nuclear extracts.	UV crosslink, Western blot, immunoprecipitation, RNA interference with HeLa and HEK293 nuclear extracts.
HTra2beta1	GAAGAAGGAAA	5	Gene Name and Synonymous: SFRS10, splicing factor arginine/serine-rich 10 (transformer 2 homolog, Drosophila), TRA2B, SRFS10, TRAN2B, TRA2-BETA, Htra2-beta, DKFZp686F18120.	14709600	Stoilov P, Daoud R, Nayler O, Stamm S. (2004) Human tra2-beta1 autoregulates its protein concentration by influencing alternative splicing of its pre-mRNA. Hum Mol Genet. 13(5): 509-524.	Hyperphosphorylation of HTra2beta1 strongly reduces its binding to RNA.	Construct of tra2-beta [6434 ] EX1 - INT1 - EX2 - INT2 - EX3 - INT3 - EX4.		Pull down assay from HEK293 nuclear extract, western blot.
HTra2beta1	GAAAGAAU	5	Gene Name and Synonymous: SFRS10, splicing factor arginine/serine-rich 10 (transformer 2 homolog, Drosophila), TRA2B, SRFS10, TRAN2B, TRA2-BETA, Htra2-beta, DKFZp686F18120.	14709600	Stoilov P, Daoud R, Nayler O, Stamm S. (2004) Human tra2-beta1 autoregulates its protein concentration by influencing alternative splicing of its pre-mRNA. Hum Mol Genet. 13(5): 509-524.	Hyperphosphorylation of HTra2beta1 strongly reduces its binding to RNA.	Construct of tra2-beta [6434 ] EX1 - INT1 - EX2 - INT2 - EX3 - INT3 - EX4.		Pull down assay from HEK293 nuclear extract, western blot.
HTra2beta1	GAAGAAUGAAGAAA	5	Gene Name and Synonymous: SFRS10, splicing factor arginine/serine-rich 10 (transformer 2 homolog, Drosophila), TRA2B, SRFS10, TRAN2B, TRA2-BETA, Htra2-beta, DKFZp686F18120.	14709600	Stoilov P, Daoud R, Nayler O, Stamm S. (2004) Human tra2-beta1 autoregulates its protein concentration by influencing alternative splicing of its pre-mRNA. Hum Mol Genet. 13(5): 509-524.	Hyperphosphorylation of HTra2beta1 strongly reduces its binding to RNA.	Construct of tra2-beta [6434 ] EX1 - INT1 - EX2 - INT2 - EX3 - INT3 - EX4.		Pull down assay from HEK293 nuclear extract, western blot.
HTra2beta1	GGGAGGAAGAAAUAGAAGAUGCAGAAGAGG	5	Gene Name and Synonymous: SFRS10, splicing factor arginine/serine-rich 10 (transformer 2 homolog, Drosophila), TRA2B, SRFS10, TRAN2B, TRA2-BETA, Htra2-beta, DKFZp686F18120.	16000324	Venables JP, Bourgeois CF, Dalgliesh C, Kister L, Stevenin J, Elliott DJ. (2005) Up-regulation of the ubiquitous alternative splicing factor Tra2beta causes inclusion of a germ cell-specific exon. Hum Mol Genet. 14(16):2289-22303.		Constructs of wt or mutated HBB [3043]_EX2 - HIPK3 [10114]_INT3 - HIPK3 [10114]_EX3bis - HIPK3 [10114]_INT3 - HBB [3043]_ EX3. Sequences deriving from HIPK3 [10114].	In vivo splicing in HEK293 cells.	Pulldown assay and western blot with HeLa NE
HTra2beta1	GAAGAAGAACGAAGAAGAAC	5	Gene Name and Synonymous: SFRS10, splicing factor arginine/serine-rich 10 (transformer 2 homolog, Drosophila), TRA2B, SRFS10, TRAN2B, TRA2-BETA, Htra2-beta, DKFZp686F18120.	16000324	Venables JP, Bourgeois CF, Dalgliesh C, Kister L, Stevenin J, Elliott DJ. (2005) Up-regulation of the ubiquitous alternative splicing factor Tra2beta causes inclusion of a germ cell-specific exon. Hum Mol Genet. 14(16):2289-22303.		Constructs of wt or mutated HBB [3043]_EX2 - HIPK3 [10114]_INT3 - HIPK3 [10114]_EX3bis - HIPK3 [10114]_INT3 - HBB [3043]_ EX3. Sequences deriving from HIPK3 [10114].	In vivo splicing in HEK293 cells.	Pulldown assay and western blot with HeLa NE
HTra2beta1	GGCGACUGGGGGGUCAGGG	5	Gene Name and Synonymous: SFRS10, splicing factor arginine/serine-rich 10 (transformer 2 homolog, Drosophila), TRA2B, SRFS10, TRAN2B, TRA2-BETA, Htra2-beta, DKFZp686F18120.	17913700	Novoyatleva T, Heinrich B, Tang Y, Benderska N, Butchbach ME, Lorson CL, Lorson MA, Ben-Dov C, Fehlbaum P, Bracco L, Burghes AH, Bollen M, Stamm S.(2008) Protein phosphatase 1 binds to the RNA recognition motif of several splicing factors and regulates alternative pre-mRNA processing. Hum Mol Genet. 17(1):52-70.		Synthesized sequences		EMSA with recombinant protein
HTra2beta1	CAAAAAGAAGGAAGGUGCUCACAU	10	Gene Name and Synonymous: SFRS10, splicing factor arginine/serine-rich 10 (transformer 2 homolog, Drosophila), TRA2B, SRFS10, TRAN2B, TRA2-BETA, Htra2-beta, DKFZp686F18120.	19953646	Vezain M, Saugier-Veber P, Goina E, Touraine R, Manel V, Toutain A, Fehrenbach S, Frebourg T, Pagani F, Tosi M, Martins A. (2010) A rare SMN2 variant in a previously unrecognized composite splicing regulatory element induces exon 7 inclusion and reduces the clinical severity of spinal muscular atrophy. Hum Mutat. 31(1):E1110-1125.		Sequences deriving from wt and mutated SMN2 [6607]. Constructs of SMN2 [6607] EX6 - INT6 - EX7 - INT7 - EX8.	In vivo splicing in HEK293	UV cross-linking and western blot with HeLa NE, EMSA with recombinant protein
HTra2beta1	CAAAAAGAACGAAGGUGCUCACAU	10	Gene Name and Synonymous: SFRS10, splicing factor arginine/serine-rich 10 (transformer 2 homolog, Drosophila), TRA2B, SRFS10, TRAN2B, TRA2-BETA, Htra2-beta, DKFZp686F18120.	19953646	Vezain M, Saugier-Veber P, Goina E, Touraine R, Manel V, Toutain A, Fehrenbach S, Frebourg T, Pagani F, Tosi M, Martins A. (2010) A rare SMN2 variant in a previously unrecognized composite splicing regulatory element induces exon 7 inclusion and reduces the clinical severity of spinal muscular atrophy. Hum Mutat. 31(1):E1110-1125.		Sequences deriving from wt and mutated SMN2 [6607]. Constructs of SMN2 [6607] EX6 - INT6 - EX7 - INT7 - EX8.	In vivo splicing in HEK293	UV cross-linking and western blot with HeLa NE, EMSA with recombinant protein
HTra2beta1	GAAGAA	10	Gene Name and Synonymous: SFRS10, splicing factor arginine/serine-rich 10 (transformer 2 homolog, Drosophila), TRA2B, SRFS10, TRAN2B, TRA2-BETA, Htra2-beta, DKFZp686F18120.	20926394	Tsuda K, Someya T, Kuwasako K, Takahashi M, He F, Unzai S, Inoue M, Harada T, Watanabe S, Terada T, Kobayashi N, Shirouzu M, Kigawa T, Tanaka A, Sugano S, Güntert P, Yokoyama S, Muto Y. (2010) Structural basis for the dual RNA-recognition modes of human Tra2-ß RRM. Nucleic Acids Res. 39(4):1538-1553.		Synthesized sequences		NMR spectroscopy
HTra2beta1	GACUUCAACAAGUC	9	Gene Name and Synonymous: SFRS10, splicing factor arginine/serine-rich 10 (transformer 2 homolog, Drosophila), TRA2B, SRFS10, TRAN2B, TRA2-BETA, Htra2-beta, DKFZp686F18120.	20926394	Tsuda K, Someya T, Kuwasako K, Takahashi M, He F, Unzai S, Inoue M, Harada T, Watanabe S, Terada T, Kobayashi N, Shirouzu M, Kigawa T, Tanaka A, Sugano S, Güntert P, Yokoyama S, Muto Y. (2010) Structural basis for the dual RNA-recognition modes of human Tra2-ß RRM. Nucleic Acids Res. 39(4):1538-1553.		Synthesized sequences		NMR spectroscopy
HTra2beta1	UCAAC	1	Gene Name and Synonymous: SFRS10, splicing factor arginine/serine-rich 10 (transformer 2 homolog, Drosophila), TRA2B, SRFS10, TRAN2B, TRA2-BETA, Htra2-beta, DKFZp686F18120.	20926394	Tsuda K, Someya T, Kuwasako K, Takahashi M, He F, Unzai S, Inoue M, Harada T, Watanabe S, Terada T, Kobayashi N, Shirouzu M, Kigawa T, Tanaka A, Sugano S, Güntert P, Yokoyama S, Muto Y. (2010) Structural basis for the dual RNA-recognition modes of human Tra2-ß RRM. Nucleic Acids Res. 39(4):1538-1553.		Synthesized sequences		NMR spectroscopy
HTra2beta1	AAGAAC	5	Gene Name and Synonymous: SFRS10, splicing factor arginine/serine-rich 10 (transformer 2 homolog, Drosophila), TRA2B, SRFS10, TRAN2B, TRA2-BETA, Htra2-beta, DKFZp686F18120.	24692659	Moursy A, Allain FH, Clery A. (2014) Characterization of the RNA recognition mode of hnRNP G extends its role in SMN2 splicing regulation. Nucleic Acids Res.		Sequences deriving from SMN2 [6607]. Synthetic sequences.		NMR spectroscopy, isothermal titration calorimetry. EMSA with recombinat protein and other competitor protein (HTra2beta1).
HTra2beta1	GAAGGA	5	Gene Name and Synonymous: SFRS10, splicing factor arginine/serine-rich 10 (transformer 2 homolog, Drosophila), TRA2B, SRFS10, TRAN2B, TRA2-BETA, Htra2-beta, DKFZp686F18120.	24632473	Cho S, Moon H, Loh TJ, Oh HK, Williams DR, Liao DJ, Zhou J, Green MR, Zheng X, Shen H. (2014) PSF contacts exon 7 of SMN2 pre-mRNA to promote exon 7 inclusion. Biochim Biophys Acta.		Construct of wt and mutant SMN2 [6607] EX6 - INT6 - EX7 - INT7 - EX8	In vivo splicing in 293A, C33A, SH-SY5Y along with PSF expression vector	RNA pulldown assay in HeLa nuclear extracts. In vivo splicing with deletion and mutation analysis.
HTra2beta1	GAAUUA	5	Gene Name and Synonymous: SFRS10, splicing factor arginine/serine-rich 10 (transformer 2 homolog, Drosophila), TRA2B, SRFS10, TRAN2B, TRA2-BETA, Htra2-beta, DKFZp686F18120.	24632473	Cho S, Moon H, Loh TJ, Oh HK, Williams DR, Liao DJ, Zhou J, Green MR, Zheng X, Shen H. (2014) PSF contacts exon 7 of SMN2 pre-mRNA to promote exon 7 inclusion. Biochim Biophys Acta.		Construct of wt and mutant SMN2 [6607] EX6 - INT6 - EX7 - INT7 - EX8	In vivo splicing in 293A, C33A, SH-SY5Y along with PSF expression vector	RNA pulldown assay in HeLa nuclear extracts. In vivo splicing with deletion and mutation analysis.
HTra2beta1	GGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCC	2	Gene Name and Synonymous: SFRS10, splicing factor arginine/serine-rich 10 (transformer 2 homolog, Drosophila), TRA2B, SRFS10, TRAN2B, TRA2-BETA, Htra2-beta, DKFZp686F18120.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
HTra2beta1	AAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACC	2	Gene Name and Synonymous: SFRS10, splicing factor arginine/serine-rich 10 (transformer 2 homolog, Drosophila), TRA2B, SRFS10, TRAN2B, TRA2-BETA, Htra2-beta, DKFZp686F18120.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
HuB	UUUUUUAUUUU	-5	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	17035636	Zhu H, Hasman RA, Barron VA, Luo G, Lou H. (2006) A nuclear function of Hu proteins as neuron-specific alternative RNA processing regulators. Mol Biol Cell. 17(12):5105-5114.		Construct from CALCA [796] INT3 to 3'end fused with EX1 and half of INT1 from the major late transcription unit of adenovirus		UV crosslink, immunoprecipitation, EMSA, Western blot with HeLa nuclear extracts.
HuB	AUUUAUUUU	-10	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	7972035	Gao FB, Carson CC, Levine T, Keene JD. (1994) Selection of a subset of mRNAs from combinatorial 3' untranslated region libraries using neuronal RNA-binding protein Hel-N1. Proc Natl Acad Sci U S A. 91(23):11207-11211.		Sequences of 25nt random for SELEX.		SELEX of random 25nt with purified protein.
HuB	UUUUAUUUA	-10	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	7972035	Gao FB, Carson CC, Levine T, Keene JD. (1994) Selection of a subset of mRNAs from combinatorial 3' untranslated region libraries using neuronal RNA-binding protein Hel-N1. Proc Natl Acad Sci U S A. 91(23):11207-11211.		Sequences of 25nt random for SELEX.		SELEX of random 25nt with purified protein.
HuB	UUUUAUUUU	-10	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	7972035	Gao FB, Carson CC, Levine T, Keene JD. (1994) Selection of a subset of mRNAs from combinatorial 3' untranslated region libraries using neuronal RNA-binding protein Hel-N1. Proc Natl Acad Sci U S A. 91(23):11207-11211.		Sequences of 25nt random for SELEX.		SELEX of random 25nt with purified protein.
HuB	UUUUAAUUU	-7	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	7972035	Gao FB, Carson CC, Levine T, Keene JD. (1994) Selection of a subset of mRNAs from combinatorial 3' untranslated region libraries using neuronal RNA-binding protein Hel-N1. Proc Natl Acad Sci U S A. 91(23):11207-11211.		Sequences of 25nt random for SELEX.		SELEX of random 25nt with purified protein.
HuB	UUUUAUUGU	-7	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	7972035	Gao FB, Carson CC, Levine T, Keene JD. (1994) Selection of a subset of mRNAs from combinatorial 3' untranslated region libraries using neuronal RNA-binding protein Hel-N1. Proc Natl Acad Sci U S A. 91(23):11207-11211.		Sequences of 25nt random for SELEX.		SELEX of random 25nt with purified protein.
HuB	AUUUACUUU	-5	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	7972035	Gao FB, Carson CC, Levine T, Keene JD. (1994) Selection of a subset of mRNAs from combinatorial 3' untranslated region libraries using neuronal RNA-binding protein Hel-N1. Proc Natl Acad Sci U S A. 91(23):11207-11211.		Sequences of 25nt random for SELEX.		SELEX of random 25nt with purified protein.
HuB	UUUAAUUUU	-5	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	7972035	Gao FB, Carson CC, Levine T, Keene JD. (1994) Selection of a subset of mRNAs from combinatorial 3' untranslated region libraries using neuronal RNA-binding protein Hel-N1. Proc Natl Acad Sci U S A. 91(23):11207-11211.		Sequences of 25nt random for SELEX.		SELEX of random 25nt with purified protein.
HuB	UUUCAUUUU	-5	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	7972035	Gao FB, Carson CC, Levine T, Keene JD. (1994) Selection of a subset of mRNAs from combinatorial 3' untranslated region libraries using neuronal RNA-binding protein Hel-N1. Proc Natl Acad Sci U S A. 91(23):11207-11211.		Sequences of 25nt random for SELEX.		SELEX of random 25nt with purified protein.
HuB	AUUUAUACU	-2	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	7972035	Gao FB, Carson CC, Levine T, Keene JD. (1994) Selection of a subset of mRNAs from combinatorial 3' untranslated region libraries using neuronal RNA-binding protein Hel-N1. Proc Natl Acad Sci U S A. 91(23):11207-11211.		Sequences of 25nt random for SELEX.		SELEX of random 25nt with purified protein.
HuB	AUUUAUAUA	-2	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	7972035	Gao FB, Carson CC, Levine T, Keene JD. (1994) Selection of a subset of mRNAs from combinatorial 3' untranslated region libraries using neuronal RNA-binding protein Hel-N1. Proc Natl Acad Sci U S A. 91(23):11207-11211.		Sequences of 25nt random for SELEX.		SELEX of random 25nt with purified protein.
HuB	CUUUAAUUU	-2	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	7972035	Gao FB, Carson CC, Levine T, Keene JD. (1994) Selection of a subset of mRNAs from combinatorial 3' untranslated region libraries using neuronal RNA-binding protein Hel-N1. Proc Natl Acad Sci U S A. 91(23):11207-11211.		Sequences of 25nt random for SELEX.		SELEX of random 25nt with purified protein.
HuB	CUUUCUUUU	-2	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	7972035	Gao FB, Carson CC, Levine T, Keene JD. (1994) Selection of a subset of mRNAs from combinatorial 3' untranslated region libraries using neuronal RNA-binding protein Hel-N1. Proc Natl Acad Sci U S A. 91(23):11207-11211.		Sequences of 25nt random for SELEX.		SELEX of random 25nt with purified protein.
HuB	UAUUAUUUU	-2	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	7972035	Gao FB, Carson CC, Levine T, Keene JD. (1994) Selection of a subset of mRNAs from combinatorial 3' untranslated region libraries using neuronal RNA-binding protein Hel-N1. Proc Natl Acad Sci U S A. 91(23):11207-11211.		Sequences of 25nt random for SELEX.		SELEX of random 25nt with purified protein.
HuB	UCUUAUAUU	-2	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	7972035	Gao FB, Carson CC, Levine T, Keene JD. (1994) Selection of a subset of mRNAs from combinatorial 3' untranslated region libraries using neuronal RNA-binding protein Hel-N1. Proc Natl Acad Sci U S A. 91(23):11207-11211.		Sequences of 25nt random for SELEX.		SELEX of random 25nt with purified protein.
HuB	UUAUACUUU	-2	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	7972035	Gao FB, Carson CC, Levine T, Keene JD. (1994) Selection of a subset of mRNAs from combinatorial 3' untranslated region libraries using neuronal RNA-binding protein Hel-N1. Proc Natl Acad Sci U S A. 91(23):11207-11211.		Sequences of 25nt random for SELEX.		SELEX of random 25nt with purified protein.
HuB	UUAUAUUUU	-2	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	7972035	Gao FB, Carson CC, Levine T, Keene JD. (1994) Selection of a subset of mRNAs from combinatorial 3' untranslated region libraries using neuronal RNA-binding protein Hel-N1. Proc Natl Acad Sci U S A. 91(23):11207-11211.		Sequences of 25nt random for SELEX.		SELEX of random 25nt with purified protein.
HuB	UUGUAUUGU	-2	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	7972035	Gao FB, Carson CC, Levine T, Keene JD. (1994) Selection of a subset of mRNAs from combinatorial 3' untranslated region libraries using neuronal RNA-binding protein Hel-N1. Proc Natl Acad Sci U S A. 91(23):11207-11211.		Sequences of 25nt random for SELEX.		SELEX of random 25nt with purified protein.
HuB	UUUAAUUUG	-2	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	7972035	Gao FB, Carson CC, Levine T, Keene JD. (1994) Selection of a subset of mRNAs from combinatorial 3' untranslated region libraries using neuronal RNA-binding protein Hel-N1. Proc Natl Acad Sci U S A. 91(23):11207-11211.		Sequences of 25nt random for SELEX.		SELEX of random 25nt with purified protein.
HuB	UUUGAUUUU	-2	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	7972035	Gao FB, Carson CC, Levine T, Keene JD. (1994) Selection of a subset of mRNAs from combinatorial 3' untranslated region libraries using neuronal RNA-binding protein Hel-N1. Proc Natl Acad Sci U S A. 91(23):11207-11211.		Sequences of 25nt random for SELEX.		SELEX of random 25nt with purified protein.
HuB	UUUUAAGUU	-2	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	7972035	Gao FB, Carson CC, Levine T, Keene JD. (1994) Selection of a subset of mRNAs from combinatorial 3' untranslated region libraries using neuronal RNA-binding protein Hel-N1. Proc Natl Acad Sci U S A. 91(23):11207-11211.		Sequences of 25nt random for SELEX.		SELEX of random 25nt with purified protein.
HuB	UUUUAGUUA	-2	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	7972035	Gao FB, Carson CC, Levine T, Keene JD. (1994) Selection of a subset of mRNAs from combinatorial 3' untranslated region libraries using neuronal RNA-binding protein Hel-N1. Proc Natl Acad Sci U S A. 91(23):11207-11211.		Sequences of 25nt random for SELEX.		SELEX of random 25nt with purified protein.
HuB	UUUUAUGUU	-2	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	7972035	Gao FB, Carson CC, Levine T, Keene JD. (1994) Selection of a subset of mRNAs from combinatorial 3' untranslated region libraries using neuronal RNA-binding protein Hel-N1. Proc Natl Acad Sci U S A. 91(23):11207-11211.		Sequences of 25nt random for SELEX.		SELEX of random 25nt with purified protein.
HuB	UUUUAUUGA	-2	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	7972035	Gao FB, Carson CC, Levine T, Keene JD. (1994) Selection of a subset of mRNAs from combinatorial 3' untranslated region libraries using neuronal RNA-binding protein Hel-N1. Proc Natl Acad Sci U S A. 91(23):11207-11211.		Sequences of 25nt random for SELEX.		SELEX of random 25nt with purified protein.
HuB	UUUUAUUUG	-2	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	7972035	Gao FB, Carson CC, Levine T, Keene JD. (1994) Selection of a subset of mRNAs from combinatorial 3' untranslated region libraries using neuronal RNA-binding protein Hel-N1. Proc Natl Acad Sci U S A. 91(23):11207-11211.		Sequences of 25nt random for SELEX.		SELEX of random 25nt with purified protein.
HuB	CUUUUU	-1	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	8497264	Levine TD, Gao F, King PH, Andrews LG, Keene JD. (1993) Hel-N1: an autoimmune RNA-binding protein with specificity for 3' uridylate-rich untranslated regions of growth factor mRNAs. Mol Cell Biol. 13(6):3494-3504.		Sequences of 25 nt random for SELEX.		SELEX of 25nt random sequences with recombinant protein.
HuB	CUUUUA	-2	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	8497264	Levine TD, Gao F, King PH, Andrews LG, Keene JD. (1993) Hel-N1: an autoimmune RNA-binding protein with specificity for 3' uridylate-rich untranslated regions of growth factor mRNAs. Mol Cell Biol. 13(6):3494-3504.		Sequences of 25 nt random for SELEX.		SELEX of 25nt random sequences with recombinant protein.
HuB	CUUUUUA	-5	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	8497264	Levine TD, Gao F, King PH, Andrews LG, Keene JD. (1993) Hel-N1: an autoimmune RNA-binding protein with specificity for 3' uridylate-rich untranslated regions of growth factor mRNAs. Mol Cell Biol. 13(6):3494-3504.		Sequences of 25 nt random for SELEX.		SELEX of 25nt random sequences with recombinant protein.
HuB	CUUUC	-5	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	8497264	Levine TD, Gao F, King PH, Andrews LG, Keene JD. (1993) Hel-N1: an autoimmune RNA-binding protein with specificity for 3' uridylate-rich untranslated regions of growth factor mRNAs. Mol Cell Biol. 13(6):3494-3504.		Sequences of 25 nt random for SELEX.		SELEX of 25nt random sequences with recombinant protein.
HuB	CUUUA	-5	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	8497264	Levine TD, Gao F, King PH, Andrews LG, Keene JD. (1993) Hel-N1: an autoimmune RNA-binding protein with specificity for 3' uridylate-rich untranslated regions of growth factor mRNAs. Mol Cell Biol. 13(6):3494-3504.		Sequences of 25 nt random for SELEX.		SELEX of 25nt random sequences with recombinant protein.
HuB	CUUUUUG	-1	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	8497264	Levine TD, Gao F, King PH, Andrews LG, Keene JD. (1993) Hel-N1: an autoimmune RNA-binding protein with specificity for 3' uridylate-rich untranslated regions of growth factor mRNAs. Mol Cell Biol. 13(6):3494-3504.		Sequences of 25 nt random for SELEX.		SELEX of 25nt random sequences with recombinant protein.
HuB	AUUUA	-10	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	8497264	Levine TD, Gao F, King PH, Andrews LG, Keene JD. (1993) Hel-N1: an autoimmune RNA-binding protein with specificity for 3' uridylate-rich untranslated regions of growth factor mRNAs. Mol Cell Biol. 13(6):3494-3504.		Sequences of 25 nt random for SELEX.		SELEX of 25nt random sequences with recombinant protein.
HuB	AUUUG	-9	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	8497264	Levine TD, Gao F, King PH, Andrews LG, Keene JD. (1993) Hel-N1: an autoimmune RNA-binding protein with specificity for 3' uridylate-rich untranslated regions of growth factor mRNAs. Mol Cell Biol. 13(6):3494-3504.		Sequences of 25 nt random for SELEX.		SELEX of 25nt random sequences with recombinant protein.
HuB	AUUUC	-3	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	8497264	Levine TD, Gao F, King PH, Andrews LG, Keene JD. (1993) Hel-N1: an autoimmune RNA-binding protein with specificity for 3' uridylate-rich untranslated regions of growth factor mRNAs. Mol Cell Biol. 13(6):3494-3504.		Sequences of 25 nt random for SELEX.		SELEX of 25nt random sequences with recombinant protein.
HuB	AUUUUUC	-1	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	8497264	Levine TD, Gao F, King PH, Andrews LG, Keene JD. (1993) Hel-N1: an autoimmune RNA-binding protein with specificity for 3' uridylate-rich untranslated regions of growth factor mRNAs. Mol Cell Biol. 13(6):3494-3504.		Sequences of 25 nt random for SELEX.		SELEX of 25nt random sequences with recombinant protein.
HuB	AUUUUUA	-1	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	8497264	Levine TD, Gao F, King PH, Andrews LG, Keene JD. (1993) Hel-N1: an autoimmune RNA-binding protein with specificity for 3' uridylate-rich untranslated regions of growth factor mRNAs. Mol Cell Biol. 13(6):3494-3504.		Sequences of 25 nt random for SELEX.		SELEX of 25nt random sequences with recombinant protein.
HuB	AUUUUC	-2	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	8497264	Levine TD, Gao F, King PH, Andrews LG, Keene JD. (1993) Hel-N1: an autoimmune RNA-binding protein with specificity for 3' uridylate-rich untranslated regions of growth factor mRNAs. Mol Cell Biol. 13(6):3494-3504.		Sequences of 25 nt random for SELEX.		SELEX of 25nt random sequences with recombinant protein.
HuB	AUUUUUUUA	-1	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	8497264	Levine TD, Gao F, King PH, Andrews LG, Keene JD. (1993) Hel-N1: an autoimmune RNA-binding protein with specificity for 3' uridylate-rich untranslated regions of growth factor mRNAs. Mol Cell Biol. 13(6):3494-3504.		Sequences of 25 nt random for SELEX.		SELEX of 25nt random sequences with recombinant protein.
HuB	GUUUC	-1	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	8497264	Levine TD, Gao F, King PH, Andrews LG, Keene JD. (1993) Hel-N1: an autoimmune RNA-binding protein with specificity for 3' uridylate-rich untranslated regions of growth factor mRNAs. Mol Cell Biol. 13(6):3494-3504.		Sequences of 25 nt random for SELEX.		SELEX of 25nt random sequences with recombinant protein.
HuB	GUUUUUA	-2	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	8497264	Levine TD, Gao F, King PH, Andrews LG, Keene JD. (1993) Hel-N1: an autoimmune RNA-binding protein with specificity for 3' uridylate-rich untranslated regions of growth factor mRNAs. Mol Cell Biol. 13(6):3494-3504.		Sequences of 25 nt random for SELEX.		SELEX of 25nt random sequences with recombinant protein.
HuB	GUUUUC	-2	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	8497264	Levine TD, Gao F, King PH, Andrews LG, Keene JD. (1993) Hel-N1: an autoimmune RNA-binding protein with specificity for 3' uridylate-rich untranslated regions of growth factor mRNAs. Mol Cell Biol. 13(6):3494-3504.		Sequences of 25 nt random for SELEX.		SELEX of 25nt random sequences with recombinant protein.
HuB	GUUUA	-1	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	8497264	Levine TD, Gao F, King PH, Andrews LG, Keene JD. (1993) Hel-N1: an autoimmune RNA-binding protein with specificity for 3' uridylate-rich untranslated regions of growth factor mRNAs. Mol Cell Biol. 13(6):3494-3504.		Sequences of 25 nt random for SELEX.		SELEX of 25nt random sequences with recombinant protein.
HuB	UUUUUUUUUUUUU	-5	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuB	AUUUAUUUAUUUA	-5	Gene Name and Synonymous: ELAVL2, ELAV (embryonic lethal abnormal vision Drosophila)-like 2 (Hu antigen B), HELN1, HEL-N1.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuC	AUUUAUCUACUUUCUG	-5	Gene Name and Synonymous: ELAVL3, ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C), HUC, HUCL, PLE21, MGC20653, DKFZp547J036	10079173	Sakai K, Kitagawa Y, Hirose G. (1999) Analysis of the RNA recognition motifs of human neuronal ELAV-like proteins in binding to a cytokine mRNA. Biochem Biophys Res Commun. 256(2):263-268.		Synthesized sequences		EMSA with recombinant protein
HuC	UUUUUUU	-5	Gene Name and Synonymous: ELAVL3, ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C), HUC, HUCL, PLE21, MGC20653, DKFZp547J036	10710437	King PH. (2000) RNA-binding analyses of HuC and HuD with the VEGF and c-myc 3'-untranslated regions using a novel ELISA-based assay. Nucleic Acids Res. 28(7):E20.		Homopolymers		ELISA and competition assays with recombinant protein
HuD	UUUUUUAUUUU	-5	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	17035636	Zhu H, Hasman RA, Barron VA, Luo G, Lou H. (2006) A nuclear function of Hu proteins as neuron-specific alternative RNA processing regulators. Mol Biol Cell. 17(12):5105-5114.		Construct from CALCA [796] INT3 to 3'end fused with EX1 and half of INT1 from the major late transcription unit of adenovirus		UV crosslink, immunoprecipitation, EMSA, Western blot with HeLa nuclear extracts.
HuD	AUAUUUAUAUUUUUAUUUUAUUUUUUU	-10	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	8626712	Chung S, Jiang L, Cheng S, Furneaux H. (1996) Purification and properties of HuD, a neuronal RNA-binding protein. J Biol Chem. 271(19):11518-11524.		WT and mutants A/U rich elements (ARE) of c-fos [2353] 3'UTR		EMSA, Filter Binding Assay, RNase Protection Assay.
HuD	AUACGUAUAUUUUUAUUUUAUUUUUUU	-8	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	8626712	Chung S, Jiang L, Cheng S, Furneaux H. (1996) Purification and properties of HuD, a neuronal RNA-binding protein. J Biol Chem. 271(19):11518-11524.		WT and mutants A/U rich elements (ARE) of c-fos [2353] 3'UTR		EMSA, Filter Binding Assay, RNase Protection Assay.
HuD	AUAUUUAUAUCGCUAUUUUAUUUUUUU	-7	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	8626712	Chung S, Jiang L, Cheng S, Furneaux H. (1996) Purification and properties of HuD, a neuronal RNA-binding protein. J Biol Chem. 271(19):11518-11524.		WT and mutants A/U rich elements (ARE) of c-fos [2353] 3'UTR		EMSA, Filter Binding Assay, RNase Protection Assay.
HuD	AUAUUUAUAUUUUUAUGCUAUUUUUUU	-6	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	8626712	Chung S, Jiang L, Cheng S, Furneaux H. (1996) Purification and properties of HuD, a neuronal RNA-binding protein. J Biol Chem. 271(19):11518-11524.		WT and mutants A/U rich elements (ARE) of c-fos [2353] 3'UTR		EMSA, Filter Binding Assay, RNase Protection Assay.
HuD	UCCACUUUCCUCUCUAUUUCUCUCUG	-5	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	9045688	Chung S, Eckrich M, Perrone-Bizzozero N, Kohn DT, Furneaux H. (1997) The Elav-like proteins bind to a conserved regulatory element in the 3'-untranslated region of GAP-43 mRNA. J Biol Chem. 272(10):6593-6598.		Sequences of human GAP43 [2596]		Filter binding assay, competition assay with recombinant protein
HuD	UCUUAAUUAUUAUUUGUGUUUUAAUUUAAACACCUCCUCAUG	-5	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	9685407	Joseph B, Orlian M, Furneaux H. (1998) p21(waf1) mRNA contains a conserved element in its 3'-untranslated region that is bound by the Elav-like mRNA-stabilizing proteins. J Biol Chem. 273(32):20511-20516.		Sequence deriving from CDKN1A [1026] and FOS [2353]		RNase T1 selection, nitrocellulose filter binding assay, EMSA and competition assay with recombinant protein
HuD	UUAUUUAUUUAUUUAUU	-10	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	10848602	Park S, Myszka DG, Yu M, Littler SJ, Laird-Offringa IA. (2000) HuD RNA recognition motifs play distinct roles in the formation of a stable complex with AU-rich RNA. Mol Cell Biol. 20(13):4765-4772.		Synthesized sequences		EMSA with recombinant protein
HuD	UUAUUUAUUUAUU	-4	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	10848602	Park S, Myszka DG, Yu M, Littler SJ, Laird-Offringa IA. (2000) HuD RNA recognition motifs play distinct roles in the formation of a stable complex with AU-rich RNA. Mol Cell Biol. 20(13):4765-4772.		Synthesized sequences		EMSA with recombinant protein
HuD	UUAUUUAUUU	-3	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	10848602	Park S, Myszka DG, Yu M, Littler SJ, Laird-Offringa IA. (2000) HuD RNA recognition motifs play distinct roles in the formation of a stable complex with AU-rich RNA. Mol Cell Biol. 20(13):4765-4772.		Synthesized sequences		EMSA with recombinant protein
HuD	UUUUUUU	-7	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12384599	Kasashima K, Sakashita E, Saito K, Sakamoto H. (2002) Complex formation of the neuron-specific ELAV-like Hu RNA-binding proteins. Nucleic Acids Res. 30(20):4519-4526.		Homopolymers		Homopolymer binding assay with HeLa cell extracts
HuD	AAAAAAA	-7	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12384599	Kasashima K, Sakashita E, Saito K, Sakamoto H. (2002) Complex formation of the neuron-specific ELAV-like Hu RNA-binding proteins. Nucleic Acids Res. 30(20):4519-4526.		Homopolymers		Homopolymer binding assay with HeLa cell extracts
HuD	CUUUCUUUCUUUCUUUCUUUCUUUCUUUCUUUCUUUCUUUCUUUUUUUUUUU	-5	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12605686	Wein G, Rossler M, Klug R, Herget T. (2003) The 3'-UTR of the mRNA coding for the major protein kinase C substrate MARCKS contains a novel CU-rich element interacting with the mRNA stabilizing factors HuD and HuR. Eur J Biochem. 270(2):350-365.		Sequences deriving from mouse Marcks [17118]		EMSA, UV cross-linking with recombinant protein
HuD	UUAUUUAUUUAUUUAUU	-10	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuD	UAUUUAUUUAUUUAU	-9	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuD	UAUUUAUUUAUUUA	-7	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuD	AUUUAUUUAUUUAU	-7	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuD	AUUUAUUUAUUUA	-7	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuD	UUUAUUUAUUUA	-7	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuD	AUUUAUUUAUUU	-6	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuD	UUUAUUUAUUU	-4	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuD	UUAUUUAUUUAUUUAUUUAUU	-10	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuD	UUAUUUAUUUAUUUAUUUAUUUAUU	-10	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuD	UUAUUUAUUUAUUUAUUUAUUUAUUUAUU	-10	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuD	UUAUUUAUUUAUUUAUUUAUUUAUUUAUUUAUU	-10	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuD	AUUUUUUUUUUUA	-8	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuD	UUUUAUUUAUUUU	-8	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuD	UUUUUUUUUUUUU	-10	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuD	AUUUCAUUAUUUA	-5	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuD	UGUUUCCUUUUAU	-7	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuD	UUUAUUUACUAAU	-5	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuD	UGGAUUGUAUUCA	-5	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuD	UUAUUUCCUUUAU	-7	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuD	UUUGUAUCUAAAU	-5	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuD	UGCGUGCUUGCCU	-1	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuD	UUUUAUUGCCUAA	-5	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuD	CUUGUUUGCUGUU	-5	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuD	CUACUGGCACGCA	-1	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuD	CCUACUUGUUUCU	-5	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuD	GUUGUUUGUUCUA	-5	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuD	GUUUUUUUCCUAC	-5	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuD	GUUUUUAUAUCCA	-5	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuD	AGGUUUGUGUCAG	-5	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuD	CUUUUGUUCUAGC	-5	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuD	CUUGAAUUUCUAC	-5	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuD	UUUGCAUUUUAUC	-5	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuD	GUCUUGACUUUUC	-5	Gene Name and Synonymous: ELAVL4, ELAV (embryonic lethal abnormal vision Drosophila)-like 4 (Hu antigen D), PNEM.	12900401	Park-Lee S, Kim S, Laird-Offringa IA. (2003) Characterization of the interaction between neuronal RNA-binding protein HuD and AU-rich RNA. J Biol Chem. 278(41):39801-39808.		Synthesized sequences. Sequences of 13nt random for SELEX.		SELEX of random 13nt and EMSA with recombinant protein.
HuR	AUUUA	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	9882309	Sokolowski M, Furneaux H, Schwartz S. (1999) The inhibitory activity of the AU-rich RNA element in the human papillomavirus type 1 late 3' untranslated region correlates with its affinity for the elav-like HuR protein. J Virol. 73(2):1080-1091.	HuR has no affinity to poly(A), poly(G) and poly(C).	Sequence and mutants of human Papillomavirus Type 1 Late 3' UTR h1ARE.		UV crosslink, immunoblotting with HeLa nuclear extracts, EMSA with recombinant protein.
HuR	UUUUU	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	9882309	Sokolowski M, Furneaux H, Schwartz S. (1999) The inhibitory activity of the AU-rich RNA element in the human papillomavirus type 1 late 3' untranslated region correlates with its affinity for the elav-like HuR protein. J Virol. 73(2):1080-1091.	HuR has no affinity to poly(A), poly(G) and poly(C).	Sequence and mutants of human Papillomavirus Type 1 Late 3' UTR h1ARE.		UV crosslink, immunoblotting with HeLa nuclear extracts, EMSA with recombinant protein.
HuR	AUUUAUUUAUUUAUUUA	-8	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	9155038	Myer VE, Fan XC, Steitz JA. (1997) Identification of HuR as a protein implicated in AUUUA-mediated mRNA decay. EMBO J. 16(8):2130-2139.	HuR has no affinity to (AUUU)2A, UUAUUUAUU, UAUUUAUGACCUAUUUAU, (AU3AGC)4A, (AGGU)4A, (CUUU)4C, (AU)8A, (AUU)5A.	synthesized oligos		EMSA, UV crosslink, competition assay with HeLa nuclear extracts.
HuR	AUGUAUGUAUGUAUGUA	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	9155038	Myer VE, Fan XC, Steitz JA. (1997) Identification of HuR as a protein implicated in AUUUA-mediated mRNA decay. EMBO J. 16(8):2130-2139.	HuR has no affinity to (AUUU)2A, UUAUUUAUU, UAUUUAUGACCUAUUUAU, (AU3AGC)4A, (AGGU)4A, (CUUU)4C, (AU)8A, (AUU)5A.	synthesized oligos		EMSA, UV crosslink, competition assay with HeLa nuclear extracts.
HuR	AUUUUAUUUUAUUUUA	-3	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	9155038	Myer VE, Fan XC, Steitz JA. (1997) Identification of HuR as a protein implicated in AUUUA-mediated mRNA decay. EMBO J. 16(8):2130-2139.	HuR has no affinity to (AUUU)2A, UUAUUUAUU, UAUUUAUGACCUAUUUAU, (AU3AGC)4A, (AGGU)4A, (CUUU)4C, (AU)8A, (AUU)5A.	synthesized oligos		EMSA, UV crosslink, competition assay with HeLa nuclear extracts.
HuR	UUAUUUAUUGACCUUAUUUAUU	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	9155038	Myer VE, Fan XC, Steitz JA. (1997) Identification of HuR as a protein implicated in AUUUA-mediated mRNA decay. EMBO J. 16(8):2130-2139.	HuR has no affinity to (AUUU)2A, UUAUUUAUU, UAUUUAUGACCUAUUUAU, (AU3AGC)4A, (AGGU)4A, (CUUU)4C, (AU)8A, (AUU)5A.	synthesized oligos		EMSA, UV crosslink, competition assay with HeLa nuclear extracts.
HuR	AUAUUUAUAUUUUUAUUUUAUUUUUUU	-10	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	8626503	Ma WJ, Cheng S, Campbell C, Wright A, Furneaux H. (1996) Cloning and characterization of HuR, a ubiquitously expressed Elav-like protein. J Biol Chem. 271(14):8144-8151.		WT and mutants A/U rich elements (ARE) of 3'UTR of c-fos [2353], c-myc [4609], n-myc [4613], IL-3 [3562].		EMSA, Filter Binding Assay, RNase Protection Assay.
HuR	AUACGUAUAUUUUUAUUUUAUUUUUUU	-8	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	8626503	Ma WJ, Cheng S, Campbell C, Wright A, Furneaux H. (1996) Cloning and characterization of HuR, a ubiquitously expressed Elav-like protein. J Biol Chem. 271(14):8144-8151.		WT and mutants A/U rich elements (ARE) of 3'UTR of c-fos [2353], c-myc [4609], n-myc [4613], IL-3 [3562].		EMSA, Filter Binding Assay, RNase Protection Assay.
HuR	AUAUUUAUAUCGCUAUUUUAUUUUUUU	-3	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	8626503	Ma WJ, Cheng S, Campbell C, Wright A, Furneaux H. (1996) Cloning and characterization of HuR, a ubiquitously expressed Elav-like protein. J Biol Chem. 271(14):8144-8151.		WT and mutants A/U rich elements (ARE) of 3'UTR of c-fos [2353], c-myc [4609], n-myc [4613], IL-3 [3562].		EMSA, Filter Binding Assay, RNase Protection Assay.
HuR	AUAUUUAUAUUUUUAUGCUAUUUUUUU	-3	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	8626503	Ma WJ, Cheng S, Campbell C, Wright A, Furneaux H. (1996) Cloning and characterization of HuR, a ubiquitously expressed Elav-like protein. J Biol Chem. 271(14):8144-8151.		WT and mutants A/U rich elements (ARE) of 3'UTR of c-fos [2353], c-myc [4609], n-myc [4613], IL-3 [3562].		EMSA, Filter Binding Assay, RNase Protection Assay.
HuR	UUUUUUU	-7	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	9882309	Sokolowski M, Furneaux H, Schwartz S. (1999) The inhibitory activity of the AU-rich RNA element in the human papillomavirus type 1 late 3' untranslated region correlates with its affinity for the elav-like HuR protein. J Virol. 73(2):1080-1091.	HuR has no affinity to poly(A), poly(G) and poly(C).	Sequence and mutants of human Papillomavirus Type 1 Late 3' UTR h1ARE.		UV crosslink, immunoblotting with HeLa nuclear extracts, EMSA with recombinant protein.
HuR	UAUUAAUUUAAUUAUUUAAUAAUAUUUAUAUUAAA	-1	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	15457527	Meisner NC, Hackermuller J, Uhl V, Aszodi A, Jaritz M, Auer M. (2004) mRNA openers and closers: modulating AU-rich element-controlled mRNA stability by a molecular switch in mRNA secondary structure. Chembiochem. 5(10):1432-1447.		Synthesized sequences.		2D-FIDA anisotropy with purified protein
HuR	UAUUUAUUUAUUUAUUUGUUUGUUUGUUUUAUU	-10	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	15457527	Meisner NC, Hackermuller J, Uhl V, Aszodi A, Jaritz M, Auer M. (2004) mRNA openers and closers: modulating AU-rich element-controlled mRNA stability by a molecular switch in mRNA secondary structure. Chembiochem. 5(10):1432-1447.		Synthesized sequences.		2D-FIDA anisotropy with purified protein
HuR	UAUUUAUUUAAAUAUUUAAAUUUUAUAUUUAUU	-2	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	15457527	Meisner NC, Hackermuller J, Uhl V, Aszodi A, Jaritz M, Auer M. (2004) mRNA openers and closers: modulating AU-rich element-controlled mRNA stability by a molecular switch in mRNA secondary structure. Chembiochem. 5(10):1432-1447.		Synthesized sequences.		2D-FIDA anisotropy with purified protein
HuR	AUAUUUUAAUUUAUGAGUUUUUGAUAGCUUUAUUUUUUAAGUAUUUAUAUAUUUAUAA	-7	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	15457527	Meisner NC, Hackermuller J, Uhl V, Aszodi A, Jaritz M, Auer M. (2004) mRNA openers and closers: modulating AU-rich element-controlled mRNA stability by a molecular switch in mRNA secondary structure. Chembiochem. 5(10):1432-1447.		Synthesized sequences.		2D-FIDA anisotropy with purified protein
HuR	UAUUUAUUAUUUAUGUAUUUAUUUAA	-9	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	15457527	Meisner NC, Hackermuller J, Uhl V, Aszodi A, Jaritz M, Auer M. (2004) mRNA openers and closers: modulating AU-rich element-controlled mRNA stability by a molecular switch in mRNA secondary structure. Chembiochem. 5(10):1432-1447.		Synthesized sequences.		2D-FIDA anisotropy with purified protein
HuR	AUUAUUUAUUAUUUAUUUAUUAUUUAUUUAUUUA	-10	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	15457527	Meisner NC, Hackermuller J, Uhl V, Aszodi A, Jaritz M, Auer M. (2004) mRNA openers and closers: modulating AU-rich element-controlled mRNA stability by a molecular switch in mRNA secondary structure. Chembiochem. 5(10):1432-1447.		Synthesized sequences.		2D-FIDA anisotropy with purified protein
HuR	UGUGAUUAUUUAUUAUUUAUUUAUUAUUUAUUUAUUUACAGA	-9	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	15457527	Meisner NC, Hackermuller J, Uhl V, Aszodi A, Jaritz M, Auer M. (2004) mRNA openers and closers: modulating AU-rich element-controlled mRNA stability by a molecular switch in mRNA secondary structure. Chembiochem. 5(10):1432-1447.		Synthesized sequences.		2D-FIDA anisotropy with purified protein
HuR	UGUGAUGAUUAUUUAUUAUUUAUUUAUUAUUUAUUUAUUUACAGA	-7	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	15457527	Meisner NC, Hackermuller J, Uhl V, Aszodi A, Jaritz M, Auer M. (2004) mRNA openers and closers: modulating AU-rich element-controlled mRNA stability by a molecular switch in mRNA secondary structure. Chembiochem. 5(10):1432-1447.		Synthesized sequences.		2D-FIDA anisotropy with purified protein
HuR	AUUAUUUAUUAUUUAUUUAUUAAAUAUUUAUUUA	-4	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	15457527	Meisner NC, Hackermuller J, Uhl V, Aszodi A, Jaritz M, Auer M. (2004) mRNA openers and closers: modulating AU-rich element-controlled mRNA stability by a molecular switch in mRNA secondary structure. Chembiochem. 5(10):1432-1447.		Synthesized sequences.		2D-FIDA anisotropy with purified protein
HuR	AUUUAUUUAUUUA	-9	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	15457527	Meisner NC, Hackermuller J, Uhl V, Aszodi A, Jaritz M, Auer M. (2004) mRNA openers and closers: modulating AU-rich element-controlled mRNA stability by a molecular switch in mRNA secondary structure. Chembiochem. 5(10):1432-1447.		Synthesized sequences.		2D-FIDA anisotropy with purified protein
HuR	AUUUAUUUAUUUAUUUAUUUA	-10	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	15457527	Meisner NC, Hackermuller J, Uhl V, Aszodi A, Jaritz M, Auer M. (2004) mRNA openers and closers: modulating AU-rich element-controlled mRNA stability by a molecular switch in mRNA secondary structure. Chembiochem. 5(10):1432-1447.		Synthesized sequences.		2D-FIDA anisotropy with purified protein
HuR	CUUUCUUUCUUUCUUUC	-9	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	15457527	Meisner NC, Hackermuller J, Uhl V, Aszodi A, Jaritz M, Auer M. (2004) mRNA openers and closers: modulating AU-rich element-controlled mRNA stability by a molecular switch in mRNA secondary structure. Chembiochem. 5(10):1432-1447.		Synthesized sequences.		2D-FIDA anisotropy with purified protein
HuR	UUUGUUU	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	19561594	Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol. 27(7):667-670.		Synthesized sequences		RNAcompete using recombinant protein
HuR	UUAUUUU	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	19561594	Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol. 27(7):667-670.		Synthesized sequences		RNAcompete using recombinant protein
HuR	UUUAUUU	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	19561594	Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol. 27(7):667-670.		Synthesized sequences		RNAcompete using recombinant protein
HuR	UUGUUUU	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	19561594	Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol. 27(7):667-670.		Synthesized sequences		RNAcompete using recombinant protein
HuR	UUAUUUAUU	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	10075998	Maurer F, Tierney M, Medcalf RL. (1999) An AU-rich sequence in the 3'-UTR of plasminogen activator inhibitor type 2 (PAI-2) mRNA promotes PAI-2 mRNA decay and provides a binding site for nuclear HuR. Nucleic Acids Res. 27(7):1664-1673.		Sequences deriving from SERPINB2 [5055]		EMSA supershift, mutation analysis with HT-1080 NE
HuR	UGUUUUUUUGAGAGU	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	10913178	Millard SS, Vidal A, Markus M, Koff A. (2000) A U-rich element in the 5' untranslated region is necessary for the translation of p27 mRNA. Mol Cell Biol. 20(16):5947-5959.		Sequences deriving from CDKN1B [1027]		UV cross-linking, immunoprecipitation, mutation analysis in 293T cell
HuR	UAUUUCUUGUUUGUUUGUUUGGGUAU	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	11602610	Raghavan A, Robison RL, McNabb J, Miller CR, Williams DA, Bohjanen PR. (2001) HuA and tristetraprolin are induced following T cell activation and display distinct but overlapping RNA binding specificities. J Biol Chem. 276(51):47958-47965.		Sequences deriving from 3' UTR of JUN [3725], FOS [2353], TNF [7124], CSF2 [1437], IL3 [3562], MYC [4609]		UV cross-linking, immunoprecipitation in HeLa NE
HuR	UUUUUUUUUUUUUUUUUUUUU	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	11602610	Raghavan A, Robison RL, McNabb J, Miller CR, Williams DA, Bohjanen PR. (2001) HuA and tristetraprolin are induced following T cell activation and display distinct but overlapping RNA binding specificities. J Biol Chem. 276(51):47958-47965.		Sequences deriving from 3' UTR of JUN [3725], FOS [2353], TNF [7124], CSF2 [1437], IL3 [3562], MYC [4609]		UV cross-linking, immunoprecipitation in HeLa NE
HuR	UAUUUAUAUUUUUAUUUUAUUU	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	11602610	Raghavan A, Robison RL, McNabb J, Miller CR, Williams DA, Bohjanen PR. (2001) HuA and tristetraprolin are induced following T cell activation and display distinct but overlapping RNA binding specificities. J Biol Chem. 276(51):47958-47965.		Sequences deriving from 3' UTR of JUN [3725], FOS [2353], TNF [7124], CSF2 [1437], IL3 [3562], MYC [4609]		UV cross-linking, immunoprecipitation in HeLa NE
HuR	UAUUUAUUAUUUAUUUAUUAUUUAUUUAUUUA	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	11602610	Raghavan A, Robison RL, McNabb J, Miller CR, Williams DA, Bohjanen PR. (2001) HuA and tristetraprolin are induced following T cell activation and display distinct but overlapping RNA binding specificities. J Biol Chem. 276(51):47958-47965.		Sequences deriving from 3' UTR of JUN [3725], FOS [2353], TNF [7124], CSF2 [1437], IL3 [3562], MYC [4609]		UV cross-linking, immunoprecipitation in HeLa NE
HuR	UAUUUAUUUAUGUAUGUAUGUAUUUAUUUAUUUAU	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	11602610	Raghavan A, Robison RL, McNabb J, Miller CR, Williams DA, Bohjanen PR. (2001) HuA and tristetraprolin are induced following T cell activation and display distinct but overlapping RNA binding specificities. J Biol Chem. 276(51):47958-47965.		Sequences deriving from 3' UTR of JUN [3725], FOS [2353], TNF [7124], CSF2 [1437], IL3 [3562], MYC [4609]		UV cross-linking, immunoprecipitation in HeLa NE
HuR	UUACCAUCUUUUUUUUUUCUUUA	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	11602610	Raghavan A, Robison RL, McNabb J, Miller CR, Williams DA, Bohjanen PR. (2001) HuA and tristetraprolin are induced following T cell activation and display distinct but overlapping RNA binding specificities. J Biol Chem. 276(51):47958-47965.		Sequences deriving from 3' UTR of JUN [3725], FOS [2353], TNF [7124], CSF2 [1437], IL3 [3562], MYC [4609]		UV cross-linking, immunoprecipitation in HeLa NE
HuR	UUUUAUUGUGUUUUUAAUUUAUUUAUUAAGAUGGAUUCUCAGAUAUUUAUAUUUUUAUUUUAUUUUUUU	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	11719186	Chen CY, Gherzi R, Ong SE, Chan EL, Raijmakers R, Pruijn GJ, Stoecklin G, Moroni C, Mann M, Karin M. (2001) AU binding proteins recruit the exosome to degrade ARE-containing mRNAs. Cell. 107(4):451-464.		Sequences deriving from FOS [2353]		UV crosslinking, imunoprecipitation with Jurkat extracts
HuR	CUUUCUCUCCUUUCUUUUUCUUCUUC	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	12011088	Yeap BB, Voon DC, Vivian JP, McCulloch RK, Thomson AM, Giles KM, Czyzyk-Krzeska MF, Furneaux H, Wilce MC, Wilce JA, Leedman PJ. (2002) Novel binding of HuR and poly(C)-binding protein to a conserved UC-rich motif within the 3'-untranslated region of the androgen receptor messenger RNA. J Biol Chem. 277(30):27183-27192.		Sequences deriving from AR [367]. Synthesized oligos.		Mutational analysis, UV cross-linking, Immunoprecipitation, competition assay in LNCaP extracts
HuR	CCCCCCC	-7	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	12011088	Yeap BB, Voon DC, Vivian JP, McCulloch RK, Thomson AM, Giles KM, Czyzyk-Krzeska MF, Furneaux H, Wilce MC, Wilce JA, Leedman PJ. (2002) Novel binding of HuR and poly(C)-binding protein to a conserved UC-rich motif within the 3'-untranslated region of the androgen receptor messenger RNA. J Biol Chem. 277(30):27183-27192.		Sequences deriving from AR [367]. Synthesized oligos.		Mutational analysis, UV cross-linking, Immunoprecipitation, competition assay in LNCaP extracts
HuR	CUUUCUUUCUUUCUUUCUUUCUUUCUUUCUUUCUUUCUUUCUUUUUUUUUUU	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	12605686	Wein G, Rossler M, Klug R, Herget T. (2003) The 3'-UTR of the mRNA coding for the major protein kinase C substrate MARCKS contains a novel CU-rich element interacting with the mRNA stabilizing factors HuD and HuR. Eur J Biochem. 270(2):350-365.		Sequences deriving from mouse Marcks [17118]		EMSA, UV cross-linking with recombinant protein
HuR	UCUAUUAAUUUAAUUAUUUAAUAAUAUUUAUAUUAAACUCCUUAU	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	12704185	Sengupta S, Jang BC, Wu MT, Paik JH, Furneaux H, Hla T. (2003) The RNA-binding protein HuR regulates the expression of cyclooxygenase-2. J Biol Chem. 278(27):25227-25233.		Sequences deriving from PTGS2 [5743]		RNase T1 assay with recombinant protein
HuR	CUUAAAUUCAUUUCACACAUUAAUUUUAUCUCA	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	12704185	Sengupta S, Jang BC, Wu MT, Paik JH, Furneaux H, Hla T. (2003) The RNA-binding protein HuR regulates the expression of cyclooxygenase-2. J Biol Chem. 278(27):25227-25233.		Sequences deriving from PTGS2 [5743]		RNase T1 assay with recombinant protein
HuR	UGCAUGCUGUUCCUUUUCUUUUCUUCUUUUAGCCAUUUUGC	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	12704185	Sengupta S, Jang BC, Wu MT, Paik JH, Furneaux H, Hla T. (2003) The RNA-binding protein HuR regulates the expression of cyclooxygenase-2. J Biol Chem. 278(27):25227-25233.		Sequences deriving from PTGS2 [5743]		RNase T1 assay with recombinant protein
HuR	GUGAUUAUUUAUUAUUUAUUUAUUAUUUAUUUAUUUAG	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	15809297	Fialcowitz EJ, Brewer BY, Keenan BP, Wilson GM. (2005) A hairpin-like structure within an AU-rich mRNA-destabilizing element regulates trans-factor binding selectivity and mRNA decay kinetics. J Biol Chem. 280(23):22406-22417.		Synthesized sequences		EMSA, fluorescence anisotropy with recombinant protein
HuR	UAUUUAUGUUUGCACUUGUGAUUAUUUAUUAUUUAUUUAUUAUUUAUUUAUUUACAGAUGAAUGUAUUUAUUU	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	16168373	Katsanou V, Papadaki O, Milatos S, Blackshear PJ, Anderson P, Kollias G, Kontoyiannis DL. (2005) HuR as a negative posttranscriptional modulator in inflammation. Mol Cell. 19(6):777-789.		Sequences deriving from wt and mutant TNF [7194]		EMSA with recombinant protein
HuR	UUAUUUAUAAAUCAUUUCCUUUCUUUUUUUCCCCAAAGUCAGAAUUGCUCAAAGAAAAUUAUUUAUUGUU	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	16289864	Sommer S, Cui Y, Brewer G, Fuqua SA. (2005) The c-Yes 3'-UTR contains adenine/uridine-rich elements that bind AUF1 and HuR involved in mRNA decay in breast cancer cells. J Steroid Biochem Mol Biol. 97(3):219-229.		Sequences deriving from YES1 [7525]		EMSA supershift with MDA-MB-231 protein extract and recombinant protein. UV-cross link, immunoprecipitation with MDA-MB-231 protein extracts.
HuR	UUUUUUAAAGUUUCUUGCAUUUAUUAUUCUCAAAAGUUUUUUCUAAGUUAAACAGUCAGUAUGCAAUCUUAAUAUAUGCUUUCUUUU	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	16289864	Sommer S, Cui Y, Brewer G, Fuqua SA. (2005) The c-Yes 3'-UTR contains adenine/uridine-rich elements that bind AUF1 and HuR involved in mRNA decay in breast cancer cells. J Steroid Biochem Mol Biol. 97(3):219-229.		Sequences deriving from YES1 [7525]		EMSA supershift with MDA-MB-231 protein extract and recombinant protein. UV-cross link, immunoprecipitation with MDA-MB-231 protein extracts.
HuR	UUUUUAUGUAAAACAUUUUUAGAACUCCAGUUUUCAAAUCAUGUUUGAAUCUACAUUCACUUUUUUUUGUUUUCUUUUUU	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	16289864	Sommer S, Cui Y, Brewer G, Fuqua SA. (2005) The c-Yes 3'-UTR contains adenine/uridine-rich elements that bind AUF1 and HuR involved in mRNA decay in breast cancer cells. J Steroid Biochem Mol Biol. 97(3):219-229.		Sequences deriving from YES1 [7525]		EMSA supershift with MDA-MB-231 protein extract and recombinant protein. UV-cross link, immunoprecipitation with MDA-MB-231 protein extracts.
HuR	UGAACUUUAAAGUUAUAGUUGUUUUAUAUGUU	-2	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	16787927	Pullmann R Jr, Abdelmohsen K, Lal A, Martindale JL, Ladner RD, Gorospe M. (2006) Differential stability of thymidylate synthase 3'-untranslated region polymorphic variants regulated by AUF1. J Biol Chem. 281(33):23456-23463.		Sequences deriving from wt and mutated TYMS [7298]		Pulldown assay and Western blotting in RKO whole-cell extract.
HuR	UGAACUUUAUAGUUGUUUUAUAUGUU	-2	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	16787927	Pullmann R Jr, Abdelmohsen K, Lal A, Martindale JL, Ladner RD, Gorospe M. (2006) Differential stability of thymidylate synthase 3'-untranslated region polymorphic variants regulated by AUF1. J Biol Chem. 281(33):23456-23463.		Sequences deriving from wt and mutated TYMS [7298]		Pulldown assay and Western blotting in RKO whole-cell extract.
HuR	UAUUCUUUCUGAACAGUAUUUAAGGUUUCCAAUAAAAUGUACACCCCUCAG	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	16890199	Izquierdo JM. (2006) Control of the ATP synthase beta subunit expression by RNA-binding proteins TIA-1, TIAR, and HuR. Biochem Biophys Res Commun. 348(2):703-711.		Sequences deriving from ATP5B [506]		UV cross-linking and immunoprecipitation with HeLa cellular extracts and recombinant protein.
HuR	UUUUGUUUUGGUUUUUUUUUUUUUUUUGGC	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	17548472	Dormoy-Raclet V, Menard I, Clair E, Kurban G, Mazroui R, Di Marco S, von Roretz C, Pause A, Gallouzi IE. (2007) The RNA-binding protein HuR promotes cell migration and cell invasion by stabilizing the beta-actin mRNA in a U-rich-element-dependent manner. Mol Cell Biol. 27(15):5365-5380.		Sequences deriving from ACTB [60]		EMSA supershift with HeLa cell extracts
HuR	GGGGGGUUUUUUUUUUUUUUUUUGGGGG	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	17682065	Kim HS, Kuwano Y, Zhan M, Pullmann R Jr, Mazan-Mamczarz K, Li H, Kedersha N, Anderson P, Wilce MC, Gorospe M, Wilce JA. (2007) Elucidation of a C-rich signature motif in target mRNAs of RNA-binding protein TIAR. Mol Cell Biol. 27(19):6806-6817.		Synthesized sequences		Surface plasmon resonance
HuR	UUUGUCUUCUUCUUUU	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	18463097	Izquierdo JM. (2008) Hu antigen R (HuR) functions as an alternative pre-mRNA splicing regulator of Fas apoptosis-promoting receptor on exon definition. J Biol Chem. 283(27):19077-19084.		Sequences deriving from FAS [355]. Constructs of FAS [355] EX5 - INT5 - EX6 - INT6 - EX7.	In vivo splicing in HeLa.	UV cross-linking, immunoprecipitation with HeLa NE. siRNA.
HuR	CUUUUCUGUUUAGUUUUUACUUUUUUUGUUUUGUUUUUUUA	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	18644987	Scott GK, Marx C, Berger CE, Saunders LR, Verdin E, Schafer S, Jung M, Benz CC. (2008) Destabilization of ERBB2 transcripts by targeting 3' untranslated region messenger RNA associated HuR and histone deacetylase-6. Mol Cancer Res. 6(7):1250-1258.		Sequences deriving from ERBB2 [2064]		EMSA supershift with SKBR3 cytosol extract.
HuR	CAUAAAUUAUUUUCAAGUGUAACUUAUUAACCUAUUUAUUAUUUAUGUAUUUAUUUAAGC	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	18650551	Palanisamy V, Park NJ, Wang J, Wong DT. (2008) AUF1 and HuR proteins stabilize interleukin-8 mRNA in human saliva. J Dent Res. 87(8):772-776.		Sequences deriving from IL8 [3576]		UV cross-linking, immunoprecipitation with salivary protein extracts.
HuR	GUGUUGUUUGUUGUGUAUAUGUUUGUAUGU	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	18986664	Cumming SA, Chuen-Im T, Zhang J, Graham SV. (2009) The RNA stability regulator HuR regulates L1 protein expression in vivo in differentiating cervical epithelial cells. Virology. 383(1):142-149.		Sequences deriving from HPV-16 LRE.		EMSA supershift, UV cross-linking with W12 NE or recombinant protein
HuR	GAUGCUGAUUCAUUAUUUAUCAGCCCUAUUCUUUC	-8	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	19010922	Saunus JM, French JD, Edwards SL, Beveridge DJ, Hatchell EC, Wagner SA, Stein SR, Davidson A, Simpson KJ, Francis GD, Leedman PJ, Brown MA. (2008) Posttranscriptional regulation of the breast cancer susceptibility gene BRCA1 by the RNA binding protein HuR. Cancer Res. 68(22):9469-9478.		Sequences deriving from BRCA1 [672]		EMSA supershift, UV cross-linking with HeLa protein extracts
HuR	GAAGCUGAUUCAUUAUUUAUCAGCCCUAUUCUUUC	-8	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	19010922	Saunus JM, French JD, Edwards SL, Beveridge DJ, Hatchell EC, Wagner SA, Stein SR, Davidson A, Simpson KJ, Francis GD, Leedman PJ, Brown MA. (2008) Posttranscriptional regulation of the breast cancer susceptibility gene BRCA1 by the RNA binding protein HuR. Cancer Res. 68(22):9469-9478.		Sequences deriving from BRCA1 [672]		EMSA supershift, UV cross-linking with HeLa protein extracts
HuR	GAUGCUGAGUCAUUAUUUAUCAGCCCUAUUCUUUC	-2	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	19010922	Saunus JM, French JD, Edwards SL, Beveridge DJ, Hatchell EC, Wagner SA, Stein SR, Davidson A, Simpson KJ, Francis GD, Leedman PJ, Brown MA. (2008) Posttranscriptional regulation of the breast cancer susceptibility gene BRCA1 by the RNA binding protein HuR. Cancer Res. 68(22):9469-9478.		Sequences deriving from BRCA1 [672]		EMSA supershift, UV cross-linking with HeLa protein extracts
HuR	CUAGUAGAACCUUCUUUCCUAAUCCCCUUAUCUUCAUGGAAAUGGACUGACUUUAUGCCUAUGAAGUCC	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	19151756	Woo HH, Zhou Y, Yi X, David CL, Zheng W, Gilmore-Hebert M, Kluger HM, Ulukus EC, Baker T, Stoffer JB, Chambers SK. (2009) Regulation of non-AU-rich element containing c-fms proto-oncogene expression by HuR in breast cancer. Oncogene. 28(9):1176-1186.		Sequences deriving from CSF1R [1436]		UV cross-linking with recombinant protein
HuR	CUGUAUUUAUCUGUUUAUUUAUACCUAUUUAUGUAUUUAUUUAUUGAAGUGUGAAAUU	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	19359363	Al-Ahmadi W, Al-Ghamdi M, Al-Haj L, Al-Saif M, Khabar KS. (2009) Alternative polyadenylation variants of the RNA binding protein, HuR: abundance, role of AU-rich elements and auto-Regulation. Nucleic Acids Res. 37(11):3612-3624.		Sequences deriving from ELAVL1 [1994]		EMSA supershift with HEK293 protein lysate or recombinant protein.
HuR	GCAUGCUGUUCCUUUUCUUUUCU	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	20086103	Doller A, Schlepckow K, Schwalbe H, Pfeilschifter J, Eberhardt W. (2010) Tandem phosphorylation of serines 221 and 318 by protein kinase Cdelta coordinates mRNA binding and nucleocytoplasmic shuttling of HuR. Mol Cell Biol. 30(6):1397-1410.		Sequences deriving from PTGS2 [5743]		EMSA with recombinant protein.
HuR	UCAGAUAUUUAUAUUUUUAUUUUAUUUUUUUCUACCUUGAGGUCUUUUGA	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	20459669	Ahn J, Byeon IJ, Dharmasena S, Huber K, Concel J, Gronenborn AM, Sluis-Cremer N. (2010) The RNA binding protein HuR does not interact directly with HIV-1 reverse transcriptase and does not affect reverse transcription in vitro. Retrovirology. 7:40.		Synthesized sequences		EMSA with recombinant protein
HuR	CCAUUUAUAUCAUUUUUUAUAUAUU	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	20498276	Chang N, Yi J, Guo G, Liu X, Shang Y, Tong T, Cui Q, Zhan M, Gorospe M, Wang W. (2010) HuR uses AUF1 as a cofactor to promote p16INK4 mRNA decay. Mol Cell Biol. 30(15):3875-3886.		Sequences deriving from CDKN2A [1029]		Protein affinity purification, western blotting with HeLa cytoplasmic extracts
HuR	CCAUUUAUAUCAUAAAAUAUAUAUU	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	20498276	Chang N, Yi J, Guo G, Liu X, Shang Y, Tong T, Cui Q, Zhan M, Gorospe M, Wang W. (2010) HuR uses AUF1 as a cofactor to promote p16INK4 mRNA decay. Mol Cell Biol. 30(15):3875-3886.		Sequences deriving from CDKN2A [1029]		Protein affinity purification, western blotting with HeLa cytoplasmic extracts
HuR	CCAUUUAUAUCAUUUUUAAAAAAUU	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	20498276	Chang N, Yi J, Guo G, Liu X, Shang Y, Tong T, Cui Q, Zhan M, Gorospe M, Wang W. (2010) HuR uses AUF1 as a cofactor to promote p16INK4 mRNA decay. Mol Cell Biol. 30(15):3875-3886.		Sequences deriving from CDKN2A [1029]		Protein affinity purification, western blotting with HeLa cytoplasmic extracts
HuR	CCAUUUAUAUCAUAAAAAUAUUAUU	-5	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	20498276	Chang N, Yi J, Guo G, Liu X, Shang Y, Tong T, Cui Q, Zhan M, Gorospe M, Wang W. (2010) HuR uses AUF1 as a cofactor to promote p16INK4 mRNA decay. Mol Cell Biol. 30(15):3875-3886.		Sequences deriving from CDKN2A [1029]		Protein affinity purification, western blotting with HeLa cytoplasmic extracts
HuR	GGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCC	-10	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
HuR	AAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACC	-1	Gene Name and Synonymous: ELAVL1, ELAV (embryonic lethal abnormal vision Drosophila)-like 1 (Hu antigen R), Hua, MelG, ELAV1 HuR carries bidirectional shuttling signals that serve for both nuclear localization and export (PMID:9860962).	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
KSRP	UGCAUG	-5	Gene Name and Synonymous: KHSRP, KH-type splicing regulatory protein, FBP2, FUBP2, MGC99676.	11003644	Markovtsov V, Nikolic JM, Goldman JA, Turck CW, Chou MY, Black DL. (2000) Cooperative assembly of an hnRNP complex induced by a tissue-specific homolog of polypyrimidine tract binding protein. Mol Cell Biol. 20(20):7463-7479.		Sequences from position 37 to 70 downstream murine c-src [20779] EX_N1 for EMSA and UV crosslink. Synthesized 37-mer RNA for RNA affinity purification. Construct of EX3 - INT - EX4 murine c-src for in vitro splicing.	In vitro splicing with WERI-1 extracts.	RNA affinity purification with HeLa or WERI-1 nuclear extracts. UV crosslink in HeLa and in WERI-1 extracts. EMSA with purified protein. Immunoprecipitation and Western blot.
KSRP	UUAGGGUCACACCCACCACUGGGAGAU	-5	Gene Name and Synonymous: KHSRP, KH-type splicing regulatory protein, FBP2, FUBP2, MGC99676.	19458619	Trabucchi M, Briata P, Garcia-Mayoral M, Haase AD, Filipowicz W, Ramos A, Gherzi R, Rosenfeld MG. (2009) The RNA-binding protein KSRP promotes the biogenesis of a subset of microRNAs. Nature. 459(7249):1010-1014.		MIRLET7A1 [406881], MIR21 [406991] and mutants.		EMSA with purified protein
KSRP	UUAGGGUCACACCCACCACUCCCAGAU	-5	Gene Name and Synonymous: KHSRP, KH-type splicing regulatory protein, FBP2, FUBP2, MGC99676.	19458619	Trabucchi M, Briata P, Garcia-Mayoral M, Haase AD, Filipowicz W, Ramos A, Gherzi R, Rosenfeld MG. (2009) The RNA-binding protein KSRP promotes the biogenesis of a subset of microRNAs. Nature. 459(7249):1010-1014.		MIRLET7A1 [406881], MIR21 [406991] and mutants.		EMSA with purified protein
KSRP	CUGUUGAAUCUCAUGG	-5	Gene Name and Synonymous: KHSRP, KH-type splicing regulatory protein, FBP2, FUBP2, MGC99676.	19458619	Trabucchi M, Briata P, Garcia-Mayoral M, Haase AD, Filipowicz W, Ramos A, Gherzi R, Rosenfeld MG. (2009) The RNA-binding protein KSRP promotes the biogenesis of a subset of microRNAs. Nature. 459(7249):1010-1014.		MIRLET7A1 [406881], MIR21 [406991] and mutants.		EMSA with purified protein
KSRP	CUGUUGAAUCUCAUCC	-2	Gene Name and Synonymous: KHSRP, KH-type splicing regulatory protein, FBP2, FUBP2, MGC99676.	19458619	Trabucchi M, Briata P, Garcia-Mayoral M, Haase AD, Filipowicz W, Ramos A, Gherzi R, Rosenfeld MG. (2009) The RNA-binding protein KSRP promotes the biogenesis of a subset of microRNAs. Nature. 459(7249):1010-1014.		MIRLET7A1 [406881], MIR21 [406991] and mutants.		EMSA with purified protein
KSRP	UUUUAUUGUGUUUUUAAUUUAUUUAUUAAGAUGGAUUCUCAGAUAUUUAUAUUUUUAUUUUAUUUUUUU	-5	Gene Name and Synonymous: KHSRP, KH-type splicing regulatory protein, FBP2, FUBP2, MGC99676.	11719186	Chen CY, Gherzi R, Ong SE, Chan EL, Raijmakers R, Pruijn GJ, Stoecklin G, Moroni C, Mann M, Karin M. (2001) AU binding proteins recruit the exosome to degrade ARE-containing mRNAs. Cell. 107(4):451-464.		Sequences deriving from FOS [2353]		UV crosslinking, imunoprecipitation with Jurkat extracts
KSRP	AUUUUA	-5	Gene Name and Synonymous: KHSRP, KH-type splicing regulatory protein, FBP2, FUBP2, MGC99676.	16126846	Linker K, Pautz A, Fechir M, Hubrich T, Greeve J, Kleinert H. (2005) Involvement of KSRP in the post-transcriptional regulation of human iNOS expression-complex interplay of KSRP with TTP and HuR. Nucleic Acids Res. 33(15):4813-4827.		Sequences deriving from NOS2 [4843]		UV cross-linking with recombinant protein
KSRP	CAUAAAUUAUUUUCAAGUGUAACUUAUUAACCUAUUUAUUAUUUAUGUAUUUAUUUAAGC	-10	Gene Name and Synonymous: KHSRP, KH-type splicing regulatory protein, FBP2, FUBP2, MGC99676.	17908789	Winzen R, Thakur BK, Dittrich-Breiholz O, Shah M, Redich N, Dhamija S, Kracht M, Holtmann H. (2007) Functional analysis of KSRP interaction with the AU-rich element of interleukin-8 and identification of inflammatory mRNA targets. Mol Cell Biol. 27(23):8388-8400.		Sequences deriving from IL8 [3576]		EMSA with recombinant protein
KSRP	CUAUUUAUUAUUUAUGUAUGUAUUUAAGC	-9	Gene Name and Synonymous: KHSRP, KH-type splicing regulatory protein, FBP2, FUBP2, MGC99676.	17908789	Winzen R, Thakur BK, Dittrich-Breiholz O, Shah M, Redich N, Dhamija S, Kracht M, Holtmann H. (2007) Functional analysis of KSRP interaction with the AU-rich element of interleukin-8 and identification of inflammatory mRNA targets. Mol Cell Biol. 27(23):8388-8400.		Sequences deriving from IL8 [3576]		EMSA with recombinant protein
KSRP	CUAUUUAUUAUUUAUGUAUUUAUUUAAGC	-5	Gene Name and Synonymous: KHSRP, KH-type splicing regulatory protein, FBP2, FUBP2, MGC99676.	17908789	Winzen R, Thakur BK, Dittrich-Breiholz O, Shah M, Redich N, Dhamija S, Kracht M, Holtmann H. (2007) Functional analysis of KSRP interaction with the AU-rich element of interleukin-8 and identification of inflammatory mRNA targets. Mol Cell Biol. 27(23):8388-8400.		Sequences deriving from IL8 [3576]		EMSA with recombinant protein
KSRP	UAUUUAUUAUUUAUUUAUUAUUUAU	-10	Gene Name and Synonymous: KHSRP, KH-type splicing regulatory protein, FBP2, FUBP2, MGC99676.	17437720	Garcia-Mayoral MF, Hollingworth D, Masino L, Diaz-Moreno I, Kelly G, Gherzi R, Chou CF, Chen CY, Ramos A. (2007) The structure of the C-terminal KH domains of KSRP reveals a noncanonical motif important for mRNA degradation. Structure. 15(4):485-498.		Sequences deriving from TNF [7124]		NMR and CD with recombinant protein
KSRP	UAUUUAUUAUUU	-10	Gene Name and Synonymous: KHSRP, KH-type splicing regulatory protein, FBP2, FUBP2, MGC99676.	17437720	Garcia-Mayoral MF, Hollingworth D, Masino L, Diaz-Moreno I, Kelly G, Gherzi R, Chou CF, Chen CY, Ramos A. (2007) The structure of the C-terminal KH domains of KSRP reveals a noncanonical motif important for mRNA degradation. Structure. 15(4):485-498.		Sequences deriving from TNF [7124]		NMR and CD with recombinant protein
KSRP	UAUUUA	-2	Gene Name and Synonymous: KHSRP, KH-type splicing regulatory protein, FBP2, FUBP2, MGC99676.	17437720	Garcia-Mayoral MF, Hollingworth D, Masino L, Diaz-Moreno I, Kelly G, Gherzi R, Chou CF, Chen CY, Ramos A. (2007) The structure of the C-terminal KH domains of KSRP reveals a noncanonical motif important for mRNA degradation. Structure. 15(4):485-498.		Sequences deriving from TNF [7124]		NMR and CD with recombinant protein
KSRP	UAUUAU	-2	Gene Name and Synonymous: KHSRP, KH-type splicing regulatory protein, FBP2, FUBP2, MGC99676.	17437720	Garcia-Mayoral MF, Hollingworth D, Masino L, Diaz-Moreno I, Kelly G, Gherzi R, Chou CF, Chen CY, Ramos A. (2007) The structure of the C-terminal KH domains of KSRP reveals a noncanonical motif important for mRNA degradation. Structure. 15(4):485-498.		Sequences deriving from TNF [7124]		NMR and CD with recombinant protein
KSRP	GUCUCUUCCAAUGAUUCCAUUUCAAUAUAUUCUUCUUUUUAAAGUAUUACACAUUUCCACUU	-5	Gene Name and Synonymous: KHSRP, KH-type splicing regulatory protein, FBP2, FUBP2, MGC99676.	18583400	Nechama M, Ben-Dov IZ, Briata P, Gherzi R, Naveh-Many T. (2008) The mRNA decay promoting factor K-homology splicing regulator protein post-transcriptionally determines parathyroid hormone mRNA levels. FASEB J. 22(10):3458-3468.		Sequences deriving from rat Pth [24694]		UV cross-linking, competition assay with HEK293 total extracts.
KSRP	UUGGG	-2	Gene Name and Synonymous: KHSRP, KH-type splicing regulatory protein, FBP2, FUBP2, MGC99676.	18684992	Garcia-Mayoral MF, Diaz-Moreno I, Hollingworth D, Ramos A. (2008) The sequence selectivity of KSRP explains its flexibility in the recognition of the RNA targets. Nucleic Acids Res. 36(16):5290-5296.		Synthesized oligos		NMR, scaffold-independent analysis (SIA) with recombinant protein
KSRP	UUUAG	-1	Gene Name and Synonymous: KHSRP, KH-type splicing regulatory protein, FBP2, FUBP2, MGC99676.	18684992	Garcia-Mayoral MF, Diaz-Moreno I, Hollingworth D, Ramos A. (2008) The sequence selectivity of KSRP explains its flexibility in the recognition of the RNA targets. Nucleic Acids Res. 36(16):5290-5296.		Synthesized oligos		NMR, scaffold-independent analysis (SIA) with recombinant protein
KSRP	UGGGU	-10	Gene Name and Synonymous: KHSRP, KH-type splicing regulatory protein, FBP2, FUBP2, MGC99676.	18684992	Garcia-Mayoral MF, Diaz-Moreno I, Hollingworth D, Ramos A. (2008) The sequence selectivity of KSRP explains its flexibility in the recognition of the RNA targets. Nucleic Acids Res. 36(16):5290-5296.		Synthesized oligos		NMR, scaffold-independent analysis (SIA) with recombinant protein
KSRP	UAGGG	-5	Gene Name and Synonymous: KHSRP, KH-type splicing regulatory protein, FBP2, FUBP2, MGC99676.	18684992	Garcia-Mayoral MF, Diaz-Moreno I, Hollingworth D, Ramos A. (2008) The sequence selectivity of KSRP explains its flexibility in the recognition of the RNA targets. Nucleic Acids Res. 36(16):5290-5296.		Synthesized oligos		NMR, scaffold-independent analysis (SIA) with recombinant protein
KSRP	UAGUAU	-6	Gene Name and Synonymous: KHSRP, KH-type splicing regulatory protein, FBP2, FUBP2, MGC99676.	18684992	Garcia-Mayoral MF, Diaz-Moreno I, Hollingworth D, Ramos A. (2008) The sequence selectivity of KSRP explains its flexibility in the recognition of the RNA targets. Nucleic Acids Res. 36(16):5290-5296.		Synthesized oligos		NMR, scaffold-independent analysis (SIA) with recombinant protein
KSRP	UAGGUA	-7	Gene Name and Synonymous: KHSRP, KH-type splicing regulatory protein, FBP2, FUBP2, MGC99676.	18684992	Garcia-Mayoral MF, Diaz-Moreno I, Hollingworth D, Ramos A. (2008) The sequence selectivity of KSRP explains its flexibility in the recognition of the RNA targets. Nucleic Acids Res. 36(16):5290-5296.		Synthesized oligos		NMR, scaffold-independent analysis (SIA) with recombinant protein
KSRP	GGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCC	-6	Gene Name and Synonymous: KHSRP, KH-type splicing regulatory protein, FBP2, FUBP2, MGC99676.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
KSRP	AAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACC	-4	Gene Name and Synonymous: KHSRP, KH-type splicing regulatory protein, FBP2, FUBP2, MGC99676.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
MBNL1	UGUCUCGCU	-5	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	15257297	Ho TH, Charlet-B N, Poulos MG, Singh G, Swanson MS, Cooper TA. (2004) Muscleblind proteins regulate alternative splicing. EMBO J. 23(15): 3103-3112.	MBNL1 promotes exon skipping of human and chicken cTNT EX5 and inclusion of IR EX11 in primary chicken skeletal muscle cultures.	WT and mutated RNA substrates of the human cTNT [TNNT2, 7139] and chicken cTNT [TNNT2, 396433] gene.		Mutational analysis, UV-crosslinking assay using purified recombinant protein.
MBNL1	CGCUGCGGC	-5	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	15257297	Ho TH, Charlet-B N, Poulos MG, Singh G, Swanson MS, Cooper TA. (2004) Muscleblind proteins regulate alternative splicing. EMBO J. 23(15): 3103-3112.	MBNL1 promotes exon skipping of human and chicken cTNT EX5 and inclusion of IR EX11 in primary chicken skeletal muscle cultures.	WT and mutated RNA substrates of the human cTNT [TNNT2, 7139] and chicken cTNT [TNNT2, 396433] gene.		Mutational analysis, UV-crosslinking assay using purified recombinant protein.
MBNL1	CGCUUU	-5	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	15257297	Ho TH, Charlet-B N, Poulos MG, Singh G, Swanson MS, Cooper TA. (2004) Muscleblind proteins regulate alternative splicing. EMBO J. 23(15): 3103-3112.	MBNL1 promotes exon skipping of human and chicken cTNT EX5 and inclusion of IR EX11 in primary chicken skeletal muscle cultures.	WT and mutated RNA substrates of the human cTNT [TNNT2, 7139] and chicken cTNT [TNNT2, 396433] gene.		Mutational analysis, UV-crosslinking assay using purified recombinant protein.
MBNL1	UGCUGCUUUU	-5	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	15257297	Ho TH, Charlet-B N, Poulos MG, Singh G, Swanson MS, Cooper TA. (2004) Muscleblind proteins regulate alternative splicing. EMBO J. 23(15): 3103-3112.	MBNL1 promotes exon skipping of human and chicken cTNT EX5 and inclusion of IR EX11 in primary chicken skeletal muscle cultures.	WT and mutated RNA substrates of the human cTNT [TNNT2, 7139] and chicken cTNT [TNNT2, 396433] gene.		Mutational analysis, UV-crosslinking assay using purified recombinant protein.
MBNL1	CUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUG	-6	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	14722159	Kino Y, Mori D, Oma Y, Takeshita Y, Sasagawa N, Ishiura S. (2004) Muscleblind protein, MBNL1/EXP, binds specifically to CHHG repeats. Hum. Mol. Genet. 13:495–507.		Synthesized sequences.		Yeast three-hybrid assay confirmed by EMSA using purified recombinant protein. EMSA with competing probes.
MBNL1	CCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUG	-8	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	14722159	Kino Y, Mori D, Oma Y, Takeshita Y, Sasagawa N, Ishiura S. (2004) Muscleblind protein, MBNL1/EXP, binds specifically to CHHG repeats. Hum. Mol. Genet. 13:495–507.		Synthesized sequences.		Yeast three-hybrid assay confirmed by EMSA using purified recombinant protein. EMSA with competing probes.
MBNL1	CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG	-4	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	14722159	Kino Y, Mori D, Oma Y, Takeshita Y, Sasagawa N, Ishiura S. (2004) Muscleblind protein, MBNL1/EXP, binds specifically to CHHG repeats. Hum. Mol. Genet. 13:495–507.		Synthesized sequences.		Yeast three-hybrid assay confirmed by EMSA using purified recombinant protein. EMSA with competing probes.
MBNL1	CCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCG	-4	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	14722159	Kino Y, Mori D, Oma Y, Takeshita Y, Sasagawa N, Ishiura S. (2004) Muscleblind protein, MBNL1/EXP, binds specifically to CHHG repeats. Hum. Mol. Genet. 13:495–507.		Synthesized sequences.		Yeast three-hybrid assay confirmed by EMSA using purified recombinant protein. EMSA with competing probes.
MBNL1	CCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAGCCAG	-4	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	14722159	Kino Y, Mori D, Oma Y, Takeshita Y, Sasagawa N, Ishiura S. (2004) Muscleblind protein, MBNL1/EXP, binds specifically to CHHG repeats. Hum. Mol. Genet. 13:495–507.		Synthesized sequences.		Yeast three-hybrid assay confirmed by EMSA using purified recombinant protein. EMSA with competing probes.
MBNL1	CAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAG	-6	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	14722159	Kino Y, Mori D, Oma Y, Takeshita Y, Sasagawa N, Ishiura S. (2004) Muscleblind protein, MBNL1/EXP, binds specifically to CHHG repeats. Hum. Mol. Genet. 13:495–507.		Synthesized sequences.		Yeast three-hybrid assay confirmed by EMSA using purified recombinant protein. EMSA with competing probes.
MBNL1	CUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUGCUUG	-6	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	14722159	Kino Y, Mori D, Oma Y, Takeshita Y, Sasagawa N, Ishiura S. (2004) Muscleblind protein, MBNL1/EXP, binds specifically to CHHG repeats. Hum. Mol. Genet. 13:495–507.		Synthesized sequences.		Yeast three-hybrid assay confirmed by EMSA using purified recombinant protein. EMSA with competing probes.
MBNL1	CCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCG	-8	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	14722159	Kino Y, Mori D, Oma Y, Takeshita Y, Sasagawa N, Ishiura S. (2004) Muscleblind protein, MBNL1/EXP, binds specifically to CHHG repeats. Hum. Mol. Genet. 13:495–507.		Synthesized sequences.		Yeast three-hybrid assay confirmed by EMSA using purified recombinant protein. EMSA with competing probes.
MBNL1	CAUGCAUGCAUGCAUGCAUGCAUGCAUG	-4	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	14722159	Kino Y, Mori D, Oma Y, Takeshita Y, Sasagawa N, Ishiura S. (2004) Muscleblind protein, MBNL1/EXP, binds specifically to CHHG repeats. Hum. Mol. Genet. 13:495–507.		Synthesized sequences.		Yeast three-hybrid assay confirmed by EMSA using purified recombinant protein. EMSA with competing probes.
MBNL1	CCUGCCUGCCUGUCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUG	-5	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	14722159	Kino Y, Mori D, Oma Y, Takeshita Y, Sasagawa N, Ishiura S. (2004) Muscleblind protein, MBNL1/EXP, binds specifically to CHHG repeats. Hum. Mol. Genet. 13:495–507.		Synthesized sequences.		Yeast three-hybrid assay confirmed by EMSA using purified recombinant protein. EMSA with competing probes.
MBNL1	CCUGCCUGCCUGCCUGCCUGGCUGCCUGUCUGCCUGCCUGCCUGCCUG	-5	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	14722159	Kino Y, Mori D, Oma Y, Takeshita Y, Sasagawa N, Ishiura S. (2004) Muscleblind protein, MBNL1/EXP, binds specifically to CHHG repeats. Hum. Mol. Genet. 13:495–507.		Synthesized sequences.		Yeast three-hybrid assay confirmed by EMSA using purified recombinant protein. EMSA with competing probes.
MBNL1	CUGCUGUUCGCUGCUG	-10	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	17942744	Warf MB, Berglund JA. (2007) MBNL binds similar RNA structures in the CUG repeats of myotonic dystrophy and its pre-mRNA substrate cardiac troponin T. RNA. 13(12): 2238-2251.		Synthesized sequences. WT and mutated RNA substrates of cTNT [TNNT2, 7139] gene. Construct of TNNT2 [7139] EX4 - INT4 - EX5.	In vivo splicing in HeLa cells.	EMSA using recombinant protein.
MBNL1	CUGCUGCUGUUCGCUGCUGCUG	-10	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	17942744	Warf MB, Berglund JA. (2007) MBNL binds similar RNA structures in the CUG repeats of myotonic dystrophy and its pre-mRNA substrate cardiac troponin T. RNA. 13(12): 2238-2251.		Synthesized sequences. WT and mutated RNA substrates of cTNT [TNNT2, 7139] gene. Construct of TNNT2 [7139] EX4 - INT4 - EX5.	In vivo splicing in HeLa cells.	EMSA using recombinant protein.
MBNL1	CUGCUGCUGCUGUUCGCUGCUGCUGCUG	-10	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	17942744	Warf MB, Berglund JA. (2007) MBNL binds similar RNA structures in the CUG repeats of myotonic dystrophy and its pre-mRNA substrate cardiac troponin T. RNA. 13(12): 2238-2251.		Synthesized sequences. WT and mutated RNA substrates of cTNT [TNNT2, 7139] gene. Construct of TNNT2 [7139] EX4 - INT4 - EX5.	In vivo splicing in HeLa cells.	EMSA using recombinant protein.
MBNL1	CCUGCCUGUUCGCCUGCCUG	-8	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	17942744	Warf MB, Berglund JA. (2007) MBNL binds similar RNA structures in the CUG repeats of myotonic dystrophy and its pre-mRNA substrate cardiac troponin T. RNA. 13(12): 2238-2251.		Synthesized sequences. WT and mutated RNA substrates of cTNT [TNNT2, 7139] gene. Construct of TNNT2 [7139] EX4 - INT4 - EX5.	In vivo splicing in HeLa cells.	EMSA using recombinant protein.
MBNL1	CCUGCCUGCCUGUUCGCCUGCCUGCCUG	-9	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	17942744	Warf MB, Berglund JA. (2007) MBNL binds similar RNA structures in the CUG repeats of myotonic dystrophy and its pre-mRNA substrate cardiac troponin T. RNA. 13(12): 2238-2251.		Synthesized sequences. WT and mutated RNA substrates of cTNT [TNNT2, 7139] gene. Construct of TNNT2 [7139] EX4 - INT4 - EX5.	In vivo splicing in HeLa cells.	EMSA using recombinant protein.
MBNL1	CUGCCUGCCUGUUCGCUGCCUGCCUG	-10	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	17942744	Warf MB, Berglund JA. (2007) MBNL binds similar RNA structures in the CUG repeats of myotonic dystrophy and its pre-mRNA substrate cardiac troponin T. RNA. 13(12): 2238-2251.		Synthesized sequences. WT and mutated RNA substrates of cTNT [TNNT2, 7139] gene. Construct of TNNT2 [7139] EX4 - INT4 - EX5.	In vivo splicing in HeLa cells.	EMSA using recombinant protein.
MBNL1	CCUGCCUGCCUGCCUGUUCGCCUGCCUGCCUGCCUG	-10	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	17942744	Warf MB, Berglund JA. (2007) MBNL binds similar RNA structures in the CUG repeats of myotonic dystrophy and its pre-mRNA substrate cardiac troponin T. RNA. 13(12): 2238-2251.		Synthesized sequences. WT and mutated RNA substrates of cTNT [TNNT2, 7139] gene. Construct of TNNT2 [7139] EX4 - INT4 - EX5.	In vivo splicing in HeLa cells.	EMSA using recombinant protein.
MBNL1	CCGCCGUUCGCCGCCG	-9	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	17942744	Warf MB, Berglund JA. (2007) MBNL binds similar RNA structures in the CUG repeats of myotonic dystrophy and its pre-mRNA substrate cardiac troponin T. RNA. 13(12): 2238-2251.		Synthesized sequences. WT and mutated RNA substrates of cTNT [TNNT2, 7139] gene. Construct of TNNT2 [7139] EX4 - INT4 - EX5.	In vivo splicing in HeLa cells.	EMSA using recombinant protein.
MBNL1	CUGCUGUUCGCCGCCG	-9	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	17942744	Warf MB, Berglund JA. (2007) MBNL binds similar RNA structures in the CUG repeats of myotonic dystrophy and its pre-mRNA substrate cardiac troponin T. RNA. 13(12): 2238-2251.		Synthesized sequences. WT and mutated RNA substrates of cTNT [TNNT2, 7139] gene. Construct of TNNT2 [7139] EX4 - INT4 - EX5.	In vivo splicing in HeLa cells.	EMSA using recombinant protein.
MBNL1	CCGCCGUUCGCAGCAG	-7	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	17942744	Warf MB, Berglund JA. (2007) MBNL binds similar RNA structures in the CUG repeats of myotonic dystrophy and its pre-mRNA substrate cardiac troponin T. RNA. 13(12): 2238-2251.		Synthesized sequences. WT and mutated RNA substrates of cTNT [TNNT2, 7139] gene. Construct of TNNT2 [7139] EX4 - INT4 - EX5.	In vivo splicing in HeLa cells.	EMSA using recombinant protein.
MBNL1	CAGCAGUUCGCAGCAG	-5	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	17942744	Warf MB, Berglund JA. (2007) MBNL binds similar RNA structures in the CUG repeats of myotonic dystrophy and its pre-mRNA substrate cardiac troponin T. RNA. 13(12): 2238-2251.		Synthesized sequences. WT and mutated RNA substrates of cTNT [TNNT2, 7139] gene. Construct of TNNT2 [7139] EX4 - INT4 - EX5.	In vivo splicing in HeLa cells.	EMSA using recombinant protein.
MBNL1	CAGCAGUUCGCGGCGG	-5	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	17942744	Warf MB, Berglund JA. (2007) MBNL binds similar RNA structures in the CUG repeats of myotonic dystrophy and its pre-mRNA substrate cardiac troponin T. RNA. 13(12): 2238-2251.		Synthesized sequences. WT and mutated RNA substrates of cTNT [TNNT2, 7139] gene. Construct of TNNT2 [7139] EX4 - INT4 - EX5.	In vivo splicing in HeLa cells.	EMSA using recombinant protein.
MBNL1	CGGCGGUUCGCGGCGG	-3	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	17942744	Warf MB, Berglund JA. (2007) MBNL binds similar RNA structures in the CUG repeats of myotonic dystrophy and its pre-mRNA substrate cardiac troponin T. RNA. 13(12): 2238-2251.		Synthesized sequences. WT and mutated RNA substrates of cTNT [TNNT2, 7139] gene. Construct of TNNT2 [7139] EX4 - INT4 - EX5.	In vivo splicing in HeLa cells.	EMSA using recombinant protein.
MBNL1	CGGCGGUUCGCUGCUG	-2	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	17942744	Warf MB, Berglund JA. (2007) MBNL binds similar RNA structures in the CUG repeats of myotonic dystrophy and its pre-mRNA substrate cardiac troponin T. RNA. 13(12): 2238-2251.		Synthesized sequences. WT and mutated RNA substrates of cTNT [TNNT2, 7139] gene. Construct of TNNT2 [7139] EX4 - INT4 - EX5.	In vivo splicing in HeLa cells.	EMSA using recombinant protein.
MBNL1	GUCUCGCGUUCGCGCUGCGGC	-5	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	17942744	Warf MB, Berglund JA. (2007) MBNL binds similar RNA structures in the CUG repeats of myotonic dystrophy and its pre-mRNA substrate cardiac troponin T. RNA. 13(12): 2238-2251.		Synthesized sequences. WT and mutated RNA substrates of cTNT [TNNT2, 7139] gene. Construct of TNNT2 [7139] EX4 - INT4 - EX5.	In vivo splicing in HeLa cells.	EMSA using recombinant protein.
MBNL1	GUCUCGCUGUUCGCGCUGCGGC	-10	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	17942744	Warf MB, Berglund JA. (2007) MBNL binds similar RNA structures in the CUG repeats of myotonic dystrophy and its pre-mRNA substrate cardiac troponin T. RNA. 13(12): 2238-2251.		Synthesized sequences. WT and mutated RNA substrates of cTNT [TNNT2, 7139] gene. Construct of TNNT2 [7139] EX4 - INT4 - EX5.	In vivo splicing in HeLa cells.	EMSA using recombinant protein.
MBNL1	CUGUCUCGUUCGCGCUGCGG	-5	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	17942744	Warf MB, Berglund JA. (2007) MBNL binds similar RNA structures in the CUG repeats of myotonic dystrophy and its pre-mRNA substrate cardiac troponin T. RNA. 13(12): 2238-2251.		Synthesized sequences. WT and mutated RNA substrates of cTNT [TNNT2, 7139] gene. Construct of TNNT2 [7139] EX4 - INT4 - EX5.	In vivo splicing in HeLa cells.	EMSA using recombinant protein.
MBNL1	UGUCUCGCUUUUCCCCUCCGCUGCGGC	-10	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	17942744	Warf MB, Berglund JA. (2007) MBNL binds similar RNA structures in the CUG repeats of myotonic dystrophy and its pre-mRNA substrate cardiac troponin T. RNA. 13(12): 2238-2251.		Synthesized sequences. WT and mutated RNA substrates of cTNT [TNNT2, 7139] gene. Construct of TNNT2 [7139] EX4 - INT4 - EX5.	In vivo splicing in HeLa cells.	EMSA using recombinant protein.
MBNL1	UGUCUGCUGUUUUCCCCUCCCUGCUGGC	-2	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	17942744	Warf MB, Berglund JA. (2007) MBNL binds similar RNA structures in the CUG repeats of myotonic dystrophy and its pre-mRNA substrate cardiac troponin T. RNA. 13(12): 2238-2251.		Synthesized sequences. WT and mutated RNA substrates of cTNT [TNNT2, 7139] gene. Construct of TNNT2 [7139] EX4 - INT4 - EX5.	In vivo splicing in HeLa cells.	EMSA using recombinant protein.
MBNL1	UUUCUCCCUUUUCCCCUCCCCUUCGGC	-4	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	17942744	Warf MB, Berglund JA. (2007) MBNL binds similar RNA structures in the CUG repeats of myotonic dystrophy and its pre-mRNA substrate cardiac troponin T. RNA. 13(12): 2238-2251.		Synthesized sequences. WT and mutated RNA substrates of cTNT [TNNT2, 7139] gene. Construct of TNNT2 [7139] EX4 - INT4 - EX5.	In vivo splicing in HeLa cells.	EMSA using recombinant protein.
MBNL1	UGUCUCUCUUUUCCCCUCCGCGGCGGC	-4	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	17942744	Warf MB, Berglund JA. (2007) MBNL binds similar RNA structures in the CUG repeats of myotonic dystrophy and its pre-mRNA substrate cardiac troponin T. RNA. 13(12): 2238-2251.		Synthesized sequences. WT and mutated RNA substrates of cTNT [TNNT2, 7139] gene. Construct of TNNT2 [7139] EX4 - INT4 - EX5.	In vivo splicing in HeLa cells.	EMSA using recombinant protein.
MBNL1	GCGCUUGUGC	-5	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	17702765	Yuan Y, Compton SA, Sobczak K, Stenberg MG, Thornton CA, Griffith JD, Swanson MS. (2007) Muscleblind-like 1 interacts with RNA hairpins in splicing target and pathogenic RNAs. Nucleic Acids Res. 35(16): 5474-5486.		WT and mutated RNA substrates of TNNT3 [7140] INT8.		UV-crosslinking, mutational analysis, using HEK293T lysate overexpressing recombinant protein.
MBNL1	CCUAGCCUAGCCUAGCCUAGCCUAGCCUAGCCUAGCCUAGCCUAGCCUAGCCUAGCCUAGCCUAG	-2	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	14722159	Kino Y, Mori D, Oma Y, Takeshita Y, Sasagawa N, Ishiura S. (2004) Muscleblind protein, MBNL1/EXP, binds specifically to CHHG repeats. Hum. Mol. Genet. 13:495–507.		Synthesized sequences.		Yeast three-hybrid assay confirmed by EMSA using purified recombinant protein. EMSA with competing probes.
MBNL1	CUCCUCUUCGGUGGUG	-2	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	17942744	Warf MB, Berglund JA. (2007) MBNL binds similar RNA structures in the CUG repeats of myotonic dystrophy and its pre-mRNA substrate cardiac troponin T. RNA. 13(12): 2238-2251.		Synthesized sequences. WT and mutated RNA substrates of cTNT [TNNT2, 7139] gene. Construct of TNNT2 [7139] EX4 - INT4 - EX5.	In vivo splicing in HeLa cells.	EMSA using recombinant protein.
MBNL1	CUGCUU	-10	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	UCGCUU	-8	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	UUGCUU	-7	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	CUGCUG	-4	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	UUGCUA	-3	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	ACGCUU	-3	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	CCGCUG	-3	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	UUGCCU	-3	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	CCGCUU	-3	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	AUGCUU	-2	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	CUGCUUCUGCUUCUGCUUCUGCUUCUGCUUCUGCUU	-5	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	CUGCCUCUGCCUCUGCCUCUGCCUCUGCCUCUGCCU	-5	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	CCGCUUCCGCUUCCGCUUCCGCUUCCGCUUCCGCUU	-5	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	CCUCUGCUUGCUUGCUUGCUGUUUAUGUUAAUGCGCUCGCUUGAACCCCACUGGCCC	-9	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	CCUUUAUUGUGCAUGCUUGCUUAGUCUUGUUAUUCGUUGUAUAU	-5	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	UGCCACUGCUGCUGCUUGCUGCUGCUGCGCUCGCUUCCAGUCAGGGUGGGCCGC	-8	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	GCACCUCUGCUUGCUUGCUUGCUGUUUACCUGUAUGUUAAUUCGCUCGCUUG	-10	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	GCCGAGGAGGUGGUGUGAUUGCUUGCUUUAGCGCCGUCAUUUUC	-1	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	GCGGCGGGCAGCUGUGCUUGCUGGAGAGCAGAUGCUUGCUUCACCAAU	-2	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	GGCUUU	5	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20519504	Sen S, Talukdar I, Liu Y, Tam J, Reddy S, Webster NJ. (2010) Muscleblind-like 1 (Mbnl1) promotes insulin receptor exon 11 inclusion via binding to a downstream evolutionarily conserved intronic enhancer. J Biol Chem. 285(33):25426-25437.		Sequences deriving from INSR [3643] and rat Insr [24954]. Constructs of INSR [3643] EX10 - INT10 - EX11 - INT11 - EX12.	In vivo splicing in HeLa, HepG2 and HEK293	RNA-affinity purification, western blot with HeLa NE
MBNL1	GGGAUUUAUGGGGCUUUUUA	5	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20519504	Sen S, Talukdar I, Liu Y, Tam J, Reddy S, Webster NJ. (2010) Muscleblind-like 1 (Mbnl1) promotes insulin receptor exon 11 inclusion via binding to a downstream evolutionarily conserved intronic enhancer. J Biol Chem. 285(33):25426-25437.		Sequences deriving from INSR [3643] and rat Insr [24954]. Constructs of INSR [3643] EX10 - INT10 - EX11 - INT11 - EX12.	In vivo splicing in HeLa, HepG2 and HEK293	RNA-affinity purification, western blot with HeLa NE
MBNL1	UUGCUC	-1	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	UUGCUG	-1	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	CCGCUA	-1	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	UCGCUG	-1	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	CUGCUA	-1	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	CCGCUC	-1	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	UCGCUA	-1	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	AUGCCG	-1	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	CUGCCG	-1	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	CUGCCU	-1	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	UUGCCA	-1	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	UUGCCC	-1	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	AUGCUC	-1	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	GUGCUC	-1	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	ACGCUA	-1	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	ACGCUG	-1	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	GCGCUC	-1	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	GCGCUG	-1	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	GCGCUU	-1	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	CUGCCC	-1	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	UUGCCG	-1	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	CUGCUC	-1	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	GUGCUA	-1	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	GUGCUG	-1	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	GUGCUU	-1	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	ACGCUC	-1	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	UCGCUC	-1	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	AUGCCA	-1	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	AUGCCC	-1	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	CUGCCA	-1	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20071745	Goers ES, Purcell J, Voelker RB, Gates DP, Berglund JA. (2010) MBNL1 binds GC motifs embedded in pyrimidines to regulate alternative splicing. Nucleic Acids Res. 38(7):2467-2484.		Sequences of 32nt random for SELEX. Synthesized sequences. Sequence deriving from mutated MBNL1 [4154], MBNL2 [10150], mutated ATP2A1 [487], GRIN1 [2902], INSR [3643]. Construct of PLEKHH2 [130271] EX20 - INT20 - EX21 - INT21 - EX22.	In vivo splicing in HeLa	SELEX of 32nt random and EMSA with recombinant protein.
MBNL1	CGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGG	5	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	20186122	Sellier C, Rau F, Liu Y, Tassone F, Hukema RK, Gattoni R, Schneider A, Richard S, Willemsen R, Elliott DJ, Hagerman PJ, Charlet-Berguerand N. (2010) Sam68 sequestration and partial loss of function are associated with splicing alterations in FXTAS patients. EMBO J. 29(7):1248-1261.		Sequences deriving from FMR1 [2332].		FISH/IF and immunohistochemistry in human brain (hippocampal sections) of FXTAS patients.
MBNL1	CCCGCUGCUGCUGCUGCUGCUGCUGCUGCUGCUGCGG	-5	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	24377303	Yadav AR, Mace CR, Miller BL. (2014) Examining the interactions of the splicing factor MBNL1 with target RNA sequences via a label-free, multiplex method. Anal Chem. 86(2):1067-1075.		Synthetic sequences. Sequences deriving from mouse Tnnt3 [21957].		Aqueous arrayed imaging reflectometry on a microarrayed chip, SPR using recombinant protein.
MBNL1	CCCGCUGCUGCGG	-5	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	24377303	Yadav AR, Mace CR, Miller BL. (2014) Examining the interactions of the splicing factor MBNL1 with target RNA sequences via a label-free, multiplex method. Anal Chem. 86(2):1067-1075.		Synthetic sequences. Sequences deriving from mouse Tnnt3 [21957].		Aqueous arrayed imaging reflectometry on a microarrayed chip, SPR using recombinant protein.
MBNL1	CCCGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCCUGCGG	-5	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	24377303	Yadav AR, Mace CR, Miller BL. (2014) Examining the interactions of the splicing factor MBNL1 with target RNA sequences via a label-free, multiplex method. Anal Chem. 86(2):1067-1075.		Synthetic sequences. Sequences deriving from mouse Tnnt3 [21957].		Aqueous arrayed imaging reflectometry on a microarrayed chip, SPR using recombinant protein.
MBNL1	CCCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGG	-5	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	24377303	Yadav AR, Mace CR, Miller BL. (2014) Examining the interactions of the splicing factor MBNL1 with target RNA sequences via a label-free, multiplex method. Anal Chem. 86(2):1067-1075.		Synthetic sequences. Sequences deriving from mouse Tnnt3 [21957].		Aqueous arrayed imaging reflectometry on a microarrayed chip, SPR using recombinant protein.
MBNL1	CCCGCUGCUGCUGCUGCUGCAGCAGCAGCAGCAGCGG	-5	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	24377303	Yadav AR, Mace CR, Miller BL. (2014) Examining the interactions of the splicing factor MBNL1 with target RNA sequences via a label-free, multiplex method. Anal Chem. 86(2):1067-1075.		Synthetic sequences. Sequences deriving from mouse Tnnt3 [21957].		Aqueous arrayed imaging reflectometry on a microarrayed chip, SPR using recombinant protein.
MBNL1	AUAUAUAUAUGUGCGCUUGUGCCCACAUAUAUAUA	-5	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	24377303	Yadav AR, Mace CR, Miller BL. (2014) Examining the interactions of the splicing factor MBNL1 with target RNA sequences via a label-free, multiplex method. Anal Chem. 86(2):1067-1075.		Synthetic sequences. Sequences deriving from mouse Tnnt3 [21957].		Aqueous arrayed imaging reflectometry on a microarrayed chip, SPR using recombinant protein.
MBNL1	CUGCUGCUGCUGCUGCUG	-10	Gene Name and Synonymous: MBNL1, muscleblind-like (Drosophila), EXP, MBNL, EXP35, EXP40, EXP42, KIAA0428, DKFZp686P06174. MBNL proteins can act as activators or repressors of splicing on different pre-mRNAs (PMID: 15257297). MBNLs are dsRNA binding factors that can bind CUG or CCUG repeats (PMID: 14722159).	23423380	Reddy K, Zamiri B, Stanley SY, Macgregor RB Jr, Pearson CE. (2013) The disease-associated r(GGGGCC)n repeat from the C9orf72 gene forms tract length-dependent uni- and multimolecular RNA G-quadruplex structures. J Biol Chem. 288(14):9860-9866.		Synthetic sequences.		EMSA with recombinant protein.
Nova-1	AUCACC	10	Gene Name and Synonymous: NOVA1, neuro-oncological ventral antigen 1.	10811881	Jensen KB, Musunuru K, Lewis HA, Burley SK, Darnell RB. (2000) The tetranucleotide UCAY directs the specific recognition of RNA by the nova K-homology 3 domain. Proc Natl Acad Sci U S A. 97(11): 5740-5745.		Sequences of 25-nt random.		SELEX of 25nt random with recombinant protein. EMSA and Filter Binding Assay with recombinant protein.
Nova-1	ACCACC	6	Gene Name and Synonymous: NOVA1, neuro-oncological ventral antigen 1.	10811881	Jensen KB, Musunuru K, Lewis HA, Burley SK, Darnell RB. (2000) The tetranucleotide UCAY directs the specific recognition of RNA by the nova K-homology 3 domain. Proc Natl Acad Sci U S A. 97(11): 5740-5745.		Sequences of 25-nt random.		SELEX of 25nt random with recombinant protein. EMSA and Filter Binding Assay with recombinant protein.
Nova-1	UCAUAAGUCAUAAACAU	5	Gene Name and Synonymous: NOVA1, neuro-oncological ventral antigen 1.	9154818	Buckanovich RJ, Darnell RB. (1997) The neuronal RNA binding protein Nova-1 recognizes specific RNA targets in vitro and in vivo. Mol Cell Biol. 17(6):3194-3201.		Sequences of 52 nt random for SELEX.		SELEX of 52nt random with recombinant protein. Winners and mutants confermed by Filter Binding Assays and EMSA with recombinant protein.
Nova-1	UCAUCACAUUCAU	5	Gene Name and Synonymous: NOVA1, neuro-oncological ventral antigen 1.	9154818	Buckanovich RJ, Darnell RB. (1997) The neuronal RNA binding protein Nova-1 recognizes specific RNA targets in vitro and in vivo. Mol Cell Biol. 17(6):3194-3201.		Sequences of 52 nt random for SELEX.		SELEX of 52nt random with recombinant protein. Winners and mutants confermed by Filter Binding Assays and EMSA with recombinant protein.
Nova-1	UCAUCAUUCAUUCAU	5	Gene Name and Synonymous: NOVA1, neuro-oncological ventral antigen 1.	9154818	Buckanovich RJ, Darnell RB. (1997) The neuronal RNA binding protein Nova-1 recognizes specific RNA targets in vitro and in vivo. Mol Cell Biol. 17(6):3194-3201.		Sequences of 52 nt random for SELEX.		SELEX of 52nt random with recombinant protein. Winners and mutants confermed by Filter Binding Assays and EMSA with recombinant protein.
Nova-1	UCAUCGCAUUUCAU	5	Gene Name and Synonymous: NOVA1, neuro-oncological ventral antigen 1.	9154818	Buckanovich RJ, Darnell RB. (1997) The neuronal RNA binding protein Nova-1 recognizes specific RNA targets in vitro and in vivo. Mol Cell Biol. 17(6):3194-3201.		Sequences of 52 nt random for SELEX.		SELEX of 52nt random with recombinant protein. Winners and mutants confermed by Filter Binding Assays and EMSA with recombinant protein.
Nova-1	UCAUUAACAUUCAU	5	Gene Name and Synonymous: NOVA1, neuro-oncological ventral antigen 1.	9154818	Buckanovich RJ, Darnell RB. (1997) The neuronal RNA binding protein Nova-1 recognizes specific RNA targets in vitro and in vivo. Mol Cell Biol. 17(6):3194-3201.		Sequences of 52 nt random for SELEX.		SELEX of 52nt random with recombinant protein. Winners and mutants confermed by Filter Binding Assays and EMSA with recombinant protein.
Nova-1	UCAUUCAUCGUCAU	5	Gene Name and Synonymous: NOVA1, neuro-oncological ventral antigen 1.	9154818	Buckanovich RJ, Darnell RB. (1997) The neuronal RNA binding protein Nova-1 recognizes specific RNA targets in vitro and in vivo. Mol Cell Biol. 17(6):3194-3201.		Sequences of 52 nt random for SELEX.		SELEX of 52nt random with recombinant protein. Winners and mutants confermed by Filter Binding Assays and EMSA with recombinant protein.
Nova-1	UCAUUCAUUCAU	7	Gene Name and Synonymous: NOVA1, neuro-oncological ventral antigen 1.	9154818	Buckanovich RJ, Darnell RB. (1997) The neuronal RNA binding protein Nova-1 recognizes specific RNA targets in vitro and in vivo. Mol Cell Biol. 17(6):3194-3201.		Sequences of 52 nt random for SELEX.		SELEX of 52nt random with recombinant protein. Winners and mutants confermed by Filter Binding Assays and EMSA with recombinant protein.
Nova-1	UCAUUUCAUCUACAUAUCAU	5	Gene Name and Synonymous: NOVA1, neuro-oncological ventral antigen 1.	9154818	Buckanovich RJ, Darnell RB. (1997) The neuronal RNA binding protein Nova-1 recognizes specific RNA targets in vitro and in vivo. Mol Cell Biol. 17(6):3194-3201.		Sequences of 52 nt random for SELEX.		SELEX of 52nt random with recombinant protein. Winners and mutants confermed by Filter Binding Assays and EMSA with recombinant protein.
Nova-1	UCAUUUCAUCUCAU	5	Gene Name and Synonymous: NOVA1, neuro-oncological ventral antigen 1.	9154818	Buckanovich RJ, Darnell RB. (1997) The neuronal RNA binding protein Nova-1 recognizes specific RNA targets in vitro and in vivo. Mol Cell Biol. 17(6):3194-3201.		Sequences of 52 nt random for SELEX.		SELEX of 52nt random with recombinant protein. Winners and mutants confermed by Filter Binding Assays and EMSA with recombinant protein.
Nova-1	UCAUUUCAUUUCAC	5	Gene Name and Synonymous: NOVA1, neuro-oncological ventral antigen 1.	9154818	Buckanovich RJ, Darnell RB. (1997) The neuronal RNA binding protein Nova-1 recognizes specific RNA targets in vitro and in vivo. Mol Cell Biol. 17(6):3194-3201.		Sequences of 52 nt random for SELEX.		SELEX of 52nt random with recombinant protein. Winners and mutants confermed by Filter Binding Assays and EMSA with recombinant protein.
Nova-1	UCUGGCCAUGCAUCA	5	Gene Name and Synonymous: NOVA1, neuro-oncological ventral antigen 1.	9154818	Buckanovich RJ, Darnell RB. (1997) The neuronal RNA binding protein Nova-1 recognizes specific RNA targets in vitro and in vivo. Mol Cell Biol. 17(6):3194-3201.		Sequences of 52 nt random for SELEX.		SELEX of 52nt random with recombinant protein. Winners and mutants confermed by Filter Binding Assays and EMSA with recombinant protein.
Nova-1	GGGGGGG	7	Gene Name and Synonymous: NOVA1, neuro-oncological ventral antigen 1.	8558240	Buckanovich RJ, Yang YY, Darnell RB. (1996) The onconeural antigen Nova-1 is a neuron-specific RNA-binding protein, the activity of which is inhibited by paraneoplastic antibodies. J Neurosci. 16(3):1114-1122.	Nova-1 has no affinity to poly(A).	Homopolymers		Immunoblots and Filter Binding Assay.
Nova-1	CCCCCCC	3	Gene Name and Synonymous: NOVA1, neuro-oncological ventral antigen 1.	8558240	Buckanovich RJ, Yang YY, Darnell RB. (1996) The onconeural antigen Nova-1 is a neuron-specific RNA-binding protein, the activity of which is inhibited by paraneoplastic antibodies. J Neurosci. 16(3):1114-1122.	Nova-1 has no affinity to poly(A).	Homopolymers		Immunoblots and Filter Binding Assay.
Nova-1	UUUUUUU	5	Gene Name and Synonymous: NOVA1, neuro-oncological ventral antigen 1.	8558240	Buckanovich RJ, Yang YY, Darnell RB. (1996) The onconeural antigen Nova-1 is a neuron-specific RNA-binding protein, the activity of which is inhibited by paraneoplastic antibodies. J Neurosci. 16(3):1114-1122.	Nova-1 has no affinity to poly(A).	Homopolymers		Immunoblots and Filter Binding Assay.
Nova-1	UCAUUUUCAUUUUCAUUU	5	Gene Name and Synonymous: NOVA1, neuro-oncological ventral antigen 1.	9154818	Buckanovich RJ, Darnell RB. (1997) The neuronal RNA binding protein Nova-1 recognizes specific RNA targets in vitro and in vivo. Mol Cell Biol. 17(6):3194-3201.		Sequences of 52 nt random for SELEX.		SELEX of 52nt random with recombinant protein. Winners and mutants confermed by Filter Binding Assays and EMSA with recombinant protein.
Nova-1	UCAUAAUCAUAAUCAUAA	5	Gene Name and Synonymous: NOVA1, neuro-oncological ventral antigen 1.	9154818	Buckanovich RJ, Darnell RB. (1997) The neuronal RNA binding protein Nova-1 recognizes specific RNA targets in vitro and in vivo. Mol Cell Biol. 17(6):3194-3201.		Sequences of 52 nt random for SELEX.		SELEX of 52nt random with recombinant protein. Winners and mutants confermed by Filter Binding Assays and EMSA with recombinant protein.
Nova-1	UUCAU	8	Gene Name and Synonymous: NOVA1, neuro-oncological ventral antigen 1.	17655233	Beuth B, Garcia-Mayoral MF, Taylor IA, Ramos A. (2007) Scaffold-independent analysis of RNA-protein interactions: the Nova-1 KH3-RNA complex. J Am Chem Soc. 129(33):10205-10210.		Synthesized oligos		NMR titrations using recombinant protein
Nova-1	UUCAG	8	Gene Name and Synonymous: NOVA1, neuro-oncological ventral antigen 1.	17655233	Beuth B, Garcia-Mayoral MF, Taylor IA, Ramos A. (2007) Scaffold-independent analysis of RNA-protein interactions: the Nova-1 KH3-RNA complex. J Am Chem Soc. 129(33):10205-10210.		Synthesized oligos		NMR titrations using recombinant protein
Nova-1	UGUGU	2	Gene Name and Synonymous: NOVA1, neuro-oncological ventral antigen 1.	17655233	Beuth B, Garcia-Mayoral MF, Taylor IA, Ramos A. (2007) Scaffold-independent analysis of RNA-protein interactions: the Nova-1 KH3-RNA complex. J Am Chem Soc. 129(33):10205-10210.		Synthesized oligos		NMR titrations using recombinant protein
Nova-1	AUCAUC	6	Gene Name and Synonymous: NOVA1, neuro-oncological ventral antigen 1.	10811881	Jensen KB, Musunuru K, Lewis HA, Burley SK, Darnell RB. (2000) The tetranucleotide UCAY directs the specific recognition of RNA by the nova K-homology 3 domain. Proc Natl Acad Sci U S A. 97(11): 5740-5745.		Sequences of 25-nt random.		SELEX of 25nt random with recombinant protein. EMSA and Filter Binding Assay with recombinant protein.
Nova-1	AGCACC	3	Gene Name and Synonymous: NOVA1, neuro-oncological ventral antigen 1.	10811881	Jensen KB, Musunuru K, Lewis HA, Burley SK, Darnell RB. (2000) The tetranucleotide UCAY directs the specific recognition of RNA by the nova K-homology 3 domain. Proc Natl Acad Sci U S A. 97(11): 5740-5745.		Sequences of 25-nt random.		SELEX of 25nt random with recombinant protein. EMSA and Filter Binding Assay with recombinant protein.
Nova-1	AACACC	3	Gene Name and Synonymous: NOVA1, neuro-oncological ventral antigen 1.	10811881	Jensen KB, Musunuru K, Lewis HA, Burley SK, Darnell RB. (2000) The tetranucleotide UCAY directs the specific recognition of RNA by the nova K-homology 3 domain. Proc Natl Acad Sci U S A. 97(11): 5740-5745.		Sequences of 25-nt random.		SELEX of 25nt random with recombinant protein. EMSA and Filter Binding Assay with recombinant protein.
Nova-1	AUCAAC	3	Gene Name and Synonymous: NOVA1, neuro-oncological ventral antigen 1.	10811881	Jensen KB, Musunuru K, Lewis HA, Burley SK, Darnell RB. (2000) The tetranucleotide UCAY directs the specific recognition of RNA by the nova K-homology 3 domain. Proc Natl Acad Sci U S A. 97(11): 5740-5745.		Sequences of 25-nt random.		SELEX of 25nt random with recombinant protein. EMSA and Filter Binding Assay with recombinant protein.
Nova-1	UUCAAC	6	Gene Name and Synonymous: NOVA1, neuro-oncological ventral antigen 1.	10811881	Jensen KB, Musunuru K, Lewis HA, Burley SK, Darnell RB. (2000) The tetranucleotide UCAY directs the specific recognition of RNA by the nova K-homology 3 domain. Proc Natl Acad Sci U S A. 97(11): 5740-5745.		Sequences of 25-nt random.		SELEX of 25nt random with recombinant protein. EMSA and Filter Binding Assay with recombinant protein.
Nova-1	CUCAAC	6	Gene Name and Synonymous: NOVA1, neuro-oncological ventral antigen 1.	10811881	Jensen KB, Musunuru K, Lewis HA, Burley SK, Darnell RB. (2000) The tetranucleotide UCAY directs the specific recognition of RNA by the nova K-homology 3 domain. Proc Natl Acad Sci U S A. 97(11): 5740-5745.		Sequences of 25-nt random.		SELEX of 25nt random with recombinant protein. EMSA and Filter Binding Assay with recombinant protein.
Nova-2	AUCACC	10	Gene Name and Synonymous: NOVA2, neuro-oncological ventral antigen 2, ANOVA, NOVA3.	10811881	Jensen KB, Musunuru K, Lewis HA, Burley SK, Darnell RB. (2000) The tetranucleotide UCAY directs the specific recognition of RNA by the nova K-homology 3 domain. Proc Natl Acad Sci U S A. 97(11): 5740-5745.		Sequences of 25-nt random.		SELEX of 25nt random with recombinant protein. EMSA and Filter Binding Assay with recombinant protein.
Nova-2	ACCACC	6	Gene Name and Synonymous: NOVA2, neuro-oncological ventral antigen 2, ANOVA, NOVA3.	10811881	Jensen KB, Musunuru K, Lewis HA, Burley SK, Darnell RB. (2000) The tetranucleotide UCAY directs the specific recognition of RNA by the nova K-homology 3 domain. Proc Natl Acad Sci U S A. 97(11): 5740-5745.		Sequences of 25-nt random.		SELEX of 25nt random with recombinant protein. EMSA and Filter Binding Assay with recombinant protein.
Nova-2	GAGACAU	1	Gene Name and Synonymous: NOVA2, neuro-oncological ventral antigen 2, ANOVA, NOVA3.	9789075	Yang YY, Yin GL, Darnell RB. (1998) The neuronal RNA-binding protein Nova-2 is implicated as the autoantigen targeted in POMA patients with dementia. Proc Natl Acad Sci U S A. 95(22):13254-13259.	Nova-2 has no affinity to poly(A) and poly(C).	Homopolymers for immunoblot. Sequences 52-nt random for SELEX.		SELEX of 52-nt random with protein, Filter Binding Assays. Immunoblot of homopolymers.
Nova-2	GAGUCAU	10	Gene Name and Synonymous: NOVA2, neuro-oncological ventral antigen 2, ANOVA, NOVA3.	9789075	Yang YY, Yin GL, Darnell RB. (1998) The neuronal RNA-binding protein Nova-2 is implicated as the autoantigen targeted in POMA patients with dementia. Proc Natl Acad Sci U S A. 95(22):13254-13259.	Nova-2 has no affinity to poly(A) and poly(C).	Homopolymers for immunoblot. Sequences 52-nt random for SELEX.		SELEX of 52-nt random with protein, Filter Binding Assays. Immunoblot of homopolymers.
Nova-2	GAGGCAU	1	Gene Name and Synonymous: NOVA2, neuro-oncological ventral antigen 2, ANOVA, NOVA3.	9789075	Yang YY, Yin GL, Darnell RB. (1998) The neuronal RNA-binding protein Nova-2 is implicated as the autoantigen targeted in POMA patients with dementia. Proc Natl Acad Sci U S A. 95(22):13254-13259.	Nova-2 has no affinity to poly(A) and poly(C).	Homopolymers for immunoblot. Sequences 52-nt random for SELEX.		SELEX of 52-nt random with protein, Filter Binding Assays. Immunoblot of homopolymers.
Nova-2	UUUUUUU	7	Gene Name and Synonymous: NOVA2, neuro-oncological ventral antigen 2, ANOVA, NOVA3.	9789075	Yang YY, Yin GL, Darnell RB. (1998) The neuronal RNA-binding protein Nova-2 is implicated as the autoantigen targeted in POMA patients with dementia. Proc Natl Acad Sci U S A. 95(22):13254-13259.	Nova-2 has no affinity to poly(A) and poly(C).	Homopolymers for immunoblot. Sequences 52-nt random for SELEX.		SELEX of 52-nt random with protein, Filter Binding Assays. Immunoblot of homopolymers.
Nova-2	GGGGGGG	7	Gene Name and Synonymous: NOVA2, neuro-oncological ventral antigen 2, ANOVA, NOVA3.	9789075	Yang YY, Yin GL, Darnell RB. (1998) The neuronal RNA-binding protein Nova-2 is implicated as the autoantigen targeted in POMA patients with dementia. Proc Natl Acad Sci U S A. 95(22):13254-13259.	Nova-2 has no affinity to poly(A) and poly(C).	Homopolymers for immunoblot. Sequences 52-nt random for SELEX.		SELEX of 52-nt random with protein, Filter Binding Assays. Immunoblot of homopolymers.
Nova-2	AUCAC	5	Gene Name and Synonymous: NOVA2, neuro-oncological ventral antigen 2, ANOVA, NOVA3.	10676814	Lewis HA, Musunuru K, Jensen KB, Edo C, Chen H, Darnell RB, Burley SK. (2000) Sequence-specific RNA binding by a Nova KH domain: implications for paraneoplastic disease and the fragile X syndrome. Cell. 100(3):323-332.		Synthesized sequences		X-ray crystallography with recombinant protein.
Nova-2	AUCAUC	6	Gene Name and Synonymous: NOVA2, neuro-oncological ventral antigen 2, ANOVA, NOVA3.	10811881	Jensen KB, Musunuru K, Lewis HA, Burley SK, Darnell RB. (2000) The tetranucleotide UCAY directs the specific recognition of RNA by the nova K-homology 3 domain. Proc Natl Acad Sci U S A. 97(11): 5740-5745.		Sequences of 25-nt random.		SELEX of 25nt random with recombinant protein. EMSA and Filter Binding Assay with recombinant protein.
Nova-2	AGCACC	3	Gene Name and Synonymous: NOVA2, neuro-oncological ventral antigen 2, ANOVA, NOVA3.	10811881	Jensen KB, Musunuru K, Lewis HA, Burley SK, Darnell RB. (2000) The tetranucleotide UCAY directs the specific recognition of RNA by the nova K-homology 3 domain. Proc Natl Acad Sci U S A. 97(11): 5740-5745.		Sequences of 25-nt random.		SELEX of 25nt random with recombinant protein. EMSA and Filter Binding Assay with recombinant protein.
Nova-2	AACACC	3	Gene Name and Synonymous: NOVA2, neuro-oncological ventral antigen 2, ANOVA, NOVA3.	10811881	Jensen KB, Musunuru K, Lewis HA, Burley SK, Darnell RB. (2000) The tetranucleotide UCAY directs the specific recognition of RNA by the nova K-homology 3 domain. Proc Natl Acad Sci U S A. 97(11): 5740-5745.		Sequences of 25-nt random.		SELEX of 25nt random with recombinant protein. EMSA and Filter Binding Assay with recombinant protein.
Nova-2	AUCAAC	3	Gene Name and Synonymous: NOVA2, neuro-oncological ventral antigen 2, ANOVA, NOVA3.	10811881	Jensen KB, Musunuru K, Lewis HA, Burley SK, Darnell RB. (2000) The tetranucleotide UCAY directs the specific recognition of RNA by the nova K-homology 3 domain. Proc Natl Acad Sci U S A. 97(11): 5740-5745.		Sequences of 25-nt random.		SELEX of 25nt random with recombinant protein. EMSA and Filter Binding Assay with recombinant protein.
Nova-2	UUCAAC	6	Gene Name and Synonymous: NOVA2, neuro-oncological ventral antigen 2, ANOVA, NOVA3.	10811881	Jensen KB, Musunuru K, Lewis HA, Burley SK, Darnell RB. (2000) The tetranucleotide UCAY directs the specific recognition of RNA by the nova K-homology 3 domain. Proc Natl Acad Sci U S A. 97(11): 5740-5745.		Sequences of 25-nt random.		SELEX of 25nt random with recombinant protein. EMSA and Filter Binding Assay with recombinant protein.
Nova-2	CUCAAC	6	Gene Name and Synonymous: NOVA2, neuro-oncological ventral antigen 2, ANOVA, NOVA3.	10811881	Jensen KB, Musunuru K, Lewis HA, Burley SK, Darnell RB. (2000) The tetranucleotide UCAY directs the specific recognition of RNA by the nova K-homology 3 domain. Proc Natl Acad Sci U S A. 97(11): 5740-5745.		Sequences of 25-nt random.		SELEX of 25nt random with recombinant protein. EMSA and Filter Binding Assay with recombinant protein.
nPTB	CUCUCU	-5	Gene Name and Synonymous: PTBP2, polypyrimidine tract binding protein 2, PTBLP, brPTB, nPTB5, nPTB6, nPTB7, nPTB8, FLJ34897. nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	11003644	Markovtsov V, Nikolic JM, Goldman JA, Turck CW, Chou MY, Black DL. (2000) Cooperative assembly of an hnRNP complex induced by a tissue-specific homolog of polypyrimidine tract binding protein. Mol Cell Biol. 20(20):7463-7479.		Sequences from position 37 to 70 downstream murine c-src [20779] EX_N1 for EMSA and UV crosslink. Synthesized 37-mer RNA for RNA affinity purification. Construct of EX3 - INT - EX4 murine c-src for in vitro splicing.	In vitro splicing with WERI-1 extracts.	RNA affinity purification with HeLa or WERI-1 nuclear extracts. UV crosslink in HeLa and in WERI-1 extracts. EMSA with purified protein. Immunoprecipitation and Western blot.
nPTB	CUGAGGCUGCCCGCUGCUCUCUGCAUGUGCUUCCU	-5	Gene Name and Synonymous: PTBP2, polypyrimidine tract binding protein 2, PTBLP, brPTB, nPTB5, nPTB6, nPTB7, nPTB8, FLJ34897. nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	11571276	Caputi M, Zahler AM. (2001) Determination of the RNA Binding Specificity of the Heterogeneous Nuclear Ribonucleoprotein (hnRNP) H/H'/F/2H9 Family. J Biol Chem. 276(47): 43850-43859.		Synthesized oligos, constructs of Rev-dependent export (p17gag INS), beta-tropomyosin TPM2 [7169], c-src [20779].		RNA affinity binding assays, immunoblot with WT HeLa nuclear extracts or depleted by RNA affinity chromatography.
nPTB	UUUAGUCAGCCUUAUAGCUAA	-5	Gene Name and Synonymous: PTBP2, polypyrimidine tract binding protein 2, PTBLP, brPTB, nPTB5, nPTB6, nPTB7, nPTB8, FLJ34897. nPTB functionally compensates for PTB and is upregulated when PTB is removed (PMID:17679092).	22434879	Zubovic L, Baralle M, Baralle FE. (2012) Mutually exclusive splicing regulates the Nav 1.6 sodium channel function through a combinatorial mechanism that involves three distinct splicing regulatory elements and their ligands. Nucleic Acids Res. 40(13):6255-6269.		Sequences deriving from SCN8A [6334]. Constructs of wt or mutated SCN8A [6334] EX17 - INT17 - EX18N - INT18 - EX18A - INT18 - EX19	In vivo splicing in HeLa	Pulldown, mass spectrophotometry, western blot and siRNA knockdown with HeLa.
PSF	UUUUUUU	-7	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	8449401	Patton JG, Porro EB, Galceran J, Tempst P, Nadal-Ginard B. (1993) Cloning and characterization of PSF, a novel pre-mRNA splicing factor. Genes Dev. 7(3):393-406.	PSF has no affinity to poly(rA), poly(rC) and poly(rG).	Construct of tropomyosin 1 alpha TPM1 [7168] EX2 - INT2 - EX3 for splicing. Construct of branchpoint and polypyrimidine tract element upstream of TPM1 EX3 for UV-crosslink.	In vitro splicing in HeLa nuclear extracts.	RNA affinity chromatography confirmed by UV crosslink and Western blot using HeLa nuclear extracts.
PSF	CACUGCAUUCUCACCCGCAAGCA	-5	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	17664280	Melton AA, Jackson J, Wang J, Lynch KW. (2007) Combinatorial control of signal-induced exon repression by hnRNP L and PSF. Mol Cell Biol. 27(19): 6972-6984.	In this context, hnRNP K, hnRNP D, hnRNP A1, hnRNP A2/B1 do no bind CACUGGAUUCUCACCGGAAGUA and hnRNP A1, hnRNP A2/B1 do no bind CACUGCAUUCUCACCGCAAGCA.	Synthesized sequences. Construct CD45 [PTPRC, 5788] EX3 - INT - EX4 - INT - EX7.	In vitro splicing in JSL1 nuclear extract.	Western blotting analysis of direct RNA affinity purifications of JSL1 nuclear extract.
PSF	CACUGGAUUCUCACCCGGAAGUA	-2	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	17664280	Melton AA, Jackson J, Wang J, Lynch KW. (2007) Combinatorial control of signal-induced exon repression by hnRNP L and PSF. Mol Cell Biol. 27(19): 6972-6984.	In this context, hnRNP K, hnRNP D, hnRNP A1, hnRNP A2/B1 do no bind CACUGGAUUCUCACCGGAAGUA and hnRNP A1, hnRNP A2/B1 do no bind CACUGCAUUCUCACCGCAAGCA.	Synthesized sequences. Construct CD45 [PTPRC, 5788] EX3 - INT - EX4 - INT - EX7.	In vitro splicing in JSL1 nuclear extract.	Western blotting analysis of direct RNA affinity purifications of JSL1 nuclear extract.
PSF	AAGGACC	-2	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	12403470	Peng R, Dye BT, Perez I, Barnard DC, Thompson AB, Patton JG. (2002) PSF and p54nrb bind a conserved stem in U5 snRNA. RNA. 8(10):1334-1347.		Sequences of 20nt random for SELEX.		SELEX of random 20nt with recombinant protein.
PSF	AGAGGAA	-2	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	12403470	Peng R, Dye BT, Perez I, Barnard DC, Thompson AB, Patton JG. (2002) PSF and p54nrb bind a conserved stem in U5 snRNA. RNA. 8(10):1334-1347.		Sequences of 20nt random for SELEX.		SELEX of random 20nt with recombinant protein.
PSF	AGAGGUA	-2	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	12403470	Peng R, Dye BT, Perez I, Barnard DC, Thompson AB, Patton JG. (2002) PSF and p54nrb bind a conserved stem in U5 snRNA. RNA. 8(10):1334-1347.		Sequences of 20nt random for SELEX.		SELEX of random 20nt with recombinant protein.
PSF	GAAGAGGAA	-6	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	12403470	Peng R, Dye BT, Perez I, Barnard DC, Thompson AB, Patton JG. (2002) PSF and p54nrb bind a conserved stem in U5 snRNA. RNA. 8(10):1334-1347.		Sequences of 20nt random for SELEX.		SELEX of random 20nt with recombinant protein.
PSF	GAGAGGA	-10	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	12403470	Peng R, Dye BT, Perez I, Barnard DC, Thompson AB, Patton JG. (2002) PSF and p54nrb bind a conserved stem in U5 snRNA. RNA. 8(10):1334-1347.		Sequences of 20nt random for SELEX.		SELEX of random 20nt with recombinant protein.
PSF	GGACUGGGA	-2	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	12403470	Peng R, Dye BT, Perez I, Barnard DC, Thompson AB, Patton JG. (2002) PSF and p54nrb bind a conserved stem in U5 snRNA. RNA. 8(10):1334-1347.		Sequences of 20nt random for SELEX.		SELEX of random 20nt with recombinant protein.
PSF	GGAGGAAC	-2	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	12403470	Peng R, Dye BT, Perez I, Barnard DC, Thompson AB, Patton JG. (2002) PSF and p54nrb bind a conserved stem in U5 snRNA. RNA. 8(10):1334-1347.		Sequences of 20nt random for SELEX.		SELEX of random 20nt with recombinant protein.
PSF	GGAGGG	-2	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	12403470	Peng R, Dye BT, Perez I, Barnard DC, Thompson AB, Patton JG. (2002) PSF and p54nrb bind a conserved stem in U5 snRNA. RNA. 8(10):1334-1347.		Sequences of 20nt random for SELEX.		SELEX of random 20nt with recombinant protein.
PSF	GGGGGGGAUC	-6	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	12403470	Peng R, Dye BT, Perez I, Barnard DC, Thompson AB, Patton JG. (2002) PSF and p54nrb bind a conserved stem in U5 snRNA. RNA. 8(10):1334-1347.		Sequences of 20nt random for SELEX.		SELEX of random 20nt with recombinant protein.
PSF	GGUAAGAGC	-2	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	12403470	Peng R, Dye BT, Perez I, Barnard DC, Thompson AB, Patton JG. (2002) PSF and p54nrb bind a conserved stem in U5 snRNA. RNA. 8(10):1334-1347.		Sequences of 20nt random for SELEX.		SELEX of random 20nt with recombinant protein.
PSF	UAAGGGAUC	-2	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	12403470	Peng R, Dye BT, Perez I, Barnard DC, Thompson AB, Patton JG. (2002) PSF and p54nrb bind a conserved stem in U5 snRNA. RNA. 8(10):1334-1347.		Sequences of 20nt random for SELEX.		SELEX of random 20nt with recombinant protein.
PSF	UAGAGAGG	-2	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	12403470	Peng R, Dye BT, Perez I, Barnard DC, Thompson AB, Patton JG. (2002) PSF and p54nrb bind a conserved stem in U5 snRNA. RNA. 8(10):1334-1347.		Sequences of 20nt random for SELEX.		SELEX of random 20nt with recombinant protein.
PSF	UAGAUCGGAA	-2	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	12403470	Peng R, Dye BT, Perez I, Barnard DC, Thompson AB, Patton JG. (2002) PSF and p54nrb bind a conserved stem in U5 snRNA. RNA. 8(10):1334-1347.		Sequences of 20nt random for SELEX.		SELEX of random 20nt with recombinant protein.
PSF	UAGGGGGAC	-2	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	12403470	Peng R, Dye BT, Perez I, Barnard DC, Thompson AB, Patton JG. (2002) PSF and p54nrb bind a conserved stem in U5 snRNA. RNA. 8(10):1334-1347.		Sequences of 20nt random for SELEX.		SELEX of random 20nt with recombinant protein.
PSF	UCUAAGGAA	-2	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	12403470	Peng R, Dye BT, Perez I, Barnard DC, Thompson AB, Patton JG. (2002) PSF and p54nrb bind a conserved stem in U5 snRNA. RNA. 8(10):1334-1347.		Sequences of 20nt random for SELEX.		SELEX of random 20nt with recombinant protein.
PSF	UGCAGGCA	-2	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	12403470	Peng R, Dye BT, Perez I, Barnard DC, Thompson AB, Patton JG. (2002) PSF and p54nrb bind a conserved stem in U5 snRNA. RNA. 8(10):1334-1347.		Sequences of 20nt random for SELEX.		SELEX of random 20nt with recombinant protein.
PSF	UGGAAGAAC	-2	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	12403470	Peng R, Dye BT, Perez I, Barnard DC, Thompson AB, Patton JG. (2002) PSF and p54nrb bind a conserved stem in U5 snRNA. RNA. 8(10):1334-1347.		Sequences of 20nt random for SELEX.		SELEX of random 20nt with recombinant protein.
PSF	UGGAGGAC	-2	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	12403470	Peng R, Dye BT, Perez I, Barnard DC, Thompson AB, Patton JG. (2002) PSF and p54nrb bind a conserved stem in U5 snRNA. RNA. 8(10):1334-1347.		Sequences of 20nt random for SELEX.		SELEX of random 20nt with recombinant protein.
PSF	UGGCAGGGGGAUC	-2	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	12403470	Peng R, Dye BT, Perez I, Barnard DC, Thompson AB, Patton JG. (2002) PSF and p54nrb bind a conserved stem in U5 snRNA. RNA. 8(10):1334-1347.		Sequences of 20nt random for SELEX.		SELEX of random 20nt with recombinant protein.
PSF	UGGUCUGGAGC	-2	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	12403470	Peng R, Dye BT, Perez I, Barnard DC, Thompson AB, Patton JG. (2002) PSF and p54nrb bind a conserved stem in U5 snRNA. RNA. 8(10):1334-1347.		Sequences of 20nt random for SELEX.		SELEX of random 20nt with recombinant protein.
PSF	UUGAAGCAA	-2	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	12403470	Peng R, Dye BT, Perez I, Barnard DC, Thompson AB, Patton JG. (2002) PSF and p54nrb bind a conserved stem in U5 snRNA. RNA. 8(10):1334-1347.		Sequences of 20nt random for SELEX.		SELEX of random 20nt with recombinant protein.
PSF	UUGUUUGAUUUCUUAAAGU	-2	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	17507659	Hall-Pogar T, Liang S, Hague LK, Lutz CS. (2007) Specific trans-acting proteins interact with auxiliary RNA polyadenylation elements in the COX-2 3'-UTR. RNA. 13(7):1103-1115.		Sequences deriving from PTGS2 [5743]		Western blot with HeLa NE
PSF	UUAUUAUUUAUUAUUUAUUUAUUAUUUAUUUAUUU	-4	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	17965020	Buxade M, Morrice N, Krebs DL, Proud CG. (2008) The PSF.p54nrb complex is a novel Mnk substrate that binds the mRNA for tumor necrosis factor alpha. J Biol Chem. 283(1):57-65.		Sequences deriving from FOS [2353], PTGS2 [5743] and mouse Tnf [21926], Csf2 [12981], Ifng [15978].		Pull-down, western blot with Jurkat extracts.
PSF	UUUUUAAAUAUUUAUUUAUUUAUUUAUUUAUUUU	-4	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	17965020	Buxade M, Morrice N, Krebs DL, Proud CG. (2008) The PSF.p54nrb complex is a novel Mnk substrate that binds the mRNA for tumor necrosis factor alpha. J Biol Chem. 283(1):57-65.		Sequences deriving from FOS [2353], PTGS2 [5743] and mouse Tnf [21926], Csf2 [12981], Ifng [15978].		Pull-down, western blot with Jurkat extracts.
PSF	GUUUUUAAUUUAUUUAUUAAGAUGGAUUCU	-4	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	17965020	Buxade M, Morrice N, Krebs DL, Proud CG. (2008) The PSF.p54nrb complex is a novel Mnk substrate that binds the mRNA for tumor necrosis factor alpha. J Biol Chem. 283(1):57-65.		Sequences deriving from FOS [2353], PTGS2 [5743] and mouse Tnf [21926], Csf2 [12981], Ifng [15978].		Pull-down, western blot with Jurkat extracts.
PSF	AAACCUAUUUAUUAAUAUUUAAAACUAUUUAUAUG	-4	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	17965020	Buxade M, Morrice N, Krebs DL, Proud CG. (2008) The PSF.p54nrb complex is a novel Mnk substrate that binds the mRNA for tumor necrosis factor alpha. J Biol Chem. 283(1):57-65.		Sequences deriving from FOS [2353], PTGS2 [5743] and mouse Tnf [21926], Csf2 [12981], Ifng [15978].		Pull-down, western blot with Jurkat extracts.
PSF	CUAAUGAUCAUAUUUAUUUAUUUAUAUGAACCAUG	-4	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	17965020	Buxade M, Morrice N, Krebs DL, Proud CG. (2008) The PSF.p54nrb complex is a novel Mnk substrate that binds the mRNA for tumor necrosis factor alpha. J Biol Chem. 283(1):57-65.		Sequences deriving from FOS [2353], PTGS2 [5743] and mouse Tnf [21926], Csf2 [12981], Ifng [15978].		Pull-down, western blot with Jurkat extracts.
PSF	CCACGCACGCAGACUCGCAGACGCCCUCUGCUGGAACUGACACGCAGACAUUCAGCGGCU	-5	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	20122404	Motta-Mena LB, Heyd F, Lynch KW. (2010) Context-dependent regulatory mechanism of the splicing factor hnRNP L. Mol Cell. 37(2):223-234.		Constructs of wt or mutated PTPRC [5788] EX3 - INT3 - EX4 - INT4 - EX7 and EX3 - INT3 - EX5 - INT5 - EX7.	In vitro splicing in JSL1 NE	Mutational analysis. EMSA with recombinant proteins or JSL1 NE. Pull-down and western blotting with JSL1 NE.
PSF	GAAGGA	5	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	24632473	Cho S, Moon H, Loh TJ, Oh HK, Williams DR, Liao DJ, Zhou J, Green MR, Zheng X, Shen H. (2014) PSF contacts exon 7 of SMN2 pre-mRNA to promote exon 7 inclusion. Biochim Biophys Acta.		Construct of wt and mutant SMN2 [6607] EX6 - INT6 - EX7 - INT7 - EX8	In vivo splicing in 293A, C33A, SH-SY5Y along with PSF expression vector	RNA pulldown assay in HeLa nuclear extracts. In vivo splicing with deletion and mutation analysis.
PSF	GGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCC	-10	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
PSF	AAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACC	-1	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
PSF	GAGGGAAC	-2	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	12403470	Peng R, Dye BT, Perez I, Barnard DC, Thompson AB, Patton JG. (2002) PSF and p54nrb bind a conserved stem in U5 snRNA. RNA. 8(10):1334-1347.		Sequences of 20nt random for SELEX.		SELEX of random 20nt with recombinant protein.
PSF	GAGAGGAA	-2	Gene Name and Synonymous: SFPQ, splicing factor proline/glutamine-rich (polypyrimidine tract binding protein associated), POMP100.	12403470	Peng R, Dye BT, Perez I, Barnard DC, Thompson AB, Patton JG. (2002) PSF and p54nrb bind a conserved stem in U5 snRNA. RNA. 8(10):1334-1347.		Sequences of 20nt random for SELEX.		SELEX of random 20nt with recombinant protein.
QKI	CGGGGGCCUCAGUGUGCCAGCCUCCGGGCCCUAGCUGGGCUUCGGGGUUGGUG	-5	Gene Name and Synonymous: QKI, QKI KH domain containing RNA binding, QK, Hqk, QK1, QK3, hqkI, DKFZp586I0923. QKI induces exon skipping [11917126]	11917126	Wu JI, Reed RB, Grabowski PJ, Artzt K. (2002) Function of quaking in myelination: regulation of alternative splicing. Proc Natl Acad Sci U S A. 99(7):4233-4238.		Sequences deriving from mouse Mag [17136].		EMSA supershift, competition assay, UV cross-linking with HeLa NE.
QKI	AUUAAC	-10	Gene Name and Synonymous: QKI, QKI KH domain containing RNA binding, QK, Hqk, QK1, QK3, hqkI, DKFZp586I0923. QKI induces exon skipping [11917126]	24722255	Zong FY, Fu X, Wei WJ, Luo YG, Heiner M, Cao LJ, Fang Z, Fang R, Lu D, Ji H, Hui J. (2014) The RNA-Binding Protein QKI Suppresses Cancer-Associated Aberrant Splicing. PLoS Genet. 10(4):e1004289.		Construct of wt and mutant NUMB [8650] EX11 - INT11 - EX12 - INT12 - EX13. Constructs of wt and mutant Ad2 MINX EX1 - INT1 - EX2	In vivo splicing in HEK-293 along with QKI expression vector. In vitro splicing assays in HeLa nuclear extracts and recombinant protein.	EMSA with WT and mutated sequences and UV crosslinking with recombinant protein
QKI	CUAAU	-10	Gene Name and Synonymous: QKI, QKI KH domain containing RNA binding, QK, Hqk, QK1, QK3, hqkI, DKFZp586I0923. QKI induces exon skipping [11917126]	24722255	Zong FY, Fu X, Wei WJ, Luo YG, Heiner M, Cao LJ, Fang Z, Fang R, Lu D, Ji H, Hui J. (2014) The RNA-Binding Protein QKI Suppresses Cancer-Associated Aberrant Splicing. PLoS Genet. 10(4):e1004289.		Construct of wt and mutant NUMB [8650] EX11 - INT11 - EX12 - INT12 - EX13. Constructs of wt and mutant Ad2 MINX EX1 - INT1 - EX2	In vivo splicing in HEK-293 along with QKI expression vector. In vitro splicing assays in HeLa nuclear extracts and recombinant protein.	EMSA with WT and mutated sequences and UV crosslinking with recombinant protein
QKI	CGAGU	-3	Gene Name and Synonymous: QKI, QKI KH domain containing RNA binding, QK, Hqk, QK1, QK3, hqkI, DKFZp586I0923. QKI induces exon skipping [11917126]	24722255	Zong FY, Fu X, Wei WJ, Luo YG, Heiner M, Cao LJ, Fang Z, Fang R, Lu D, Ji H, Hui J. (2014) The RNA-Binding Protein QKI Suppresses Cancer-Associated Aberrant Splicing. PLoS Genet. 10(4):e1004289.		Construct of wt and mutant NUMB [8650] EX11 - INT11 - EX12 - INT12 - EX13. Constructs of wt and mutant Ad2 MINX EX1 - INT1 - EX2	In vivo splicing in HEK-293 along with QKI expression vector. In vitro splicing assays in HeLa nuclear extracts and recombinant protein.	EMSA with WT and mutated sequences and UV crosslinking with recombinant protein
QKI	ACUUAU	-1	Gene Name and Synonymous: QKI, QKI KH domain containing RNA binding, QK, Hqk, QK1, QK3, hqkI, DKFZp586I0923. QKI induces exon skipping [11917126]	24722255	Zong FY, Fu X, Wei WJ, Luo YG, Heiner M, Cao LJ, Fang Z, Fang R, Lu D, Ji H, Hui J. (2014) The RNA-Binding Protein QKI Suppresses Cancer-Associated Aberrant Splicing. PLoS Genet. 10(4):e1004289.		Construct of wt and mutant NUMB [8650] EX11 - INT11 - EX12 - INT12 - EX13. Constructs of wt and mutant Ad2 MINX EX1 - INT1 - EX2	In vivo splicing in HEK-293 along with QKI expression vector. In vitro splicing assays in HeLa nuclear extracts and recombinant protein.	EMSA with WT and mutated sequences and UV crosslinking with recombinant protein
QKI	ACUAAU	-10	Gene Name and Synonymous: QKI, QKI KH domain containing RNA binding, QK, Hqk, QK1, QK3, hqkI, DKFZp586I0923. QKI induces exon skipping [11917126]	24722255	Zong FY, Fu X, Wei WJ, Luo YG, Heiner M, Cao LJ, Fang Z, Fang R, Lu D, Ji H, Hui J. (2014) The RNA-Binding Protein QKI Suppresses Cancer-Associated Aberrant Splicing. PLoS Genet. 10(4):e1004289.		Construct of wt and mutant NUMB [8650] EX11 - INT11 - EX12 - INT12 - EX13. Constructs of wt and mutant Ad2 MINX EX1 - INT1 - EX2	In vivo splicing in HEK-293 along with QKI expression vector. In vitro splicing assays in HeLa nuclear extracts and recombinant protein.	EMSA with WT and mutated sequences and UV crosslinking with recombinant protein
RBM25	CGGGCA	-5	Gene Name and Synonymous: RBM25, RNA binding motif protein 25, S164, RNPC7, RED120, fSAP94, MGC105088, MGC117168. RBM25 stimulated proapoptotic Bcl-X(s) isoform through weak 5'ss selection in EX2 (PMID: 18663000).	18663000	Zhou A, Ou AC, Cho A, Benz EJ Jr, Huang SC. (2008) Novel splicing factor RBM25 modulates Bcl-x pre-mRNA 5' splice site selection. Mol Cell Biol. 28(19): 5924-5936.		Construct of Bcl-X [BCL2L1, 598] EX1 - INT1 - EX2 - INT2 - EX3 with wt or mutated EX2. Construct and variants of Adenovirus E1A unit.	In vivo splicing assay in HeLa cell	Mutational analysis, immuoprecipitation assay in HeLa cells, EMSA and competition assay with recombinant protein.
RBM25	AUCGGGCA	-5	Gene Name and Synonymous: RBM25, RNA binding motif protein 25, S164, RNPC7, RED120, fSAP94, MGC105088, MGC117168. RBM25 stimulated proapoptotic Bcl-X(s) isoform through weak 5'ss selection in EX2 (PMID: 18663000).	23190262	Gong D, Yang F, Li F, Qian D, Wu M, Shao Z, Wu M, Wu J, Shi Y. (2013) Crystal structure and functional characterization of the human RBM25 PWI domain and its flanking basic region. Biochem J. 450(1):85-94.		Synthetic sequence		Fluorescence polarization assay
RBM4	CCUUCCUU	4	Gene Name and Synonymous: RBM4, RNA binding motif protein 4, LARK, RBM4A, ZCRB3A, ZCCHC21, MGC75138, DKFZp547K0918. RBM4 induce exon inclusion of alpha-TM EX9a and EX2b (PMID: 16260624) and tau EX10 (PMID: 16777844).	16260624	Lin JC, Tarn WY. (2005) Exon selection in alpha-tropomyosin mRNA is regulated by the antagonistic action of RBM4 and PTB. Mol Cell Biol. 25(22): 10111-10121.	PTB and RBM4 are in competition for CU1 element. PTB appear to bind with more affinity than RBM4.	Construct of alpha-TM [TPM1, 7168] EX8 - INT8 - EX9a - INT9a - EX9b and EX1 - INT1 - EX2b - INT2b - EX3.	In vivo splicing in HEK293 cells.	Mutational analysis.
RBM4	UCCUUCUUG	5	Gene Name and Synonymous: RBM4, RNA binding motif protein 4, LARK, RBM4A, ZCRB3A, ZCCHC21, MGC75138, DKFZp547K0918. RBM4 induce exon inclusion of alpha-TM EX9a and EX2b (PMID: 16260624) and tau EX10 (PMID: 16777844).	16777844	Kar A, Havlioglu N, Tarn WY, Wu JY. (2006) RBM4 interacts with an intronic element and stimulates tau exon 10 inclusion. J Biol Chem. 281(34): 24479-24488.		WT and mutant constucts of Tau MAPT [4137] EX9 - INT9 - EX10 - INT10 - EX11.	In vivo splicing in HEK293 cells.	Mutational analysis, UV cross-linking assay with purified recombinant protein.
RBM4	GCGCGCG	5	Gene Name and Synonymous: RBM4, RNA binding motif protein 4, LARK, RBM4A, ZCRB3A, ZCCHC21, MGC75138, DKFZp547K0918. RBM4 induce exon inclusion of alpha-TM EX9a and EX2b (PMID: 16260624) and tau EX10 (PMID: 16777844).	19561594	Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol. 27(7):667-670.		Synthesized sequences		RNAcompete using recombinant protein
RBM4	GCGCGGG	5	Gene Name and Synonymous: RBM4, RNA binding motif protein 4, LARK, RBM4A, ZCRB3A, ZCCHC21, MGC75138, DKFZp547K0918. RBM4 induce exon inclusion of alpha-TM EX9a and EX2b (PMID: 16260624) and tau EX10 (PMID: 16777844).	19561594	Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol. 27(7):667-670.		Synthesized sequences		RNAcompete using recombinant protein
RBM4	CGCGCGG	5	Gene Name and Synonymous: RBM4, RNA binding motif protein 4, LARK, RBM4A, ZCRB3A, ZCCHC21, MGC75138, DKFZp547K0918. RBM4 induce exon inclusion of alpha-TM EX9a and EX2b (PMID: 16260624) and tau EX10 (PMID: 16777844).	19561594	Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol. 27(7):667-670.		Synthesized sequences		RNAcompete using recombinant protein
RBM4	CGCGCGA	5	Gene Name and Synonymous: RBM4, RNA binding motif protein 4, LARK, RBM4A, ZCRB3A, ZCCHC21, MGC75138, DKFZp547K0918. RBM4 induce exon inclusion of alpha-TM EX9a and EX2b (PMID: 16260624) and tau EX10 (PMID: 16777844).	19561594	Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol. 27(7):667-670.		Synthesized sequences		RNAcompete using recombinant protein
RBM4	GCGCGGU	5	Gene Name and Synonymous: RBM4, RNA binding motif protein 4, LARK, RBM4A, ZCRB3A, ZCCHC21, MGC75138, DKFZp547K0918. RBM4 induce exon inclusion of alpha-TM EX9a and EX2b (PMID: 16260624) and tau EX10 (PMID: 16777844).	19561594	Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol. 27(7):667-670.		Synthesized sequences		RNAcompete using recombinant protein
RBM4	CCUCUUU	-5	Gene Name and Synonymous: RBM4, RNA binding motif protein 4, LARK, RBM4A, ZCRB3A, ZCCHC21, MGC75138, DKFZp547K0918. RBM4 induce exon inclusion of alpha-TM EX9a and EX2b (PMID: 16260624) and tau EX10 (PMID: 16777844).	21518792	Lin JC, Tarn WY. (2011) RBM4 down-regulates PTB and antagonizes its activity in muscle cell-specific alternative splicing. J Cell Biol. 193(3):509-520.		Constructs of wt or mutated TPM1 [7168]_EX8 - Ptbp1 [19205]_INT10 - Ptbp1 [19205]_EX11 - Ptbp1 [19205]_INT11 - TPM1 [7168]_ EX9B	In vivo splicing in C2C12 cells overexpressing human recombinant proteins	Mutagenesis, in vivo splicing assay
RBM5	GGGGGGG	-7	Gene Name and Synonymous: RBM5, RNA binding motif protein 5, G15, H37, RMB5, LUCA15, FLJ39876	11029660	Edamatsu H, Kaziro Y, Itoh H. (2000) LUCA15, a putative tumour suppressor gene encoding an RNA-binding nuclear protein, is down-regulated in ras-transformed Rat-1 cells. Genes Cells. 5(10):849-858.		Homopolymers		Homopolymer binding assay with recombinant protein.
RBM5	CCCCCCC	-5	Gene Name and Synonymous: RBM5, RNA binding motif protein 5, G15, H37, RMB5, LUCA15, FLJ39876	11029660	Edamatsu H, Kaziro Y, Itoh H. (2000) LUCA15, a putative tumour suppressor gene encoding an RNA-binding nuclear protein, is down-regulated in ras-transformed Rat-1 cells. Genes Cells. 5(10):849-858.		Homopolymers		Homopolymer binding assay with recombinant protein.
RBM5	AAAAAAA	-1	Gene Name and Synonymous: RBM5, RNA binding motif protein 5, G15, H37, RMB5, LUCA15, FLJ39876	11029660	Edamatsu H, Kaziro Y, Itoh H. (2000) LUCA15, a putative tumour suppressor gene encoding an RNA-binding nuclear protein, is down-regulated in ras-transformed Rat-1 cells. Genes Cells. 5(10):849-858.		Homopolymers		Homopolymer binding assay with recombinant protein.
RBM5	CUCUUCUCU	-5	Gene Name and Synonymous: RBM5, RNA binding motif protein 5, G15, H37, RMB5, LUCA15, FLJ39876	18840686	Fushimi K, Ray P, Kar A, Wang L, Sutherland LC, Wu JY. (2008) Up-regulation of the proapoptotic caspase 2 splicing isoform by a candidate tumor suppressor, RBM5. Proc Natl Acad Sci U S A. 105(41):15708-15713.		Sequences deriving from mouse Casp2 [12366]. Constructs of wt and mutated mouse Casp2 [12366] EX8 - INT8 - EX9 - INT9 - EX10.	In vitro splicing assay using HeLa NE and in vivo splicing in HEK293, protein overexpression and siRNA knockdown.	EMSA and UV cross-linking with recombinant protein.
RBM5	AGGUAA	-5	Gene Name and Synonymous: RBM5, RNA binding motif protein 5, G15, H37, RMB5, LUCA15, FLJ39876	22162216	Farina B, Fattorusso R, Pellecchia M. (2011) Targeting zinc finger domains with small molecules: solution structure and binding studies of the RanBP2-type zinc finger of RBM5. Chembiochem. 12(18):2837-2845.		Synthesized sequences		Chemical shift mapping (NMR)
RBM5	GGGGGG	-10	Gene Name and Synonymous: RBM5, RNA binding motif protein 5, G15, H37, RMB5, LUCA15, FLJ39876	22517726	O'Connell MR, Vandevenne M, Nguyen CD, Matthews JM, Gamsjaeger R, Segal DJ, Mackay JP. (2012) Modular Assembly of RanBP2-Type Zinc Finger Domains to Target Single-Stranded RNA. Angew Chem Int Ed Engl. 51(22):5371-5375.		Synthesized sequences		Fluorescence anisotropy titration, isothermal titration calorimetry and HSQC spectroscopy using recombinant protein
RBM5	GGUGGU	-3	Gene Name and Synonymous: RBM5, RNA binding motif protein 5, G15, H37, RMB5, LUCA15, FLJ39876	22517726	O'Connell MR, Vandevenne M, Nguyen CD, Matthews JM, Gamsjaeger R, Segal DJ, Mackay JP. (2012) Modular Assembly of RanBP2-Type Zinc Finger Domains to Target Single-Stranded RNA. Angew Chem Int Ed Engl. 51(22):5371-5375.		Synthesized sequences		Fluorescence anisotropy titration, isothermal titration calorimetry and HSQC spectroscopy using recombinant protein
Sam68	UUUUUUU	6	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	17764653	Rho J, Choi S, Jung CR, Im DS. (2007) Arginine methylation of Sam68 and SLM proteins negatively regulates their poly(U) RNA binding activity. Arch Biochem Biophys. 466(1):49-57.	Methylation of Sam68, SLM-1, SLM-2 proteins markedly reduced their poly(rU) binding ability in vitro.	Homopolymers		Immunoblot analysis with 293 and 293T lysates. Northwestern with recombinant protein.
Sam68	UUAAAA	5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	12490714	Itoh M, Haga I, Li QH, Fujisawa J. (2002) Identification of cellular mRNA targets for RNA-binding protein Sam68. Nucleic Acids Res. 30(24):5452-5464.		synthesized oligos		Differential display and cDNA-representational difference analysis (cDNA-RDA) in vitro. In vivo coimmunoprecipitation. Further in vitro binding: protein incubated with labeled RNA.
Sam68	CAAAAU	2	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	9341174	Lin Q, Taylor SJ, Shalloway D. (1997) Specificity and determinants of Sam68 RNA binding. Implications for the biological function of K homology domains. J Biol Chem. 272(43):27274-27280.		Sequences of 40 nt random for SELEX.		SELEX of 40nt random with recombinant protein. Winners and mutants confirmed by EMSA with recombinant protein.
Sam68	GAAAAC	2	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	9341174	Lin Q, Taylor SJ, Shalloway D. (1997) Specificity and determinants of Sam68 RNA binding. Implications for the biological function of K homology domains. J Biol Chem. 272(43):27274-27280.		Sequences of 40 nt random for SELEX.		SELEX of 40nt random with recombinant protein. Winners and mutants confirmed by EMSA with recombinant protein.
Sam68	UUUUUU	5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	12490714	Itoh M, Haga I, Li QH, Fujisawa J. (2002) Identification of cellular mRNA targets for RNA-binding protein Sam68. Nucleic Acids Res. 30(24):5452-5464.		synthesized oligos		Differential display and cDNA-representational difference analysis (cDNA-RDA) in vitro. In vivo coimmunoprecipitation. Further in vitro binding: protein incubated with labeled RNA.
Sam68	UUUUA	-5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	20186123	Pedrotti S, Bielli P, Paronetto MP, Ciccosanti F, Fimia GM, Stamm S, Manley JL, Sette C. (2010) The splicing regulator Sam68 binds to a novel exonic splicing silencer and functions in SMN2 alternative splicing in spinal muscular atrophy. EMBO J. 29(7):1235-1247.		Sequences deriving from SMN2 [6607]. Constructs of SMN2 [6607] EX6 - INT6 - EX7 - INT7 - EX8.	In vivo splicing in HeLa, HEK293T, SH-SY5Y and SW480	RNA pull-down assays with HEK293T NE, UV cross-linking and immunoprecipitation with HeLa and HEK293T NE, mutation analysis, EMSA and Western blot with HEK293T NE.
Sam68	UUAAAU	10	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	9341174	Lin Q, Taylor SJ, Shalloway D. (1997) Specificity and determinants of Sam68 RNA binding. Implications for the biological function of K homology domains. J Biol Chem. 272(43):27274-27280.		Sequences of 40 nt random for SELEX.		SELEX of 40nt random with recombinant protein. Winners and mutants confirmed by EMSA with recombinant protein.
Sam68	AUAAAA	10	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	9341174	Lin Q, Taylor SJ, Shalloway D. (1997) Specificity and determinants of Sam68 RNA binding. Implications for the biological function of K homology domains. J Biol Chem. 272(43):27274-27280.		Sequences of 40 nt random for SELEX.		SELEX of 40nt random with recombinant protein. Winners and mutants confirmed by EMSA with recombinant protein.
Sam68	CUAAAU	10	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	9341174	Lin Q, Taylor SJ, Shalloway D. (1997) Specificity and determinants of Sam68 RNA binding. Implications for the biological function of K homology domains. J Biol Chem. 272(43):27274-27280.		Sequences of 40 nt random for SELEX.		SELEX of 40nt random with recombinant protein. Winners and mutants confirmed by EMSA with recombinant protein.
Sam68	CUAAAA	10	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	9341174	Lin Q, Taylor SJ, Shalloway D. (1997) Specificity and determinants of Sam68 RNA binding. Implications for the biological function of K homology domains. J Biol Chem. 272(43):27274-27280.		Sequences of 40 nt random for SELEX.		SELEX of 40nt random with recombinant protein. Winners and mutants confirmed by EMSA with recombinant protein.
Sam68	UUUUAC	5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	9341174	Lin Q, Taylor SJ, Shalloway D. (1997) Specificity and determinants of Sam68 RNA binding. Implications for the biological function of K homology domains. J Biol Chem. 272(43):27274-27280.		Sequences of 40 nt random for SELEX.		SELEX of 40nt random with recombinant protein. Winners and mutants confirmed by EMSA with recombinant protein.
Sam68	AUUUAA	5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	9341174	Lin Q, Taylor SJ, Shalloway D. (1997) Specificity and determinants of Sam68 RNA binding. Implications for the biological function of K homology domains. J Biol Chem. 272(43):27274-27280.		Sequences of 40 nt random for SELEX.		SELEX of 40nt random with recombinant protein. Winners and mutants confirmed by EMSA with recombinant protein.
Sam68	AUUUAC	5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	9341174	Lin Q, Taylor SJ, Shalloway D. (1997) Specificity and determinants of Sam68 RNA binding. Implications for the biological function of K homology domains. J Biol Chem. 272(43):27274-27280.		Sequences of 40 nt random for SELEX.		SELEX of 40nt random with recombinant protein. Winners and mutants confirmed by EMSA with recombinant protein.
Sam68	CGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGG	5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	20186122	Sellier C, Rau F, Liu Y, Tassone F, Hukema RK, Gattoni R, Schneider A, Richard S, Willemsen R, Elliott DJ, Hagerman PJ, Charlet-Berguerand N. (2010) Sam68 sequestration and partial loss of function are associated with splicing alterations in FXTAS patients. EMBO J. 29(7):1248-1261.		Sequences deriving from FMR1 [2332].		FISH/IF and immunohistochemistry in human brain (hippocampal sections) of FXTAS patients.
Sam68	AAAAUU	5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	20876280	Valacca C, Bonomi S, Buratti E, Pedrotti S, Baralle FE, Sette C, Ghigna C, Biamonti G. (2010) Sam68 regulates EMT through alternative splicing-activated nonsense-mediated mRNA decay of the SF2/ASF proto-oncogene. J Cell Biol. 191(1):87-99.		Construct of SRSF1 [6426] EX4 - INT4 - EX5. Sequences deriving from SRSF1 [6426].	In vivo splicing in SW480 cells, using WT or mutated minigenes	Mutational analysis and pull-down assay with HeLa nuclear extract. In vivo RNA immunoprecipitation of target RNA in cross-linked SW480 cells.
Sam68	AUUAAA	-10	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	26758068	Feracci M, Foot JN, Grellscheid SN, Danilenko M, Stehle R, Gonchar O, Kang HS, Dalgliesh C, Meyer NH, Liu Y, Lahat A, Sattler M, Eperon IC, Elliott DJ, Dominguez C. (2016) Structural basis of RNA recognition and dimerization by the STAR proteins T-STAR and Sam68. Nat Commun. 7:10355.		Synthetic sequences.		X-ray crystallography and fluorescence polarization
Sam68	UAAU	-5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	26758068	Feracci M, Foot JN, Grellscheid SN, Danilenko M, Stehle R, Gonchar O, Kang HS, Dalgliesh C, Meyer NH, Liu Y, Lahat A, Sattler M, Eperon IC, Elliott DJ, Dominguez C. (2016) Structural basis of RNA recognition and dimerization by the STAR proteins T-STAR and Sam68. Nat Commun. 7:10355.		Synthetic sequences.		X-ray crystallography and fluorescence polarization
Sam68	AAAUAA	-5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	26758068	Feracci M, Foot JN, Grellscheid SN, Danilenko M, Stehle R, Gonchar O, Kang HS, Dalgliesh C, Meyer NH, Liu Y, Lahat A, Sattler M, Eperon IC, Elliott DJ, Dominguez C. (2016) Structural basis of RNA recognition and dimerization by the STAR proteins T-STAR and Sam68. Nat Commun. 7:10355.		Synthetic sequences.		X-ray crystallography and fluorescence polarization
Sam68	AAUAAU	-5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	26758068	Feracci M, Foot JN, Grellscheid SN, Danilenko M, Stehle R, Gonchar O, Kang HS, Dalgliesh C, Meyer NH, Liu Y, Lahat A, Sattler M, Eperon IC, Elliott DJ, Dominguez C. (2016) Structural basis of RNA recognition and dimerization by the STAR proteins T-STAR and Sam68. Nat Commun. 7:10355.		Synthetic sequences.		X-ray crystallography and fluorescence polarization
Sam68	AUAAA	-5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	26758068	Feracci M, Foot JN, Grellscheid SN, Danilenko M, Stehle R, Gonchar O, Kang HS, Dalgliesh C, Meyer NH, Liu Y, Lahat A, Sattler M, Eperon IC, Elliott DJ, Dominguez C. (2016) Structural basis of RNA recognition and dimerization by the STAR proteins T-STAR and Sam68. Nat Commun. 7:10355.		Synthetic sequences.		X-ray crystallography and fluorescence polarization
Sam68	UUAAA	-5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	26758068	Feracci M, Foot JN, Grellscheid SN, Danilenko M, Stehle R, Gonchar O, Kang HS, Dalgliesh C, Meyer NH, Liu Y, Lahat A, Sattler M, Eperon IC, Elliott DJ, Dominguez C. (2016) Structural basis of RNA recognition and dimerization by the STAR proteins T-STAR and Sam68. Nat Commun. 7:10355.		Synthetic sequences.		X-ray crystallography and fluorescence polarization
Sam68	CUAAA	-5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	26758068	Feracci M, Foot JN, Grellscheid SN, Danilenko M, Stehle R, Gonchar O, Kang HS, Dalgliesh C, Meyer NH, Liu Y, Lahat A, Sattler M, Eperon IC, Elliott DJ, Dominguez C. (2016) Structural basis of RNA recognition and dimerization by the STAR proteins T-STAR and Sam68. Nat Commun. 7:10355.		Synthetic sequences.		X-ray crystallography and fluorescence polarization
Sam68	AAAAA	-5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	26758068	Feracci M, Foot JN, Grellscheid SN, Danilenko M, Stehle R, Gonchar O, Kang HS, Dalgliesh C, Meyer NH, Liu Y, Lahat A, Sattler M, Eperon IC, Elliott DJ, Dominguez C. (2016) Structural basis of RNA recognition and dimerization by the STAR proteins T-STAR and Sam68. Nat Commun. 7:10355.		Synthetic sequences.		X-ray crystallography and fluorescence polarization
Sam68	AUAAU	-5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	26758068	Feracci M, Foot JN, Grellscheid SN, Danilenko M, Stehle R, Gonchar O, Kang HS, Dalgliesh C, Meyer NH, Liu Y, Lahat A, Sattler M, Eperon IC, Elliott DJ, Dominguez C. (2016) Structural basis of RNA recognition and dimerization by the STAR proteins T-STAR and Sam68. Nat Commun. 7:10355.		Synthetic sequences.		X-ray crystallography and fluorescence polarization
Sam68	UUAAUUAAUUAAUUAACUAACUAACUAACUUUAA	-3	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	23637638	Ehrmann I, Dalgliesh C, Liu Y, Danilenko M, Crosier M, Overman L, Arthur HM, Lindsay S, Clowry GJ, Venables JP, Fort P, Elliott DJ. (2013) The tissue-specific RNA binding protein T-STAR controls regional splicing patterns of neurexin pre-mRNAs in the brain. PLoS Genet. 9(4):e1003474.		Construct of mouse Nrxn2 [18190] INT19 - EX20 - INT20	In vivo splicing in HEK293 cells, using WT or mutated minigenes	EMSA with recombinant protein
Sam68	AAUUAAUUAAUUAAUUAACUAACUAACUAACUUUAAAAACACGAUCUUAAA	-3	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	27994030	Danilenko M, Dalgliesh C, Pagliarini V, Naro C, Ehrmann I, Feracci M, Kheirollahi-Chadegani M, Tyson-Capper A, Clowry GJ, Fort P, Dominguez C, Sette C, Elliott DJ. (2016) Binding site density enables paralog-specific activity of SLM2 and Sam68 proteins in Neurexin2 AS4 splicing control. Nucleic Acids Res.		Construct of mouse Nrxn2 [18190] INT19 - EX20 - INT20	In vivo splicing in HEK293 cells, using WT or mutated minigenes	Fluorescence polarization
Sam68	AAUUAAUUAAUUAAUUAACCCACCCACCCACUUUAAAAACACGAUCUUAAA	-3	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	27994030	Danilenko M, Dalgliesh C, Pagliarini V, Naro C, Ehrmann I, Feracci M, Kheirollahi-Chadegani M, Tyson-Capper A, Clowry GJ, Fort P, Dominguez C, Sette C, Elliott DJ. (2016) Binding site density enables paralog-specific activity of SLM2 and Sam68 proteins in Neurexin2 AS4 splicing control. Nucleic Acids Res.		Construct of mouse Nrxn2 [18190] INT19 - EX20 - INT20	In vivo splicing in HEK293 cells, using WT or mutated minigenes	Fluorescence polarization
Sam68	UAAAAUAAAAUAAAAUAAAA	-3	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	27994030	Danilenko M, Dalgliesh C, Pagliarini V, Naro C, Ehrmann I, Feracci M, Kheirollahi-Chadegani M, Tyson-Capper A, Clowry GJ, Fort P, Dominguez C, Sette C, Elliott DJ. (2016) Binding site density enables paralog-specific activity of SLM2 and Sam68 proteins in Neurexin2 AS4 splicing control. Nucleic Acids Res.		Construct of mouse Nrxn2 [18190] INT19 - EX20 - INT20	In vivo splicing in HEK293 cells, using WT or mutated minigenes	Fluorescence polarization
Sam68	ACAGUUUAAAAUUUGAUAAAAUUU	-3	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	27994030	Danilenko M, Dalgliesh C, Pagliarini V, Naro C, Ehrmann I, Feracci M, Kheirollahi-Chadegani M, Tyson-Capper A, Clowry GJ, Fort P, Dominguez C, Sette C, Elliott DJ. (2016) Binding site density enables paralog-specific activity of SLM2 and Sam68 proteins in Neurexin2 AS4 splicing control. Nucleic Acids Res.		Construct of mouse Nrxn2 [18190] INT19 - EX20 - INT20	In vivo splicing in HEK293 cells, using WT or mutated minigenes	Fluorescence polarization
Sam68	UUACAUUUAAAAGAUGAUUUAAAAA	-3	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	27994030	Danilenko M, Dalgliesh C, Pagliarini V, Naro C, Ehrmann I, Feracci M, Kheirollahi-Chadegani M, Tyson-Capper A, Clowry GJ, Fort P, Dominguez C, Sette C, Elliott DJ. (2016) Binding site density enables paralog-specific activity of SLM2 and Sam68 proteins in Neurexin2 AS4 splicing control. Nucleic Acids Res.		Construct of mouse Nrxn2 [18190] INT19 - EX20 - INT20	In vivo splicing in HEK293 cells, using WT or mutated minigenes	Fluorescence polarization
Sam68	AAUCCAUUAAUUAAUUAACUAACUAACUAACUUUAAAAACACGAUCUUAAA	-3	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	27994030	Danilenko M, Dalgliesh C, Pagliarini V, Naro C, Ehrmann I, Feracci M, Kheirollahi-Chadegani M, Tyson-Capper A, Clowry GJ, Fort P, Dominguez C, Sette C, Elliott DJ. (2016) Binding site density enables paralog-specific activity of SLM2 and Sam68 proteins in Neurexin2 AS4 splicing control. Nucleic Acids Res.		Construct of mouse Nrxn2 [18190] INT19 - EX20 - INT20	In vivo splicing in HEK293 cells, using WT or mutated minigenes	Fluorescence polarization
Sam68	AAUUAAUCCAUUAAUUAACUAACUAACUAACUUUAAAAACACGAUCUUAAA	-3	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	27994030	Danilenko M, Dalgliesh C, Pagliarini V, Naro C, Ehrmann I, Feracci M, Kheirollahi-Chadegani M, Tyson-Capper A, Clowry GJ, Fort P, Dominguez C, Sette C, Elliott DJ. (2016) Binding site density enables paralog-specific activity of SLM2 and Sam68 proteins in Neurexin2 AS4 splicing control. Nucleic Acids Res.		Construct of mouse Nrxn2 [18190] INT19 - EX20 - INT20	In vivo splicing in HEK293 cells, using WT or mutated minigenes	Fluorescence polarization
Sam68	AAUUAAUUAAUCCAUUAACUAACUAACUAACUUUAAAAACACGAUCUUAAA	-3	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	27994030	Danilenko M, Dalgliesh C, Pagliarini V, Naro C, Ehrmann I, Feracci M, Kheirollahi-Chadegani M, Tyson-Capper A, Clowry GJ, Fort P, Dominguez C, Sette C, Elliott DJ. (2016) Binding site density enables paralog-specific activity of SLM2 and Sam68 proteins in Neurexin2 AS4 splicing control. Nucleic Acids Res.		Construct of mouse Nrxn2 [18190] INT19 - EX20 - INT20	In vivo splicing in HEK293 cells, using WT or mutated minigenes	Fluorescence polarization
Sam68	AAUUAAUUAAUUAAUCCACUAACUAACUAACUUUAAAAACACGAUCUUAAA	-3	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	27994030	Danilenko M, Dalgliesh C, Pagliarini V, Naro C, Ehrmann I, Feracci M, Kheirollahi-Chadegani M, Tyson-Capper A, Clowry GJ, Fort P, Dominguez C, Sette C, Elliott DJ. (2016) Binding site density enables paralog-specific activity of SLM2 and Sam68 proteins in Neurexin2 AS4 splicing control. Nucleic Acids Res.		Construct of mouse Nrxn2 [18190] INT19 - EX20 - INT20	In vivo splicing in HEK293 cells, using WT or mutated minigenes	Fluorescence polarization
Sam68	AAUUAAUUAAUUAAUUAACUAACUAACUAACUUCCAAAACACGAUCUUAAA	-3	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	27994030	Danilenko M, Dalgliesh C, Pagliarini V, Naro C, Ehrmann I, Feracci M, Kheirollahi-Chadegani M, Tyson-Capper A, Clowry GJ, Fort P, Dominguez C, Sette C, Elliott DJ. (2016) Binding site density enables paralog-specific activity of SLM2 and Sam68 proteins in Neurexin2 AS4 splicing control. Nucleic Acids Res.		Construct of mouse Nrxn2 [18190] INT19 - EX20 - INT20	In vivo splicing in HEK293 cells, using WT or mutated minigenes	Fluorescence polarization
Sam68	AAUUAAUUAAUUAAUUAACUAACUAACUAACUUUAAAAACACGAUCUCCAA	-3	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	27994030	Danilenko M, Dalgliesh C, Pagliarini V, Naro C, Ehrmann I, Feracci M, Kheirollahi-Chadegani M, Tyson-Capper A, Clowry GJ, Fort P, Dominguez C, Sette C, Elliott DJ. (2016) Binding site density enables paralog-specific activity of SLM2 and Sam68 proteins in Neurexin2 AS4 splicing control. Nucleic Acids Res.		Construct of mouse Nrxn2 [18190] INT19 - EX20 - INT20	In vivo splicing in HEK293 cells, using WT or mutated minigenes	Fluorescence polarization
Sam68	AAAAAA	-5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
Sam68	AAAAAAUAA	-5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
Sam68	AAAU	-2	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
Sam68	AAAUA	-2	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
Sam68	AAAUAU	-5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
Sam68	AAAUUU	-2	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
Sam68	AAUA	-2	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
Sam68	AAUAA	-2	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
Sam68	AAUAAA	-5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
Sam68	AAUAUU	-5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
Sam68	AAUUUU	-5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
Sam68	AUAA	-2	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
Sam68	AUUAAUUA	-5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
Sam68	AUUUUU	-5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
Sam68	UAAAAA	-5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
Sam68	UAAAAAUUUU	-5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
Sam68	UAAAAU	-5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
Sam68	UAAAAUUUUU	-5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
Sam68	UAAAUA	-5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
Sam68	UAAAUAAUU	-5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
Sam68	UAAAUAUUUU	-5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
Sam68	UAAAUU	-5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
Sam68	UAAAUUUUUU	-5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
Sam68	UAAUAAAUU	-5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
Sam68	UAAUUAAU	-5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
Sam68	UUUAAA	-5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
Sam68	UUUAAAUAA	-5	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
Sam68	UAAAAGCGCCCGGUUUAAA	-10	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	26695943	Rai DK, Lawrence P, Kloc A, Schafer E, Rieder E. (2015) Analysis of the interaction between host factor Sam68 and viral elements during foot-and-mouth disease virus infections. Virol J. 12:224.		Sequences deriving from wt and mutated IRES of FMDV (foot-and-mouth disease virus)		EMSA with recombinat protein
Sam68	UACGAGCGCCCGGUUUACG	-1	Gene Name and Synonymous: KHDRBS1, KH domain containing RNA binding signal transduction associated 1, p62, FLJ34027.	26695943	Rai DK, Lawrence P, Kloc A, Schafer E, Rieder E. (2015) Analysis of the interaction between host factor Sam68 and viral elements during foot-and-mouth disease virus infections. Virol J. 12:224.		Sequences deriving from wt and mutated IRES of FMDV (foot-and-mouth disease virus)		EMSA with recombinat protein
SAP155	GAGGGAGGCAGGCGACGAG	-5	Gene Name and Synonymous: SF3B1, splicing factor 3b, subunit 1, 155kDa, PRP10, PRPF10, SAP155, SF3b155, SF3B1. SAP155 stimulated proapoptotic Bcl-X(s) isoform through weak 5'ss selection in EX2 in response to ceramide (PMID: 16790528).	16790528	Massiello A, Roesser JR, Chalfant CE. (2006) SAP155 Binds to ceramide-responsive RNA cis-element 1 and regulates the alternative 5' splice site selection of Bcl-x pre-mRNA. FASEB J. 20(10): 1680-1682.		Bcl-X [BCL2L1, 598] RNAs.		Mass spectrometric analysis, EMSA supershift, RNAi, pull-down assay, western immunoblotting with A549 nuclear extract.
SAP155	GGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCC	-2	Gene Name and Synonymous: SF3B1, splicing factor 3b, subunit 1, 155kDa, PRP10, PRPF10, SAP155, SF3b155, SF3B1. SAP155 stimulated proapoptotic Bcl-X(s) isoform through weak 5'ss selection in EX2 in response to ceramide (PMID: 16790528).	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
SAP155	AAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACC	-2	Gene Name and Synonymous: SF3B1, splicing factor 3b, subunit 1, 155kDa, PRP10, PRPF10, SAP155, SF3b155, SF3B1. SAP155 stimulated proapoptotic Bcl-X(s) isoform through weak 5'ss selection in EX2 in response to ceramide (PMID: 16790528).	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
SC35	AGAAG	7	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	11847131	Caputi M, Zahler AM. (2002) SR proteins and hnRNP H regulate the splicing of the HIV-1 tev-specific exon 6D. EMBO J. 21(4): 845-855.		Construct of HIV-1 env [155971] EX_6D and part of flanking introns.	In vitro splicing with HeLa nuclear extracts	RNA affinity chromatography assay and immunoblot.
SC35	AGCAG	8	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	11847131	Caputi M, Zahler AM. (2002) SR proteins and hnRNP H regulate the splicing of the HIV-1 tev-specific exon 6D. EMBO J. 21(4): 845-855.		Construct of HIV-1 env [155971] EX_6D and part of flanking introns.	In vitro splicing with HeLa nuclear extracts	RNA affinity chromatography assay and immunoblot.
SC35	AGGAG	8	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	11847131	Caputi M, Zahler AM. (2002) SR proteins and hnRNP H regulate the splicing of the HIV-1 tev-specific exon 6D. EMBO J. 21(4): 845-855.		Construct of HIV-1 env [155971] EX_6D and part of flanking introns.	In vitro splicing with HeLa nuclear extracts	RNA affinity chromatography assay and immunoblot.
SC35	AGUAG	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	11847131	Caputi M, Zahler AM. (2002) SR proteins and hnRNP H regulate the splicing of the HIV-1 tev-specific exon 6D. EMBO J. 21(4): 845-855.		Construct of HIV-1 env [155971] EX_6D and part of flanking introns.	In vitro splicing with HeLa nuclear extracts	RNA affinity chromatography assay and immunoblot.
SC35	AAGCAGUAGGG	8	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	AAGCAGUAGUC	8	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	ACGAGAG	6	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	ACGAGAU	8	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	AGAGAUGCUG	4	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	AGGAGAA	8	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	AGGAGAG	8	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	AGGAGAU	10	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	AGGCAGU	4	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	AGGCAGUAGUC	6	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	AGGGUAU	6	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	AGUCGAU	6	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	AGUUCCAGCC	4	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	AGUUCCAGGG	4	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	AUGAAUGCUG	4	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	GGAACGAGAU	4	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	CGUGAUGCUG	4	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	GAGCAGUAGGG	10	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	GAGCAGUAGUC	10	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	GAGCAGUGGUC	8	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	GAUGAUGCUG	4	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	GAUUCCAGCUA	8	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	GAUUCCUGCUA	10	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	GCGCAGUAGGG	8	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	GCGCAGUAGUC	8	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	GGAACCAGCUA	4	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	GGGAAUGCCG	6	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	GGGAAUGCUG	8	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	GGGAGCC	4	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	GGGCAGUAGGG	8	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	GGGUAGCUG	8	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	GGGUAUGCCG	8	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	GGGUAUGCUG	10	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	GGGUGAGCUG	6	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	GGUGAUGCGU	2	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	GGUUCCAGAU	8	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	GGUUCCAGUU	8	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	GGUUCCUGUUA	6	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	GUAACCAGCUA	6	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	GUAUCCCGCUA	6	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	GUGCAGUAGGG	8	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	GUUACCAGUCC	2	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	GUUACGUGUAA	4	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	UCGAGAU	6	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	UCGUAAGCUG	4	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	UGAUCGAGUA	6	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	UGGAGAU	8	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	UGGCAGUAGGG	6	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	UGUUCCAGAA	8	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	UGUUCCAGAU	10	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	UGUUCCAGCU	8	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	UGUUCCAGUG	8	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	UGUUCCGGAU	8	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	UGUUCGAGAA	8	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	UGUUCGAGAU	10	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	UGUUCGAGUA	8	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	UGUUCGUGCG	4	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SC35	AAAAGAGAAG	4	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	9848651	Dye BT, Buvoli M, Mayer SA, Lin CH, Patton JG. (1998) Enhancer elements activate the weak 3' splice site of alpha-tropomyosin exon 2. RNA. 4(12): 1523-1536.		Contructs of tropomyosin 1 alpha TPM1 [7168] EX1 - INT1 - EX2 - INT2 - EX3 with WT and mutants competitor sequences of TPM1 EX2 for in vitro splicing. Construct of TPM1 EX1 - INT1 - EX2 - INT2 - EX3 - INT3 - EX4 with wt or mutants EX2 for in vivo splicing.	In vitro splicing and competition in HeLa cell nuclear extracts. In vivo splicing into smooth muscle cells (SMCs) and HeLa cells.	UV crosslink, competition assay, Western blot, EMSA using EX2 alpha-TM and purified proteins or HeLa nuclear extracts.
SC35	GAGGAGGA	4	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	9848651	Dye BT, Buvoli M, Mayer SA, Lin CH, Patton JG. (1998) Enhancer elements activate the weak 3' splice site of alpha-tropomyosin exon 2. RNA. 4(12): 1523-1536.		Contructs of tropomyosin 1 alpha TPM1 [7168] EX1 - INT1 - EX2 - INT2 - EX3 with WT and mutants competitor sequences of TPM1 EX2 for in vitro splicing. Construct of TPM1 EX1 - INT1 - EX2 - INT2 - EX3 - INT3 - EX4 with wt or mutants EX2 for in vivo splicing.	In vitro splicing and competition in HeLa cell nuclear extracts. In vivo splicing into smooth muscle cells (SMCs) and HeLa cells.	UV crosslink, competition assay, Western blot, EMSA using EX2 alpha-TM and purified proteins or HeLa nuclear extracts.
SC35	GGAGGAC	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	9848651	Dye BT, Buvoli M, Mayer SA, Lin CH, Patton JG. (1998) Enhancer elements activate the weak 3' splice site of alpha-tropomyosin exon 2. RNA. 4(12): 1523-1536.		Contructs of tropomyosin 1 alpha TPM1 [7168] EX1 - INT1 - EX2 - INT2 - EX3 with WT and mutants competitor sequences of TPM1 EX2 for in vitro splicing. Construct of TPM1 EX1 - INT1 - EX2 - INT2 - EX3 - INT3 - EX4 with wt or mutants EX2 for in vivo splicing.	In vitro splicing and competition in HeLa cell nuclear extracts. In vivo splicing into smooth muscle cells (SMCs) and HeLa cells.	UV crosslink, competition assay, Western blot, EMSA using EX2 alpha-TM and purified proteins or HeLa nuclear extracts.
SC35	GGAGGAG	4	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	9848651	Dye BT, Buvoli M, Mayer SA, Lin CH, Patton JG. (1998) Enhancer elements activate the weak 3' splice site of alpha-tropomyosin exon 2. RNA. 4(12): 1523-1536.		Contructs of tropomyosin 1 alpha TPM1 [7168] EX1 - INT1 - EX2 - INT2 - EX3 with WT and mutants competitor sequences of TPM1 EX2 for in vitro splicing. Construct of TPM1 EX1 - INT1 - EX2 - INT2 - EX3 - INT3 - EX4 with wt or mutants EX2 for in vivo splicing.	In vitro splicing and competition in HeLa cell nuclear extracts. In vivo splicing into smooth muscle cells (SMCs) and HeLa cells.	UV crosslink, competition assay, Western blot, EMSA using EX2 alpha-TM and purified proteins or HeLa nuclear extracts.
SC35	GUAUUCUA	7	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	GGCCUCC	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	GGCCCCUG	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	GGAUGGAG	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	GACCGGUG	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	UGUUACUA	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	GACUAGAA	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	AGCCUCAG	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	GGCCCACA	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	GGACGCUG	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	CGCUGCUA	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	GUUUCGAG	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	GAGCACUG	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	GGUCGCCG	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	GGUUAAUG	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	GGCUGAUG	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	GGCUCGUG	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	GGUCAGUG	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	GAAUACCG	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	GGCUCCAA	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	GGACUGUA	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	GACUCAAG	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	GAUCCCCG	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	GGAUCCGG	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	GGUUGUUG	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	GUCCUCCG	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	GAUCGCUG	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	GGCCGCAG	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	GGUUGGCG	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	AGCUCCCA	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	GGACCGUA	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	GUCCUCAG	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	GUCCCCUG	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	GUCUAACG	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	CGCCCUUG	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	GUUCUGUA	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	GACCUGCG	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	UGCUGUU	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	9858550	Schaal TD, Maniatis T. (1999) Multiple distinct splicing enhancers in the protein-coding sequences of a constitutively spliced pre-mRNA. Mol Cell Biol. 19(1): 261-73.		Synthesized oligos for UV-crosslink. Construct of beta-globin [3043] EX1 - INT1 - EX2. Construct and mutants of beta-globin [3043] EX3 - INT3 -partial_EX4 - EX2 for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	UV crosslink and SDS-PAGE with HeLa S100 and nuclear extracts.
SC35	UGCGGUC	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10022858	Schaal TD, Maniatis T. (1999) Selection and characterization of pre-mRNA splicing enhancers: identification of novel SR protein-specific enhancer sequences. Mol Cell Biol. 19(3): 1705-1719.		Constructs of Drosophila dsx [40940] EX3 - INT3 - EX4 mutated by inserting 18nt randomized in EX4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa nuclear extracts. Winners are confirmed by in vitro splicing in HeLa S100 extracts.	SELEX winner confermed by immublotting in Hela nuclear extracts.
SC35	UGCCGCC	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10022858	Schaal TD, Maniatis T. (1999) Selection and characterization of pre-mRNA splicing enhancers: identification of novel SR protein-specific enhancer sequences. Mol Cell Biol. 19(3): 1705-1719.		Constructs of Drosophila dsx [40940] EX3 - INT3 - EX4 mutated by inserting 18nt randomized in EX4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa nuclear extracts. Winners are confirmed by in vitro splicing in HeLa S100 extracts.	SELEX winner confermed by immublotting in Hela nuclear extracts.
SC35	ACGAGAGUU	3	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SC35	AGAAGCGGA	3	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SC35	AGCAGAGAU	3	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SC35	AGCAGAGGA	3	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SC35	AGCAGAGUA	3	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SC35	AGCAGUGUU	3	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SC35	AGCCGAGAA	3	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SC35	AGCGGAGAA	3	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SC35	AGGAGAAUA	3	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SC35	AGGAGAAUG	3	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SC35	AGGAGAUAA	3	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SC35	AGGAGCGUG	3	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SC35	AGGAGUAUC	3	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SC35	AGGAGUGAC	3	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SC35	AGGCGAGCA	3	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SC35	AGGCGAGUA	3	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SC35	AGGCGUGUU	3	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SC35	CGGAGAGAA	3	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SC35	GACGGAGUA	3	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SC35	GAUGGAGGA	3	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SC35	GCUCGAGUA	3	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SC35	GUACGAGGA	3	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SC35	GUUCCAGAU	3	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SC35	GUUCCAGGU	3	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SC35	GUUCCAGUU	3	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SC35	GUUCGAGUG	3	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SC35	GUUCGAGUU	3	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SC35	UGCAGAGUG	3	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SC35	AGGAGAGGU	6	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SC35	AGCAGAGUU	10	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SC35	GUUCGAGUA	10	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SC35	GUAAGUACGC	8	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	14703516	Zahler AM, Damgaard CK, Kjems J, Caputi M. (2004) SC35 and heterogeneous nuclear ribonucleoprotein A/B proteins bind to a juxtaposed exonic splicing enhancer/exonic splicing silencer element to regulate HIV-1 tat exon 2 splicing. J Biol Chem. 279(11): 10077-84.		Constructs of HIV-1 Tat [155871] EX2.	In Vitro Splicing with HeLa S100 or nuclear extracts.	RNA Affinity Chromatography Assays, SDS-PAGE in HeLa cell nuclear extracts, Nuclear Extract Depletion by high affinity RNA. SDS-PAGE, immunoblotting, RNA Footprinting Analysis.
SC35	CUAGACUAGA	4	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	14703516	Zahler AM, Damgaard CK, Kjems J, Caputi M. (2004) SC35 and heterogeneous nuclear ribonucleoprotein A/B proteins bind to a juxtaposed exonic splicing enhancer/exonic splicing silencer element to regulate HIV-1 tat exon 2 splicing. J Biol Chem. 279(11): 10077-84.		Constructs of HIV-1 Tat [155871] EX2.	In Vitro Splicing with HeLa S100 or nuclear extracts.	RNA Affinity Chromatography Assays, SDS-PAGE in HeLa cell nuclear extracts, Nuclear Extract Depletion by high affinity RNA. SDS-PAGE, immunoblotting, RNA Footprinting Analysis.
SC35	AUCCCGUG	6	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	11779509	Zhu J, Mayeda A, Krainer AR. (2001) Exon identity established through differential antagonism between exonic splicing silencer-bound hnRNP A1 and enhancer-bound SR proteins. Mol Cell. 8(6): 1351-1361.		Sequence of HIV-1 Tat [155871] EX3.	In Vitro Splicing with HeLa S100 and HeLa nuclear extracts.	UV crosslink, immunoprecipitation, affinity depletion, SDS-PAGE and Western blot.
SC35	CACCUCCG	6	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	11779509	Zhu J, Mayeda A, Krainer AR. (2001) Exon identity established through differential antagonism between exonic splicing silencer-bound hnRNP A1 and enhancer-bound SR proteins. Mol Cell. 8(6): 1351-1361.		Sequence of HIV-1 Tat [155871] EX3.	In Vitro Splicing with HeLa S100 and HeLa nuclear extracts.	UV crosslink, immunoprecipitation, affinity depletion, SDS-PAGE and Western blot.
SC35	GAAUCCCG	6	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	11779509	Zhu J, Mayeda A, Krainer AR. (2001) Exon identity established through differential antagonism between exonic splicing silencer-bound hnRNP A1 and enhancer-bound SR proteins. Mol Cell. 8(6): 1351-1361.		Sequence of HIV-1 Tat [155871] EX3.	In Vitro Splicing with HeLa S100 and HeLa nuclear extracts.	UV crosslink, immunoprecipitation, affinity depletion, SDS-PAGE and Western blot.
SC35	GAUUAGUG	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	11779509	Zhu J, Mayeda A, Krainer AR. (2001) Exon identity established through differential antagonism between exonic splicing silencer-bound hnRNP A1 and enhancer-bound SR proteins. Mol Cell. 8(6): 1351-1361.		Sequence of HIV-1 Tat [155871] EX3.	In Vitro Splicing with HeLa S100 and HeLa nuclear extracts.	UV crosslink, immunoprecipitation, affinity depletion, SDS-PAGE and Western blot.
SC35	GGAGGA	-5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	12612063	Rooke N, Markovtsov V, Cagavi E, Black DL. (2003) Roles for SR proteins and hnRNP A1 in the regulation of c-src exon N1. Mol Cell Biol. 23(6):1874-1884.		Construct of c-src [20779] EX_N1.	In vitro splicing with Weri-1, Weri-1 S100 and HeLa nuclear extracts.	UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts.
SC35	GAAGAAGA	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	14729981	Buratti E, Muro AF, Giombi M, Gherbassi D, Iaconcig A, Baralle FE. (2004) RNA folding affects the recruitment of SR proteins by mouse and human polypurinic enhancer elements in the fibronectin EDA exon. Mol Cell Biol. 24(3):1387-1400.		Sequences of fibronectin FN1 [2335] EX_EDA and mutants		UV crosslink, competition assay, immunoprecipitation with HeLa nuclear extracts
SC35	AGGAGGA	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	CGCAGGU	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	GACCCGG	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	CGCAGGG	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	CAGAGGU	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SC35	AGCUGUU	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	9858550	Schaal TD, Maniatis T. (1999) Multiple distinct splicing enhancers in the protein-coding sequences of a constitutively spliced pre-mRNA. Mol Cell Biol. 19(1): 261-73.		Synthesized oligos for UV-crosslink. Construct of beta-globin [3043] EX1 - INT1 - EX2. Construct and mutants of beta-globin [3043] EX3 - INT3 -partial_EX4 - EX2 for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	UV crosslink and SDS-PAGE with HeLa S100 and nuclear extracts.
SC35	CAGUAGA	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	14703516	Zahler AM, Damgaard CK, Kjems J, Caputi M. (2004) SC35 and heterogeneous nuclear ribonucleoprotein A/B proteins bind to a juxtaposed exonic splicing enhancer/exonic splicing silencer element to regulate HIV-1 tat exon 2 splicing. J Biol Chem. 279(11): 10077-84.		Constructs of HIV-1 Tat [155871] EX2.	In Vitro Splicing with HeLa S100 or nuclear extracts.	RNA Affinity Chromatography Assays, SDS-PAGE in HeLa cell nuclear extracts, Nuclear Extract Depletion by high affinity RNA. SDS-PAGE, immunoblotting, RNA Footprinting Analysis.
SC35	GAUUGAUG	-5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	19843576	Chandradas S, Deikus G, Tardos JG, Bogdanov VY. (2010) Antagonistic roles of four SR proteins in the biosynthesis of alternatively spliced tissue factor transcripts in monocytic cells. J Leukoc Biol. 87(1):147-152.	In this context, SRp40 and SC35 antagonize other SR proteins by competing for certain sites in exon 5, thereby promoting TF (tissue factor) exon 5 exclusion.	Construct of F3 [2152] EX4-INT4-EX5-INT5-EX6 and mutants	In vivo splicing in THP-1 cells.	Mutagenesis, splicing assays, EMSA, Immunoblot.
SC35	GAUUCCCU	-5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	19843576	Chandradas S, Deikus G, Tardos JG, Bogdanov VY. (2010) Antagonistic roles of four SR proteins in the biosynthesis of alternatively spliced tissue factor transcripts in monocytic cells. J Leukoc Biol. 87(1):147-152.	In this context, SRp40 and SC35 antagonize other SR proteins by competing for certain sites in exon 5, thereby promoting TF (tissue factor) exon 5 exclusion.	Construct of F3 [2152] EX4-INT4-EX5-INT5-EX6 and mutants	In vivo splicing in THP-1 cells.	Mutagenesis, splicing assays, EMSA, Immunoblot.
SC35	CCCCUCUCUCUAUCGCUGUCUCUUGAGCCACGC	-5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	9130721	Gallego ME, Gattoni R, Stevenin J, Marie J, Expert-Bezancon A. (1997) The SR splicing factors ASF/SF2 and SC35 have antagonistic effects on intronic enhancer-dependent splicing of the beta-tropomyosin alternative exon 6A. EMBO J. 16(7):1772-1784.		Construct of chicken TPM3 [396430] EX6A - INT6 - EX7.	In vitro splicing with HeLa NE	In vitro splicing assay with RNA competitors, UV cross-linking both with HeLa extracts and recombinant proteins.
SC35	GAUCCCUUUCUCUUUCUCUCUCCCUCCCUGUCUUUCCCU	-5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	9130721	Gallego ME, Gattoni R, Stevenin J, Marie J, Expert-Bezancon A. (1997) The SR splicing factors ASF/SF2 and SC35 have antagonistic effects on intronic enhancer-dependent splicing of the beta-tropomyosin alternative exon 6A. EMBO J. 16(7):1772-1784.		Construct of chicken TPM3 [396430] EX6A - INT6 - EX7.	In vitro splicing with HeLa NE	In vitro splicing assay with RNA competitors, UV cross-linking both with HeLa extracts and recombinant proteins.
SC35	AGAGGAAGGCGA	7	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	11096110	Lejeune F, Cavaloc Y, Stevenin J. (2001) Alternative splicing of intron 3 of the serine/arginine-rich protein 9G8 gene. Identification of flanking exonic splicing enhancers and involvement of 9G8 as a trans-acting factor. J Biol Chem. 276(11):7850-7858.		Sequences deriving from SFRS7 [6432] and constructs of SFRS7 [6432] EX3 - INT3 - EX4.	In vitro splicing with HeLa extracts.	UV cross-linking, immunoprecipitation, complementation assay in HeLa extracts.
SC35	AGGAGCAGGGGACGAAG	7	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	11096110	Lejeune F, Cavaloc Y, Stevenin J. (2001) Alternative splicing of intron 3 of the serine/arginine-rich protein 9G8 gene. Identification of flanking exonic splicing enhancers and involvement of 9G8 as a trans-acting factor. J Biol Chem. 276(11):7850-7858.		Sequences deriving from SFRS7 [6432] and constructs of SFRS7 [6432] EX3 - INT3 - EX4.	In vitro splicing with HeLa extracts.	UV cross-linking, immunoprecipitation, complementation assay in HeLa extracts.
SC35	GAAGAAGAA	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	11096110	Lejeune F, Cavaloc Y, Stevenin J. (2001) Alternative splicing of intron 3 of the serine/arginine-rich protein 9G8 gene. Identification of flanking exonic splicing enhancers and involvement of 9G8 as a trans-acting factor. J Biol Chem. 276(11):7850-7858.		Sequences deriving from SFRS7 [6432] and constructs of SFRS7 [6432] EX3 - INT3 - EX4.	In vitro splicing with HeLa extracts.	UV cross-linking, immunoprecipitation, complementation assay in HeLa extracts.
SC35	AGGGUUGAGGGGAGCAGGGU	7	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	15208309	Expert-Bezancon A, Sureau A, Durosay P, Salesse R, Groeneveld H, Lecaer JP, Marie J. (2004) hnRNP A1 and the SR proteins ASF/SF2 and SC35 have antagonistic functions in splicing of beta-tropomyosin exon 6B. J Biol Chem. 279(37):38249-38259.		Sequences deriving from TPM3 [396430] and synthesized sequences. Construct of chicken TPM3 [396430] EX6B - INT7 - EX7.	In vitro splicing in HeLa NE	EMSA with recombinant protein. RNA affinity chromatography and immunoprecipitation in HeLa NE
SC35	GGUGGGGCCGGGGCCAAGG	-2	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	15798212	Gabut M, Mine M, Marsac C, Brivet M, Tazi J, Soret J. (2005) The SR protein SC35 is responsible for aberrant splicing of the E1alpha pyruvate dehydrogenase mRNA in a case of mental retardation with lactic acidosis. Mol Cell Biol. 25(8):3286-3294.		Construct of wt and mutated PDHA1 [5160] EX7-INT7-EX8	In vitro splicing in HeLa NE	RNA affinity purification with HeLa NE, Western blot. UV cross-linking with HeLa NE or S100 or recombinant protein, siRNA .
SC35	GGUGGGGCCGGAGCCAAGG	-10	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	15798212	Gabut M, Mine M, Marsac C, Brivet M, Tazi J, Soret J. (2005) The SR protein SC35 is responsible for aberrant splicing of the E1alpha pyruvate dehydrogenase mRNA in a case of mental retardation with lactic acidosis. Mol Cell Biol. 25(8):3286-3294.		Construct of wt and mutated PDHA1 [5160] EX7-INT7-EX8	In vitro splicing in HeLa NE	RNA affinity purification with HeLa NE, Western blot. UV cross-linking with HeLa NE or S100 or recombinant protein, siRNA .
SC35	GAGGAG	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	16990281	Hallay H, Locker N, Ayadi L, Ropers D, Guittet E, Branlant C. (2006) Biochemical and NMR study on the competition between proteins SC35, SRp40, and heterogeneous nuclear ribonucleoprotein A1 at the HIV-1 Tat exon 2 splicing site. J Biol Chem. 281(48):37159-37174.		Sequences deriving from HIV-1 Tat [155871]		Competition assays with recombinant protein
SC35	CGAGAGCGUCGGUAUUAAGCGGGGGAGAAUUAGAUAAAUG	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
SC35	CGAGAGCGUCGGUAUUAAGCGGAUCCGAAUUAGAUAAAUG	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
SC35	UGUGUCACUGUCUGGUUC	1	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	18945760	Jia R, Liu X, Tao M, Kruhlak M, Guo M, Meyers C, Baker CC, Zheng ZM. (2009) Control of the papillomavirus early-to-late switch by differentially expressed SRp20. J Virol. 83(1):167-180.		Sequences deriving from BPV-1 and HPV-16 mRNAs.		EMSA, immunoprecipitation with HEK293 NE, U20S NE and U20S total cell extract.
SC35	GGCAGGAAGAAGAGGAGCA	7	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	18945760	Jia R, Liu X, Tao M, Kruhlak M, Guo M, Meyers C, Baker CC, Zheng ZM. (2009) Control of the papillomavirus early-to-late switch by differentially expressed SRp20. J Virol. 83(1):167-180.		Sequences deriving from BPV-1 and HPV-16 mRNAs.		EMSA, immunoprecipitation with HEK293 NE, U20S NE and U20S total cell extract.
SC35	CCAGACACCGGAAACCCCUGCCACACCAC	4	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	18945760	Jia R, Liu X, Tao M, Kruhlak M, Guo M, Meyers C, Baker CC, Zheng ZM. (2009) Control of the papillomavirus early-to-late switch by differentially expressed SRp20. J Virol. 83(1):167-180.		Sequences deriving from BPV-1 and HPV-16 mRNAs.		EMSA, immunoprecipitation with HEK293 NE, U20S NE and U20S total cell extract.
SC35	GGGACCUGCAGAGACUGUAA	5	Gene Name and Synonymous: SFRS2, splicing factor arginine/serine-rich 2, SC-35, SFRS2A, SRp30b, PR264. SC35 accelerates transcriptional elongation (co-transcriptional splicing) (PMID: 18641664).	22434879	Zubovic L, Baralle M, Baralle FE. (2012) Mutually exclusive splicing regulates the Nav 1.6 sodium channel function through a combinatorial mechanism that involves three distinct splicing regulatory elements and their ligands. Nucleic Acids Res. 40(13):6255-6269.		Sequences deriving from SCN8A [6334]. Constructs of wt or mutated SCN8A [6334] EX17 - INT17 - EX18N - INT18 - EX18A - INT18 - EX19	In vivo splicing in HeLa	Pulldown, mass spectrophotometry, western blot and siRNA knockdown with HeLa.
SF1	UACUAAC	-10	Gene Name and Synonymous: SF1, splicing factor 1, ZFM1, ZNF162, D11S636. Gomafu lncRNA UACUAAC repeats bind to mouse SF1 with a higher affinity than the mammalian branch point consensus regulating splicing efficiency by changing the splicing factors nuclear level (PMID: 21463453)	9182766	Berglund JA, Chua K, Abovich N, Reed R, Rosbash M. (1997) The splicing factor BBP interacts specifically with the pre-mRNA branchpoint sequence UACUAAC. Cell. 89(5):781-787.		22 nt sequences containing yeast rp51A [854984] natural branchpoint sequence surrounded from the intron.		EMSA, Filter Binding Assay using recombinant protein with WT and mutants sequences.
SF1	UGCUAAC	-5	Gene Name and Synonymous: SF1, splicing factor 1, ZFM1, ZNF162, D11S636. Gomafu lncRNA UACUAAC repeats bind to mouse SF1 with a higher affinity than the mammalian branch point consensus regulating splicing efficiency by changing the splicing factors nuclear level (PMID: 21463453)	9182766	Berglund JA, Chua K, Abovich N, Reed R, Rosbash M. (1997) The splicing factor BBP interacts specifically with the pre-mRNA branchpoint sequence UACUAAC. Cell. 89(5):781-787.		22 nt sequences containing yeast rp51A [854984] natural branchpoint sequence surrounded from the intron.		EMSA, Filter Binding Assay using recombinant protein with WT and mutants sequences.
SF1	GACUAAC	-6	Gene Name and Synonymous: SF1, splicing factor 1, ZFM1, ZNF162, D11S636. Gomafu lncRNA UACUAAC repeats bind to mouse SF1 with a higher affinity than the mammalian branch point consensus regulating splicing efficiency by changing the splicing factors nuclear level (PMID: 21463453)	9182766	Berglund JA, Chua K, Abovich N, Reed R, Rosbash M. (1997) The splicing factor BBP interacts specifically with the pre-mRNA branchpoint sequence UACUAAC. Cell. 89(5):781-787.		22 nt sequences containing yeast rp51A [854984] natural branchpoint sequence surrounded from the intron.		EMSA, Filter Binding Assay using recombinant protein with WT and mutants sequences.
SF1	UACUGAC	-4	Gene Name and Synonymous: SF1, splicing factor 1, ZFM1, ZNF162, D11S636. Gomafu lncRNA UACUAAC repeats bind to mouse SF1 with a higher affinity than the mammalian branch point consensus regulating splicing efficiency by changing the splicing factors nuclear level (PMID: 21463453)	9182766	Berglund JA, Chua K, Abovich N, Reed R, Rosbash M. (1997) The splicing factor BBP interacts specifically with the pre-mRNA branchpoint sequence UACUAAC. Cell. 89(5):781-787.		22 nt sequences containing yeast rp51A [854984] natural branchpoint sequence surrounded from the intron.		EMSA, Filter Binding Assay using recombinant protein with WT and mutants sequences.
SF1	UACUAAG	-4	Gene Name and Synonymous: SF1, splicing factor 1, ZFM1, ZNF162, D11S636. Gomafu lncRNA UACUAAC repeats bind to mouse SF1 with a higher affinity than the mammalian branch point consensus regulating splicing efficiency by changing the splicing factors nuclear level (PMID: 21463453)	9182766	Berglund JA, Chua K, Abovich N, Reed R, Rosbash M. (1997) The splicing factor BBP interacts specifically with the pre-mRNA branchpoint sequence UACUAAC. Cell. 89(5):781-787.		22 nt sequences containing yeast rp51A [854984] natural branchpoint sequence surrounded from the intron.		EMSA, Filter Binding Assay using recombinant protein with WT and mutants sequences.
SF1	UAGUAAG	-5	Gene Name and Synonymous: SF1, splicing factor 1, ZFM1, ZNF162, D11S636. Gomafu lncRNA UACUAAC repeats bind to mouse SF1 with a higher affinity than the mammalian branch point consensus regulating splicing efficiency by changing the splicing factors nuclear level (PMID: 21463453)	9182766	Berglund JA, Chua K, Abovich N, Reed R, Rosbash M. (1997) The splicing factor BBP interacts specifically with the pre-mRNA branchpoint sequence UACUAAC. Cell. 89(5):781-787.		22 nt sequences containing yeast rp51A [854984] natural branchpoint sequence surrounded from the intron.		EMSA, Filter Binding Assay using recombinant protein with WT and mutants sequences.
SF1	UGCUGAC	-5	Gene Name and Synonymous: SF1, splicing factor 1, ZFM1, ZNF162, D11S636. Gomafu lncRNA UACUAAC repeats bind to mouse SF1 with a higher affinity than the mammalian branch point consensus regulating splicing efficiency by changing the splicing factors nuclear level (PMID: 21463453)	9512519	Berglund JA, Abovich N, Rosbash M. (1998) A cooperative interaction between U2AF65 and mBBP/SF1 facilitates branchpoint region recognition. Genes Dev. 12(6):858-867.		Synthesized sequences		Footprinting assay, EMSA, competition assay with purified protein
SF1	UGCUGCC	-1	Gene Name and Synonymous: SF1, splicing factor 1, ZFM1, ZNF162, D11S636. Gomafu lncRNA UACUAAC repeats bind to mouse SF1 with a higher affinity than the mammalian branch point consensus regulating splicing efficiency by changing the splicing factors nuclear level (PMID: 21463453)	9512519	Berglund JA, Abovich N, Rosbash M. (1998) A cooperative interaction between U2AF65 and mBBP/SF1 facilitates branchpoint region recognition. Genes Dev. 12(6):858-867.		Synthesized sequences		Footprinting assay, EMSA, competition assay with purified protein
SF1	UACUAAU	-10	Gene Name and Synonymous: SF1, splicing factor 1, ZFM1, ZNF162, D11S636. Gomafu lncRNA UACUAAC repeats bind to mouse SF1 with a higher affinity than the mammalian branch point consensus regulating splicing efficiency by changing the splicing factors nuclear level (PMID: 21463453)	11438677	Peled-Zehavi H, Berglund JA, Rosbash M, Frankel AD. (2001) Recognition of RNA branch point sequences by the KH domain of splicing factor 1 (mammalian branch point binding protein) in a splicing factor complex. Mol Cell Biol. 21(15):5232-5241.		Synthesized sequences		Reporter gene assay using recombinant protein
SF1	UAGUAAC	-5	Gene Name and Synonymous: SF1, splicing factor 1, ZFM1, ZNF162, D11S636. Gomafu lncRNA UACUAAC repeats bind to mouse SF1 with a higher affinity than the mammalian branch point consensus regulating splicing efficiency by changing the splicing factors nuclear level (PMID: 21463453)	11438677	Peled-Zehavi H, Berglund JA, Rosbash M, Frankel AD. (2001) Recognition of RNA branch point sequences by the KH domain of splicing factor 1 (mammalian branch point binding protein) in a splicing factor complex. Mol Cell Biol. 21(15):5232-5241.		Synthesized sequences		Reporter gene assay using recombinant protein
SF1	UACUAGC	-2	Gene Name and Synonymous: SF1, splicing factor 1, ZFM1, ZNF162, D11S636. Gomafu lncRNA UACUAAC repeats bind to mouse SF1 with a higher affinity than the mammalian branch point consensus regulating splicing efficiency by changing the splicing factors nuclear level (PMID: 21463453)	11438677	Peled-Zehavi H, Berglund JA, Rosbash M, Frankel AD. (2001) Recognition of RNA branch point sequences by the KH domain of splicing factor 1 (mammalian branch point binding protein) in a splicing factor complex. Mol Cell Biol. 21(15):5232-5241.		Synthesized sequences		Reporter gene assay using recombinant protein
SF1	UACGAAC	-1	Gene Name and Synonymous: SF1, splicing factor 1, ZFM1, ZNF162, D11S636. Gomafu lncRNA UACUAAC repeats bind to mouse SF1 with a higher affinity than the mammalian branch point consensus regulating splicing efficiency by changing the splicing factors nuclear level (PMID: 21463453)	11438677	Peled-Zehavi H, Berglund JA, Rosbash M, Frankel AD. (2001) Recognition of RNA branch point sequences by the KH domain of splicing factor 1 (mammalian branch point binding protein) in a splicing factor complex. Mol Cell Biol. 21(15):5232-5241.		Synthesized sequences		Reporter gene assay using recombinant protein
SF1	ACAGUCA	-2	Gene Name and Synonymous: SF1, splicing factor 1, ZFM1, ZNF162, D11S636. Gomafu lncRNA UACUAAC repeats bind to mouse SF1 with a higher affinity than the mammalian branch point consensus regulating splicing efficiency by changing the splicing factors nuclear level (PMID: 21463453)	11438677	Peled-Zehavi H, Berglund JA, Rosbash M, Frankel AD. (2001) Recognition of RNA branch point sequences by the KH domain of splicing factor 1 (mammalian branch point binding protein) in a splicing factor complex. Mol Cell Biol. 21(15):5232-5241.		Synthesized sequences		Reporter gene assay using recombinant protein
SF1	CACUGAC	-7	Gene Name and Synonymous: SF1, splicing factor 1, ZFM1, ZNF162, D11S636. Gomafu lncRNA UACUAAC repeats bind to mouse SF1 with a higher affinity than the mammalian branch point consensus regulating splicing efficiency by changing the splicing factors nuclear level (PMID: 21463453)	15496424	Kralovicova J, Houngninou-Molango S, Kramer A, Vorechovsky I. (2004) Branch site haplotypes that control alternative splicing. Hum Mol Genet. 13(24):3189-3202.		Construc of wt and mutant HLA-DQB1 [3119] EX3 - INT3 - EX4 - INT4 - EX5 - INT5 - EX6	In vitro splicing in HeLa and HEK293T nuclear extracts.	EMSA with recombinant protein.
SF1	CGCUGAC	-7	Gene Name and Synonymous: SF1, splicing factor 1, ZFM1, ZNF162, D11S636. Gomafu lncRNA UACUAAC repeats bind to mouse SF1 with a higher affinity than the mammalian branch point consensus regulating splicing efficiency by changing the splicing factors nuclear level (PMID: 21463453)	15496424	Kralovicova J, Houngninou-Molango S, Kramer A, Vorechovsky I. (2004) Branch site haplotypes that control alternative splicing. Hum Mol Genet. 13(24):3189-3202.		Construc of wt and mutant HLA-DQB1 [3119] EX3 - INT3 - EX4 - INT4 - EX5 - INT5 - EX6	In vitro splicing in HeLa and HEK293T nuclear extracts.	EMSA with recombinant protein.
SF1	CACCGAC	-1	Gene Name and Synonymous: SF1, splicing factor 1, ZFM1, ZNF162, D11S636. Gomafu lncRNA UACUAAC repeats bind to mouse SF1 with a higher affinity than the mammalian branch point consensus regulating splicing efficiency by changing the splicing factors nuclear level (PMID: 21463453)	15496424	Kralovicova J, Houngninou-Molango S, Kramer A, Vorechovsky I. (2004) Branch site haplotypes that control alternative splicing. Hum Mol Genet. 13(24):3189-3202.		Construc of wt and mutant HLA-DQB1 [3119] EX3 - INT3 - EX4 - INT4 - EX5 - INT5 - EX6	In vitro splicing in HeLa and HEK293T nuclear extracts.	EMSA with recombinant protein.
SF1	CACAGAC	-1	Gene Name and Synonymous: SF1, splicing factor 1, ZFM1, ZNF162, D11S636. Gomafu lncRNA UACUAAC repeats bind to mouse SF1 with a higher affinity than the mammalian branch point consensus regulating splicing efficiency by changing the splicing factors nuclear level (PMID: 21463453)	15496424	Kralovicova J, Houngninou-Molango S, Kramer A, Vorechovsky I. (2004) Branch site haplotypes that control alternative splicing. Hum Mol Genet. 13(24):3189-3202.		Construc of wt and mutant HLA-DQB1 [3119] EX3 - INT3 - EX4 - INT4 - EX5 - INT5 - EX6	In vitro splicing in HeLa and HEK293T nuclear extracts.	EMSA with recombinant protein.
SF1	AUUAAC	-5	Gene Name and Synonymous: SF1, splicing factor 1, ZFM1, ZNF162, D11S636. Gomafu lncRNA UACUAAC repeats bind to mouse SF1 with a higher affinity than the mammalian branch point consensus regulating splicing efficiency by changing the splicing factors nuclear level (PMID: 21463453)	24722255	Zong FY, Fu X, Wei WJ, Luo YG, Heiner M, Cao LJ, Fang Z, Fang R, Lu D, Ji H, Hui J. (2014) The RNA-Binding Protein QKI Suppresses Cancer-Associated Aberrant Splicing. PLoS Genet. 10(4):e1004289.		Construct of wt and mutant NUMB [8650] EX11 - INT11 - EX12 - INT12 - EX13. Constructs of wt and mutant Ad2 MINX EX1 - INT1 - EX2	In vivo splicing in HEK-293 along with QKI expression vector. In vitro splicing assays in HeLa nuclear extracts and recombinant protein.	EMSA with WT and mutated sequences and UV crosslinking with recombinant protein
SF1	ACUUAU	-5	Gene Name and Synonymous: SF1, splicing factor 1, ZFM1, ZNF162, D11S636. Gomafu lncRNA UACUAAC repeats bind to mouse SF1 with a higher affinity than the mammalian branch point consensus regulating splicing efficiency by changing the splicing factors nuclear level (PMID: 21463453)	24722255	Zong FY, Fu X, Wei WJ, Luo YG, Heiner M, Cao LJ, Fang Z, Fang R, Lu D, Ji H, Hui J. (2014) The RNA-Binding Protein QKI Suppresses Cancer-Associated Aberrant Splicing. PLoS Genet. 10(4):e1004289.		Construct of wt and mutant NUMB [8650] EX11 - INT11 - EX12 - INT12 - EX13. Constructs of wt and mutant Ad2 MINX EX1 - INT1 - EX2	In vivo splicing in HEK-293 along with QKI expression vector. In vitro splicing assays in HeLa nuclear extracts and recombinant protein.	EMSA with WT and mutated sequences and UV crosslinking with recombinant protein
SF1	ACUAAU	-5	Gene Name and Synonymous: SF1, splicing factor 1, ZFM1, ZNF162, D11S636. Gomafu lncRNA UACUAAC repeats bind to mouse SF1 with a higher affinity than the mammalian branch point consensus regulating splicing efficiency by changing the splicing factors nuclear level (PMID: 21463453)	24722255	Zong FY, Fu X, Wei WJ, Luo YG, Heiner M, Cao LJ, Fang Z, Fang R, Lu D, Ji H, Hui J. (2014) The RNA-Binding Protein QKI Suppresses Cancer-Associated Aberrant Splicing. PLoS Genet. 10(4):e1004289.		Construct of wt and mutant NUMB [8650] EX11 - INT11 - EX12 - INT12 - EX13. Constructs of wt and mutant Ad2 MINX EX1 - INT1 - EX2	In vivo splicing in HEK-293 along with QKI expression vector. In vitro splicing assays in HeLa nuclear extracts and recombinant protein.	EMSA with WT and mutated sequences and UV crosslinking with recombinant protein
SF2/ASF	AACACGA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	15302913	Chiodi I, Corioni M, Giordano M, Valgardsdottir R, Ghigna C, Cobianchi F, Xu RM, Riva S, Biamonti G. (2004) RNA recognition motif 2 directs the recruitment of SF2/ASF to nuclear stress bodies. Nucleic Acids Res. 32(14): 4127-4136.		Construct of Adenovirus E1A for in vivo splicing. Synthesized 16nt oligos for EMSA.	In vivo splicing in HeLa cells.	EMSA.
SF2/ASF	AAAGAAGAA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	11278454	Chung H , Derse D. (2001) Binding sites for Rev and ASF/SF2 map to a 55-nucleotide purine-rich exonic element in equine infectious anemia virus RNA. J Biol Chem. 276 (22): 18960-18967.		synthesized oligos		EMSA, UV crosslink competition, and immunoprecipitation in HeLa nuclear extracts.
SF2/ASF	AAAAGAGAAG	4	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9848651	Dye BT, Buvoli M, Mayer SA, Lin CH, Patton JG. (1998) Enhancer elements activate the weak 3' splice site of alpha-tropomyosin exon 2. RNA. 4(12): 1523-1536.		Contructs of tropomyosin 1 alpha TPM1 [7168] EX1 - INT1 - EX2 - INT2 - EX3 with WT and mutants competitor sequences of TPM1 EX2 for in vitro splicing. Construct of TPM1 EX1 - INT1 - EX2 - INT2 - EX3 - INT3 - EX4 with wt or mutants EX2 for in vivo splicing.	In vitro splicing and competition in HeLa cell nuclear extracts. In vivo splicing into smooth muscle cells (SMCs) and HeLa cells.	UV crosslink, competition assay, Western blot, EMSA using EX2 alpha-TM and purified proteins or HeLa nuclear extracts.
SF2/ASF	GAGGAGGA	4	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9848651	Dye BT, Buvoli M, Mayer SA, Lin CH, Patton JG. (1998) Enhancer elements activate the weak 3' splice site of alpha-tropomyosin exon 2. RNA. 4(12): 1523-1536.		Contructs of tropomyosin 1 alpha TPM1 [7168] EX1 - INT1 - EX2 - INT2 - EX3 with WT and mutants competitor sequences of TPM1 EX2 for in vitro splicing. Construct of TPM1 EX1 - INT1 - EX2 - INT2 - EX3 - INT3 - EX4 with wt or mutants EX2 for in vivo splicing.	In vitro splicing and competition in HeLa cell nuclear extracts. In vivo splicing into smooth muscle cells (SMCs) and HeLa cells.	UV crosslink, competition assay, Western blot, EMSA using EX2 alpha-TM and purified proteins or HeLa nuclear extracts.
SF2/ASF	GGAGGAC	4	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9848651	Dye BT, Buvoli M, Mayer SA, Lin CH, Patton JG. (1998) Enhancer elements activate the weak 3' splice site of alpha-tropomyosin exon 2. RNA. 4(12): 1523-1536.		Contructs of tropomyosin 1 alpha TPM1 [7168] EX1 - INT1 - EX2 - INT2 - EX3 with WT and mutants competitor sequences of TPM1 EX2 for in vitro splicing. Construct of TPM1 EX1 - INT1 - EX2 - INT2 - EX3 - INT3 - EX4 with wt or mutants EX2 for in vivo splicing.	In vitro splicing and competition in HeLa cell nuclear extracts. In vivo splicing into smooth muscle cells (SMCs) and HeLa cells.	UV crosslink, competition assay, Western blot, EMSA using EX2 alpha-TM and purified proteins or HeLa nuclear extracts.
SF2/ASF	GGAGGAG	4	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9848651	Dye BT, Buvoli M, Mayer SA, Lin CH, Patton JG. (1998) Enhancer elements activate the weak 3' splice site of alpha-tropomyosin exon 2. RNA. 4(12): 1523-1536.		Contructs of tropomyosin 1 alpha TPM1 [7168] EX1 - INT1 - EX2 - INT2 - EX3 with WT and mutants competitor sequences of TPM1 EX2 for in vitro splicing. Construct of TPM1 EX1 - INT1 - EX2 - INT2 - EX3 - INT3 - EX4 with wt or mutants EX2 for in vivo splicing.	In vitro splicing and competition in HeLa cell nuclear extracts. In vivo splicing into smooth muscle cells (SMCs) and HeLa cells.	UV crosslink, competition assay, Western blot, EMSA using EX2 alpha-TM and purified proteins or HeLa nuclear extracts.
SF2/ASF	AGGAGGA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SF2/ASF	CGCAGGU	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SF2/ASF	GACCCGG	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	10629063	Liu HX, Chew SL, Cartegni L, Zhang MQ, Krainer AR. (2000) Exonic splicing enhancer motif recognized by human SC35 under splicing conditions. Mol Cell Biol. 20(3): 1063-1071.		Constructs of mouse IgM EX_M1 - INT - EX_M2 mutated by inserting 20nt randomized in EX_M2. Construct of mouse IgM EX_C3 - INT - EX_C4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by in vitro splicing with HeLa nuclear extracts or with S100 extracts complemented by SC35.
SF2/ASF	CACAGUG	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	CAGACGU	10	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	CAGAGGA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	CAGAGGG	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	CAGAGGU	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	CAGCGGA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	CAGCGGG	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	CGCAGGG	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	CGCUCGA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	CGGACGA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	CGGACGG	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	CGGAGGU	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	CGGCCGA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	CGGCGGA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	CUCAGGU	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	CUCCGGA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	CUGACUA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	GACAGGG	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	AGACAGAGAC	4	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	12419255	Marchand V, Mereau A, Jacquenet S, Thomas D, Mougin A, Gattoni R, Stevenin J, Branlant C. (2002) A Janus splicing regulatory element modulates HIV-1 tat and rev mRNA production by coordination of hnRNP A1 cooperative binding. J Mol Biol. 323(4): 629-652.		Constructs of HIV-1 A7 3' splice site	In vitro splicing with HeLa cell nuclear or cytoplasmic S100 extracts.	Competition assay, UV crosslink, immunoprecipitation with HeLa nuclear extracts, EMSA and supershift assays.
SF2/ASF	GAAGAAGAA	4	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	12419255	Marchand V, Mereau A, Jacquenet S, Thomas D, Mougin A, Gattoni R, Stevenin J, Branlant C. (2002) A Janus splicing regulatory element modulates HIV-1 tat and rev mRNA production by coordination of hnRNP A1 cooperative binding. J Mol Biol. 323(4): 629-652.		Constructs of HIV-1 A7 3' splice site	In vitro splicing with HeLa cell nuclear or cytoplasmic S100 extracts.	Competition assay, UV crosslink, immunoprecipitation with HeLa nuclear extracts, EMSA and supershift assays.
SF2/ASF	AGAAGAAC	6	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	AGGACAGAGC	4	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	ACAAGGAC	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	ACGCGCC	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	AGAAGGAC	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	AGAUGGAC	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	AGGAAAGACC	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	AGGACGACGC	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	AGGACUGAGC	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	AGGAGAAC	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	AGGAGGAU	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	AGGAGGUAAC	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	AUGACAGAGC	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	AUGACUGAGC	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	CCGCGCA	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	CGAAGGAC	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	CGGACAGAGC	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	CGGACGAAGC	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	GACGAAC	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	GAUACGAAGC	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	GCGCGCA	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	GGAAAGAC	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	GGAACAGC	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	GGAAUGAC	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	GGACGAAU	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	GGAUGAAC	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	GUGACAGAGC	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	UAGACAGAGC	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	UCGCACA	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	UCGGGCA	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	UGAAGAAC	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	UGAUGAAC	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	UGUAGGAC	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	ACGCGAG	3	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	ACGCGCU	3	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	AUGACAGAAC	3	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	CAGACAGAGC	3	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	GAGGAAC	3	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	GGAGGAAC	3	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	UAGACAGAAC	3	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	UGGACAGAGC	3	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	ACGCGCG	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	ACGCUCA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	AGGACGGAAC	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	GAGACAGAGC	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	UUGACAGAGC	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	ACGCGCA	7	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	AGAAGAGC	7	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	AGGACGAAGC	10	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7543047	Tacke R, Manley JL. (1995) The human splicing factors ASF/SF2 and SC35 possess distinct, functionally significant RNA binding specificities. EMBO J. 14(14): 3540-3551.		Construct containing NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa nuclear and S100 extracts.	SELEX of random 20nt with recombinant protein. Confirmed by EMSA, competition assay with recombinant protein and SELEX winners. UV-crosslinking and immunoprecipitation with Hela nuclear extract or S100 extract.
SF2/ASF	GAGGAAGAA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	7651409	Ramchatesingh J, Zahler AM, Neugebauer KM, Roth MB, Cooper TA. (1995) A subset of SR proteins activates splicing of the cardiac troponin T alternative exon by direct interactions with an exonic enhancer. Mol Cell Biol. 15(9):4898-4907.		Construct of cardiac troponin T TNNT2 [7139] EX4 - INT4 - EX5	In vitro splicing in HeLa nuclear extracts.	UV crosslink, competition assay, immunoprecipitation
SF2/ASF	AAGGUG	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	12612063	Rooke N, Markovtsov V, Cagavi E, Black DL. (2003) Roles for SR proteins and hnRNP A1 in the regulation of c-src exon N1. Mol Cell Biol. 23(6):1874-1884.		Construct of c-src [20779] EX_N1.	In vitro splicing with Weri-1, Weri-1 S100 and HeLa nuclear extracts.	UV crosslink and immunoprecipitation with Weri-1 and HeLa nuclear extracts.
SF2/ASF	GGAAGAAGAUAAAGAC	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	12826680	Galiana-Arnoux D, Lejeune F, Gesnel MC, Stevenin J, Breathnach R, Del Gatto-Konczak F. (2003) The CD44 alternative v9 exon contains a splicing enhancer responsive to the SR proteins 9G8, ASF/SF2, and SRp20. J Biol Chem. 278(35):32943-32953.		Construct of CD44 [960] EX8 - INT8 - EX9 - INT9 - EX10.	In vivo splicing in SVK14 and HEK293-EBNA cells.	UV crosslink, immunoprecipitation in HeLa S100 and nuclear extracts.
SF2/ASF	GAUGAAGAG	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	10523623	Bourgeois CF, Popielarz M, Hildwein G, Stevenin J. (1999) Identification of a bidirectional splicing enhancer: differential involvement of SR proteins in 5' or 3' splice site activation. Mol Cell Biol. 19(11):7347-7356.		Construct and variants of Adenovirus E1A unit.	in vitro splicing with Hela nuclear extracts, in vivo splicing in Hela cells, in vitro complementation assays.	UV crosslink, immunoprecipitation.
SF2/ASF	AUCCAGGAGGGGAACAGA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	11751603	Smith PJ, Spurrell EL, Coakley J, Hinds CJ, Ross RJ, Krainer AR, Chew SL. (2002) An exonic splicing enhancer in human IGF-I pre-mRNA mediates recognition of alternative exon 5 by the serine-arginine protein splicing factor-2/alternative splicing factor. Endocrinology. 143(1):146-154.		Construct of IGF1 [3479] EX4 - INT4 - EX5.	In vitro splicing with HeLa nuclear extracts and cotransfection	Immunoprecipitation.
SF2/ASF	CAGACAA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	11925564	Cartegni L, Krainer AR. (2002) Disruption of an SF2/ASF-dependent exonic splicing enhancer in SMN2 causes spinal muscular atrophy in the absence of SMN1. Nat Genet. 30(4):377-384.		Construct and mutants of SMN1 [6606] and SMN2 [6607] EX6 - shortened_INT6 - EX7 - INT7 -shortened_EX8.	In vivo splicing in 293-HEK.	UV crosslink, immunoprecipitation, SDS-PAGE.
SF2/ASF	GAAGAAGA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	14729981	Buratti E, Muro AF, Giombi M, Gherbassi D, Iaconcig A, Baralle FE. (2004) RNA folding affects the recruitment of SR proteins by mouse and human polypurinic enhancer elements in the fibronectin EDA exon. Mol Cell Biol. 24(3):1387-1400.		Sequences of fibronectin FN1 [2335] EX_EDA and mutants		UV crosslink, competition assay, immunoprecipitation with HeLa nuclear extracts
SF2/ASF	CAACCGG	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CACAGCA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CACAGCG	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CACGGAC	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CAGUCGG	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CCAACCC	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CCAACCG	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CCAACGC	10	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CCAAUGG	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CCACAGA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CCACGCU	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CCACGGA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CCACUGG	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CCAUGGU	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CCCAGCC	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CCCAUGA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CCCCGAC	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CCCCGCA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CCCCGGA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CCCGACU	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CCCGUUU	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CCCUGAC	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CCCUGGA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CCGACAG	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CCGACCA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CCGACGG	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CCGAGCG	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CCGAUGA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CCGCGGA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CCGCUAU	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CCGGACG	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CCUAGGG	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CCUCGGA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CGACGCG	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CGACGGA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CGAGCGG	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CGAGGCA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CGAUGGA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CGCCGGA	10	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CGCCGUA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CGCGCAA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CGCGCCC	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CGCGGAA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CGCGGAC	10	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CGCGGAG	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CGCGGUU	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CGCGUCA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CGGAGCG	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CGGAGGA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CGGCACA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CGGCAGA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CUACGAA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CUCGUGU	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	CUGAACA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	GCCCACU	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	GCCGGAG	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	UGAACCA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16825284	Smith PJ, Zhang C, Wang J, Chew SL, Zhang MQ, Krainer AR. (2006) An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers. Hum Mol Genet. 15(16):2490-2508.		Construct of BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19 with random 7nt and 14nt inserted in EX18. Construct of SMN1 [6606] EX6 - INT6 - EX7 - INT7 - EX8 with 7nt SELEX-winners inserted in EX7.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs in HeLa S100 extract complemented by recombinant protein. Winners are confirmed by in vitro splicing in both HeLa nuclear extract and S100 extract complemented by recombinant protein.	Functional SELEX of random 7nt and 14nt with recombinant protein.
SF2/ASF	GACUGGA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	GAGACGA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	GGCACGG	10	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	GGGACGU	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	GUGACGA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	AUAGGACUGGAUCGAGUUGG	8	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	AUCGGACAGGGUCCAGCAGG	8	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	AUCGGCCGAUCUGUGAGUUA	8	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	AUGCUCCGGAAUCGGAACGG	8	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	CAAGCACAGUGACCGAGAAC	8	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	CCAGAGGGCGGAAACGUUGG	8	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	CGAUGACCCUCAGACGUAUA	8	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	CGAUGUCCCGGAGGUUUUGC	8	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	CGCCGGACGACGUGUGUUG	8	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	CGCGGUUAGGAGGAUGGAAA	8	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	CGUCGCAGGGCAGGUGGGAA	8	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	CGUGAAACUGCCCAGAGGUG	8	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	CGUGCCCACGUGUCUCAGGU	8	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	CUCCAGACGUCGUUUGUUGC	8	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	GACGUCCAGUACGCUCGAGG	8	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	GCGGACCCGGAAAGGACUAA	8	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	GGAAGUACGGGACGUGCCGG	8	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	GGCACGGCGAGACACCAUCA	8	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	GGCACGGGGAGGCACCAUCA	8	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	GGCAGAGGAGAGCCGGGACG	8	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	GGCAGCGGGCGUACCCGGAU	8	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	GGCUUGGUUCGCGGUGACGA	8	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	GGUCGCAGGUCAGGUGGGUU	8	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	GUGGGUUCGGCGGAAUCAAG	8	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	GUUGCGGAGACGACCCGAGC	8	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	UGACAGCGGAAGGUACAGUG	8	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	UGAGUGCGCGGAUAGACUGACUA	8	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	UUCGGACGGGCUAGGGAUGG	8	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SF2/ASF	UGGAAAG	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	17144911	Kammler S, Otte M, Hauber I, Kjems J, Hauber J, Schaal H. (2006) The strength of the HIV-1 3' splice sites affects Rev function. Retrovirology. 3:89.		Constructs of HIV-1 Tat [155871] EX2.	In vivo splicing in HeLa-T4+ cells.	Mutational analysis and pull-down assay and immunoblot with HeLa nuclear extract.
SF2/ASF	UAUUACGGAAU	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	19111562	Goncalves V, Theisen P, Antunes O, Medeira A, Ramos JS, Jordan P, Isidro G. (2009) A missense mutation in the APC tumor suppressor gene disrupts an ASF/SF2 splicing enhancer motif and causes pathogenic skipping of exon 14. Mutat Res. 662(1-2): 33-36.	In this context, SF2/ASF and SRp55 do not bind UAUUAGGGAAU. In addiction, SRp55 does not bind UAUUACGGAAU.	Construct of APC [324] INT13 - EX14 - INT14.	In vivo splicing in DLD-1 or HT29 colorectal cells.	RNA interference.
SF2/ASF	GAAGAAGAAGAAGAAGAAGAAGAAGAAGAA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	18597733	Baralle M, Pastor T, Bussani E, Pagani F. (2008) Influence of Friedreich ataxia GAA noncoding repeat expansions on pre-mRNA processing. Am J Hum Genet. 83(1): 77-88.		Synthesized sequences.		Mass spectrometry, immunoblot analysis.
SF2/ASF	GCGAGCG	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	19561594	Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol. 27(7):667-670.		Synthesized sequences		RNAcompete using recombinant protein
SF2/ASF	GAGCGAG	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	19561594	Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol. 27(7):667-670.		Synthesized sequences		RNAcompete using recombinant protein
SF2/ASF	GAGCGGA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	19561594	Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol. 27(7):667-670.		Synthesized sequences		RNAcompete using recombinant protein
SF2/ASF	AGCGAGC	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	19561594	Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol. 27(7):667-670.		Synthesized sequences		RNAcompete using recombinant protein
SF2/ASF	CGGAAGA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	18315555	Tardos JG, Eisenreich A, Deikus G, Bechhofer DH, Chandradas S, Zafar U, Rauch U, Bogdanov VY. (2008) SR proteins ASF/SF2 and SRp55 participate in tissue factor biosynthesis in human monocytic cells. J Thromb Haemost. 6(5):877-884.		Construct of F3 [2152] EX4-INT4-EX5-INT5-EX6 and mutants	In vivo splicing in THP-1 and SC cells.	Mutagenesis, splicing assays, EMSA, Immunoblot.
SF2/ASF	CAGACAG	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	18315555	Tardos JG, Eisenreich A, Deikus G, Bechhofer DH, Chandradas S, Zafar U, Rauch U, Bogdanov VY. (2008) SR proteins ASF/SF2 and SRp55 participate in tissue factor biosynthesis in human monocytic cells. J Thromb Haemost. 6(5):877-884.		Construct of F3 [2152] EX4-INT4-EX5-INT5-EX6 and mutants	In vivo splicing in THP-1 and SC cells.	Mutagenesis, splicing assays, EMSA, Immunoblot.
SF2/ASF	GGAUAC	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
SF2/ASF	GCAUAC	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
SF2/ASF	GGAUUC	7	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
SF2/ASF	GGGUAC	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
SF2/ASF	GGAUAU	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
SF2/ASF	CUGAUUUGUAUUUAUUAGACUC	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
SF2/ASF	AACAGAAAAAGAAAUAUUU	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
SF2/ASF	CUGAUUUGUACCUAUUAGAUUC	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
SF2/ASF	UACUGAAGAACAAGUAUUU	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
SF2/ASF	CCCCUCUCUCUAUCGCUGUCUCUUGAGCCACGC	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9130721	Gallego ME, Gattoni R, Stevenin J, Marie J, Expert-Bezancon A. (1997) The SR splicing factors ASF/SF2 and SC35 have antagonistic effects on intronic enhancer-dependent splicing of the beta-tropomyosin alternative exon 6A. EMBO J. 16(7):1772-1784.		Construct of chicken TPM3 [396430] EX6A - INT6 - EX7.	In vitro splicing with HeLa NE	In vitro splicing assay with RNA competitors, UV cross-linking both with HeLa extracts and recombinant proteins.
SF2/ASF	GAUCCCUUUCUCUUUCUCUCUCCCUCCCUGUCUUUCCCU	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9130721	Gallego ME, Gattoni R, Stevenin J, Marie J, Expert-Bezancon A. (1997) The SR splicing factors ASF/SF2 and SC35 have antagonistic effects on intronic enhancer-dependent splicing of the beta-tropomyosin alternative exon 6A. EMBO J. 16(7):1772-1784.		Construct of chicken TPM3 [396430] EX6A - INT6 - EX7.	In vitro splicing with HeLa NE	In vitro splicing assay with RNA competitors, UV cross-linking both with HeLa extracts and recombinant proteins.
SF2/ASF	AGGGAAAGACAGGGAGGGAGAGAGAAAGAGAAAGGGACU	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9130721	Gallego ME, Gattoni R, Stevenin J, Marie J, Expert-Bezancon A. (1997) The SR splicing factors ASF/SF2 and SC35 have antagonistic effects on intronic enhancer-dependent splicing of the beta-tropomyosin alternative exon 6A. EMBO J. 16(7):1772-1784.		Construct of chicken TPM3 [396430] EX6A - INT6 - EX7.	In vitro splicing with HeLa NE	In vitro splicing assay with RNA competitors, UV cross-linking both with HeLa extracts and recombinant proteins.
SF2/ASF	AGAGCAGG	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	9826658	Zheng ZM, Huynen M, Baker CC. (1998) A pyrimidine-rich exonic splicing suppressor binds multiple RNA splicing factors and inhibits spliceosome assembly. Proc Natl Acad Sci U S A. 95(24):14088-14093.		BPV-1 sequences.		UV cross-linking and immunoprecipitation with HeLa NE
SF2/ASF	AGAGGAAGGCGA	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	11096110	Lejeune F, Cavaloc Y, Stevenin J. (2001) Alternative splicing of intron 3 of the serine/arginine-rich protein 9G8 gene. Identification of flanking exonic splicing enhancers and involvement of 9G8 as a trans-acting factor. J Biol Chem. 276(11):7850-7858.		Sequences deriving from SFRS7 [6432] and constructs of SFRS7 [6432] EX3 - INT3 - EX4.	In vitro splicing with HeLa extracts.	UV cross-linking, immunoprecipitation, complementation assay in HeLa extracts.
SF2/ASF	AGGAGCAGGGGACGAAG	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	11096110	Lejeune F, Cavaloc Y, Stevenin J. (2001) Alternative splicing of intron 3 of the serine/arginine-rich protein 9G8 gene. Identification of flanking exonic splicing enhancers and involvement of 9G8 as a trans-acting factor. J Biol Chem. 276(11):7850-7858.		Sequences deriving from SFRS7 [6432] and constructs of SFRS7 [6432] EX3 - INT3 - EX4.	In vitro splicing with HeLa extracts.	UV cross-linking, immunoprecipitation, complementation assay in HeLa extracts.
SF2/ASF	ACAACAACUAGCCACGGAUCAU	10	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	11336712	Huang Y, Steitz JA. (2001) Splicing factors SRp20 and 9G8 promote the nucleocytoplasmic export of mRNA. Mol Cell. 7(4):899-905.		Sequences wt and mutated deriving from mouse Histone 2A		UV cross-linking and immunoprecipitation with HeLa NE
SF2/ASF	GGCGGCCAGAGGGUGUGCGGAGCUGGUGGGGAGGAGCCUGGAGAGAAGGGGCAGAGCUGGGGGCUGAGGGAGACCCCCCC	10	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	11421362	Hastings ML, Wilson CM, Munroe SH. (2001) A purine-rich intronic element enhances alternative splicing of thyroid hormone receptor mRNA. RNA. 7(6):859-874.		Constructs of THRA [7067] EX7 - INT7 - EX8 - INT8 - EX9 - INT9 - EX10	In vitro splicing with HeLa NE	UV cross-linking, northwestern blotting, immunoprecipitation with HeLa NE and recombinant proteins.
SF2/ASF	GGGGACCCGACAGGCCCGAAGGAAUAGAAGAAGAAGGUGGAGAGAGAGACAGAGA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	11575921	Tange TO, Kjems J. (2001) SF2/ASF binds to a splicing enhancer in the third HIV-1 tat exon and stimulates U2AF binding independently of the RS domain. J Mol Biol. 312(4):649-662.		Constructs of wt and mutants of Tat [155871] EX2 - INT2 - EX3	In vitro splicing with HeLa NE and recombinant protein	EMSA with recombinant protein, UV cross-linking with HeLa NE.
SF2/ASF	AGGGUUGAGGGGAGCAGGGU	7	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	15208309	Expert-Bezancon A, Sureau A, Durosay P, Salesse R, Groeneveld H, Lecaer JP, Marie J. (2004) hnRNP A1 and the SR proteins ASF/SF2 and SC35 have antagonistic functions in splicing of beta-tropomyosin exon 6B. J Biol Chem. 279(37):38249-38259.		Sequences deriving from TPM3 [396430] and synthesized sequences. Construct of chicken TPM3 [396430] EX6B - INT7 - EX7.	In vitro splicing in HeLa NE	EMSA with recombinant protein. RNA affinity chromatography and immunoprecipitation in HeLa NE
SF2/ASF	GGUGGGGCCGGGGCCAAGG	-5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	15798212	Gabut M, Mine M, Marsac C, Brivet M, Tazi J, Soret J. (2005) The SR protein SC35 is responsible for aberrant splicing of the E1alpha pyruvate dehydrogenase mRNA in a case of mental retardation with lactic acidosis. Mol Cell Biol. 25(8):3286-3294.		Construct of wt and mutated PDHA1 [5160] EX7-INT7-EX8	In vitro splicing in HeLa NE	RNA affinity purification with HeLa NE, Western blot. UV cross-linking with HeLa NE or S100 or recombinant protein, siRNA .
SF2/ASF	GGUGGGGCCGGAGCCAAGG	-5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	15798212	Gabut M, Mine M, Marsac C, Brivet M, Tazi J, Soret J. (2005) The SR protein SC35 is responsible for aberrant splicing of the E1alpha pyruvate dehydrogenase mRNA in a case of mental retardation with lactic acidosis. Mol Cell Biol. 25(8):3286-3294.		Construct of wt and mutated PDHA1 [5160] EX7-INT7-EX8	In vitro splicing in HeLa NE	RNA affinity purification with HeLa NE, Western blot. UV cross-linking with HeLa NE or S100 or recombinant protein, siRNA .
SF2/ASF	GGGAGGAAGAAAUAGAAGAUGCAGAAGAGG	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16000324	Venables JP, Bourgeois CF, Dalgliesh C, Kister L, Stevenin J, Elliott DJ. (2005) Up-regulation of the ubiquitous alternative splicing factor Tra2beta causes inclusion of a germ cell-specific exon. Hum Mol Genet. 14(16):2289-22303.		Constructs of wt or mutated HBB [3043]_EX2 - HIPK3 [10114]_INT3 - HIPK3 [10114]_EX3bis - HIPK3 [10114]_INT3 - HBB [3043]_ EX3. Sequences deriving from HIPK3 [10114].	In vivo splicing in HEK293 cells.	Pulldown assay and western blot with HeLa NE
SF2/ASF	GGUUUCAGACAAAAUCA	10	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16385450	Cartegni L, Hastings ML, Calarco JA, de Stanchina E, Krainer AR. (2006) Determinants of exon 7 splicing in the spinal muscular atrophy genes, SMN1 and SMN2. Am J Hum Genet. 78(1):63-77.		Constructs of SMN1 [6606] and SMN2 [6607] EX6 - INT6 - EX7 - INT7 - EX8	In vitro splicing in HeLa	RNA affinity chromatography with HeLa NE, western blot.
SF2/ASF	UAUGGAGGAUUCACUGUACAGAAUGAAGCCAACAAA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	16611940	Spena S, Tenchini ML, Buratti E. (2006) Cryptic splice site usage in exon 7 of the human fibrinogen Bbeta-chain gene is regulated by a naturally silent SF2/ASF binding site within this exon. RNA. 12(6):948-958.		Sequences deriving from FGB [2244]		UV cross-linking, immunoprecipitation in HeLa NE
SF2/ASF	CGAGAGCGUCGGUAUUAAGCGGGGGAGAAUUAGAUAAAUG	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
SF2/ASF	CGAGAGCGUCGGUAUUAAGCGGAUCCGAAUUAGAUAAAUG	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	17337441	Schaub MC, Lopez SR, Caputi M. (2007) Members of the heterogeneous nuclear ribonucleoprotein H family activate splicing of an HIV-1 splicing substrate by promoting formation of ATP-dependent spliceosomal complexes. J Biol Chem. 282(18):13617-13626.		Synthesized sequences		RNA-affinity chromatography assays with HeLa NE and immunoblotting or with recombinant protein.
SF2/ASF	UUACAUGAGCAUUAGGAGA	-5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	17576688	Buratti E, Stuani C, De Prato G, Baralle FE. (2007) SR protein-mediated inhibition of CFTR exon 9 inclusion: molecular characterization of the intronic splicing silencer. Nucleic Acids Res. 35(13):4359-4368.		Sequences deriving from CFTR [1080]. Constructs of CFTR [1080] INT8 - EX9 - INT9.	In vivo splicing in Hep3B	UV cross-linking, immunoprecipitation with HeLa NE
SF2/ASF	CACACGA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	17668007	Tintaru AM, Hautbergue GM, Hounslow AM, Hung ML, Lian LY, Craven CJ, Wilson SA. (2007) Structural and functional analysis of RNA and TAP binding to SF2/ASF. EMBO Rep. 8(8):756-762.		Synthesized oligos		UV cross-linking, chemical shift mapping (NMR) with recombinant protein.
SF2/ASF	GCACCUGAUGGUGAAGAAGACACUGCAGAGC	8	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	18391021	Goina E, Skoko N, Pagani F. (2008) Binding of DAZAP1 and hnRNPA1/A2 to an exonic splicing silencer in a natural BRCA1 exon 18 mutant. Mol Cell Biol. 28(11):3850-3860.		Sequences deriving from FN1 [2335] and BRCA1 [672]. Constructs of wt and mutant BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19.	In vivo splicing in HeLa.	Pulldown assay, western blot with HeLa NE and EMSA with recombinant protein. siRNA.
SF2/ASF	UGCAGAUGCUGAGUUUGUGU	3	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	18391021	Goina E, Skoko N, Pagani F. (2008) Binding of DAZAP1 and hnRNPA1/A2 to an exonic splicing silencer in a natural BRCA1 exon 18 mutant. Mol Cell Biol. 28(11):3850-3860.		Sequences deriving from FN1 [2335] and BRCA1 [672]. Constructs of wt and mutant BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19.	In vivo splicing in HeLa.	Pulldown assay, western blot with HeLa NE and EMSA with recombinant protein. siRNA.
SF2/ASF	UGCAGAUGCUUAGUUUGUGU	3	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	18391021	Goina E, Skoko N, Pagani F. (2008) Binding of DAZAP1 and hnRNPA1/A2 to an exonic splicing silencer in a natural BRCA1 exon 18 mutant. Mol Cell Biol. 28(11):3850-3860.		Sequences deriving from FN1 [2335] and BRCA1 [672]. Constructs of wt and mutant BRCA1 [672] EX17 - INT17 - EX18 - INT18 - EX19.	In vivo splicing in HeLa.	Pulldown assay, western blot with HeLa NE and EMSA with recombinant protein. siRNA.
SF2/ASF	GGCAGGAAGAAGAGGAGCA	10	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	18945760	Jia R, Liu X, Tao M, Kruhlak M, Guo M, Meyers C, Baker CC, Zheng ZM. (2009) Control of the papillomavirus early-to-late switch by differentially expressed SRp20. J Virol. 83(1):167-180.		Sequences deriving from BPV-1 and HPV-16 mRNAs.		EMSA, immunoprecipitation with HEK293 NE, U20S NE and U20S total cell extract.
SF2/ASF	CCAGACACCGGAAACCCCUGCCACACCAC	4	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	18945760	Jia R, Liu X, Tao M, Kruhlak M, Guo M, Meyers C, Baker CC, Zheng ZM. (2009) Control of the papillomavirus early-to-late switch by differentially expressed SRp20. J Virol. 83(1):167-180.		Sequences deriving from BPV-1 and HPV-16 mRNAs.		EMSA, immunoprecipitation with HEK293 NE, U20S NE and U20S total cell extract.
SF2/ASF	AAAGGACAAAGGACAAA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	8769651	Lynch KW, Maniatis T. (1996) Assembly of specific SR protein complexes on distinct regulatory elements of the Drosophila doublesex splicing enhancer. Genes Dev. 10(16):2089-2101.		Sequences deriving from D. melanogaster dsx [40940].		UV-cross link, immunoprecipitation with HeLa extracts.
SF2/ASF	GACGACGAGGAGCAGCAG	8	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	11454855	Tian H, Kole R. (2001) Strong RNA splicing enhancers identified by a modified method of cycled selection interact with SR protein. J Biol Chem. 276(36):33833-33839.		Synthesized sequences and sequences deriving from S. cerevisiae URA3 [856692]. Constructs of URA3 [856692] EX1 - INT1 - EX2 - INT2 - EX3 (sequence inserted in EX2).	In vitro splicing with HeLa NE	Filter binding assay, UV cross-linking and immunoprecipitation with HeLa NE
SF2/ASF	GACGACUCAGCAG	4	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	11454855	Tian H, Kole R. (2001) Strong RNA splicing enhancers identified by a modified method of cycled selection interact with SR protein. J Biol Chem. 276(36):33833-33839.		Synthesized sequences and sequences deriving from S. cerevisiae URA3 [856692]. Constructs of URA3 [856692] EX1 - INT1 - EX2 - INT2 - EX3 (sequence inserted in EX2).	In vitro splicing with HeLa NE	Filter binding assay, UV cross-linking and immunoprecipitation with HeLa NE
SF2/ASF	GUUGGAGAAACGUACGGUAAGGAUAUAACCUCCCGGGGCAAAGACAAGCCGAUUGCC	10	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	19602482	Goncalves V, Matos P, Jordan P. (2009) Antagonistic SR proteins regulate alternative splicing of tumor-related Rac1b downstream of the PI3-kinase and Wnt pathways. Hum Mol Genet. 18(19):3696-3707.		Sequences deriving from RAC1 [5879]. Construcs of RAC1 [5879] EX3 - INT3 - EX3b - INT3 - EX4.	In vivo splicing in HT29	EMSA with recombinant protein and EMSA supershift with DLD-1 NE
SF2/ASF	GUUGGACAAAUGUACGGUAAGGAUAUAACCUCCCGGGGCAAAGACAAGCCGAUUGCC	1	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	19602482	Goncalves V, Matos P, Jordan P. (2009) Antagonistic SR proteins regulate alternative splicing of tumor-related Rac1b downstream of the PI3-kinase and Wnt pathways. Hum Mol Genet. 18(19):3696-3707.		Sequences deriving from RAC1 [5879]. Construcs of RAC1 [5879] EX3 - INT3 - EX3b - INT3 - EX4.	In vivo splicing in HT29	EMSA with recombinant protein and EMSA supershift with DLD-1 NE
SF2/ASF	GUUGGAGAAACGUACGGCAAGGAUAUAACCUCCCGGGGCAAAGACAAGCCGAUUGCC	10	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	19602482	Goncalves V, Matos P, Jordan P. (2009) Antagonistic SR proteins regulate alternative splicing of tumor-related Rac1b downstream of the PI3-kinase and Wnt pathways. Hum Mol Genet. 18(19):3696-3707.		Sequences deriving from RAC1 [5879]. Construcs of RAC1 [5879] EX3 - INT3 - EX3b - INT3 - EX4.	In vivo splicing in HT29	EMSA with recombinant protein and EMSA supershift with DLD-1 NE
SF2/ASF	CAAAAAGAAGGAAGGUGCUCACAU	10	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	19953646	Vezain M, Saugier-Veber P, Goina E, Touraine R, Manel V, Toutain A, Fehrenbach S, Frebourg T, Pagani F, Tosi M, Martins A. (2010) A rare SMN2 variant in a previously unrecognized composite splicing regulatory element induces exon 7 inclusion and reduces the clinical severity of spinal muscular atrophy. Hum Mutat. 31(1):E1110-1125.		Sequences deriving from wt and mutated SMN2 [6607]. Constructs of SMN2 [6607] EX6 - INT6 - EX7 - INT7 - EX8.	In vivo splicing in HEK293	UV cross-linking and western blot with HeLa NE, EMSA with recombinant protein
SF2/ASF	CAAAAAGAACGAAGGUGCUCACAU	4	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	19953646	Vezain M, Saugier-Veber P, Goina E, Touraine R, Manel V, Toutain A, Fehrenbach S, Frebourg T, Pagani F, Tosi M, Martins A. (2010) A rare SMN2 variant in a previously unrecognized composite splicing regulatory element induces exon 7 inclusion and reduces the clinical severity of spinal muscular atrophy. Hum Mutat. 31(1):E1110-1125.		Sequences deriving from wt and mutated SMN2 [6607]. Constructs of SMN2 [6607] EX6 - INT6 - EX7 - INT7 - EX8.	In vivo splicing in HEK293	UV cross-linking and western blot with HeLa NE, EMSA with recombinant protein
SF2/ASF	AUUUUCCUUACAGGGUUUUAGACAAAAUCAAAAAG	2	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	18794368	Chen HH, Chang JG, Lu RM, Peng TY, Tarn WY. (2008) The RNA binding protein hnRNP Q modulates the utilization of exon 7 in the survival motor neuron 2 (SMN2) gene. Mol Cell Biol. 28(22):6929-6938.		Sequences deriving from SMN1 [6606], SMN2 [6607]. Constructs of wt and mutated SMN2 [6607] EX6 - INT6 - EX7 - INT7 - EX8.	In vivo splicing in HEK293.	RNA affinity chromatography using HeLa NE, MALDI-TOF. RNA affinity chromatography using HEK293 extracts, immunoblotting, UV cross-linking. EMSA with recombinant protein.
SF2/ASF	AUUUUCCUUACAGGGUUUCAGACAAAAUCAAAAAG	10	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	18794368	Chen HH, Chang JG, Lu RM, Peng TY, Tarn WY. (2008) The RNA binding protein hnRNP Q modulates the utilization of exon 7 in the survival motor neuron 2 (SMN2) gene. Mol Cell Biol. 28(22):6929-6938.		Sequences deriving from SMN1 [6606], SMN2 [6607]. Constructs of wt and mutated SMN2 [6607] EX6 - INT6 - EX7 - INT7 - EX8.	In vivo splicing in HEK293.	RNA affinity chromatography using HeLa NE, MALDI-TOF. RNA affinity chromatography using HEK293 extracts, immunoblotting, UV cross-linking. EMSA with recombinant protein.
SF2/ASF	GAAUGGCCGGAGGAGAUUCAGCCUGA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	20120036	Homolova K, Zavadakova P, Doktor TK, Schroeder LD, Kozich V, Andresen BS. (2010) The deep intronic c.903+469T>C mutation in the MTRR gene creates an SF2/ASF binding exonic splicing enhancer, which leads to pseudoexon activation and causes the cblE type of homocystinuria. Hum Mutat. 31(4):437-444.		Sequences deriving from wt or mutated MTRR [4552]. Constructs of wt or mutated HBB [3043]_EX1 - MTRR [4552]_INT6 - HBB [3043]_EX2 and Tat [155871]_EX1 - MTRR [4552]_INT6 - Tat [155871]_EX2.	In vivo splicing in HEK293, protein overexpression and siRNA knockdown	Pulldown and Western blotting with HeLa NE
SF2/ASF	UGCUUUGGUUAUAUUUAGCUCCAAA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	20118245	Moulton VR, Tsokos GC. (2010) Alternative splicing factor/splicing factor 2 regulates the expression of the zeta subunit of the human T cell receptor-associated CD3 complex. J Biol Chem. 285(17):12490-12496.		Sequences deriving from CD247 [919] and synthesized sequences	In vivo splicing in T cells overexpressing SF2/ASF	EMSA supershift with human T cells NE or recombinant protein
SF2/ASF	GGGACCUGCAGAGACUGUAA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	22434879	Zubovic L, Baralle M, Baralle FE. (2012) Mutually exclusive splicing regulates the Nav 1.6 sodium channel function through a combinatorial mechanism that involves three distinct splicing regulatory elements and their ligands. Nucleic Acids Res. 40(13):6255-6269.		Sequences deriving from SCN8A [6334]. Constructs of wt or mutated SCN8A [6334] EX17 - INT17 - EX18N - INT18 - EX18A - INT18 - EX19	In vivo splicing in HeLa	Pulldown, mass spectrophotometry, western blot and siRNA knockdown with HeLa.
SF2/ASF	ACGCCCUCUGCUGGAACUGA	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	20122404	Motta-Mena LB, Heyd F, Lynch KW. (2010) Context-dependent regulatory mechanism of the splicing factor hnRNP L. Mol Cell. 37(2):223-234.		Constructs of wt or mutated PTPRC [5788] EX3 - INT3 - EX4 - INT4 - EX7 and EX3 - INT3 - EX5 - INT5 - EX7.	In vitro splicing in JSL1 NE	Mutational analysis. EMSA with recombinant proteins or JSL1 NE. Pull-down and western blotting with JSL1 NE.
SF2/ASF	GGGGCCGGGGCCGGGGCCGGGGCC	8	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	23423380	Reddy K, Zamiri B, Stanley SY, Macgregor RB Jr, Pearson CE. (2013) The disease-associated r(GGGGCC)n repeat from the C9orf72 gene forms tract length-dependent uni- and multimolecular RNA G-quadruplex structures. J Biol Chem. 288(14):9860-9866.		Synthetic sequences.		EMSA with recombinant protein.
SF2/ASF	AGAAGAACAGAAGAACAGAAGAAC	4	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	23423380	Reddy K, Zamiri B, Stanley SY, Macgregor RB Jr, Pearson CE. (2013) The disease-associated r(GGGGCC)n repeat from the C9orf72 gene forms tract length-dependent uni- and multimolecular RNA G-quadruplex structures. J Biol Chem. 288(14):9860-9866.		Synthetic sequences.		EMSA with recombinant protein.
SF2/ASF	GGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCC	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	24371143	Zamiri B, Reddy K, Macgregor RB Jr, Pearson CE. (2014) TMPyP4 porphyrin distorts RNA G-quadruplex structures of the disease-associated r(GGGGCC)n repeat of the C9orf72 gene and blocks interaction of RNA-binding proteins. J Biol Chem. 289(8):4653-4659.		Synthetic sequences.		EMSA with recombinant protein.
SF2/ASF	CAGGUAAGAC	5	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	8566754	Lou H, Gagel RF, Berget SM. (1996) An intron enhancer recognized by splicing factors activates polyadenylation. Genes Dev. 10(2):208-219.		Sequences deriving from wt and mutated intron 4 of CALCA [796]		UV crosslink and immunoprecipitation
SF2/ASF	GCAGUGACGACGCGCUGCUCAAGAACUACGGUCUGCUCUCCUGCUUCCGGAAGGACCUGCAUAAGACGGAGACGUACCUGAGGGUCAUGAAGUGCCGCCGCUUCGGGGAGGCCAG	10	Gene Name and Synonymous: SFRS1, splicing factor arginine/serine-rich 1 (splicing factor 2, alternate splicing factor), ASF, SF2, SF2p33, SRp30a, MGC5228. The shuttling protein SF2/ASF binds TAP and can function as export factors (18364396).	8276242	Sun Q, Mayeda A, Hampson RK, Krainer AR, Rottman FM. (1993) General splicing factor SF2/ASF promotes alternative splicing by binding to an exonic splicing enhancer. Genes Dev. 7(12B):2598-2608.		Construct of cow GH1 [280804] EX4 - INT4 - EX5	In vitro splicing in HeLa nuclear extract, using also competing RNAs or protein excess	UV crosslinking and immunoprecipitation in HeLa nuclear extract, UV crosslinking with purified HeLa protein or recombinant protein
SLM-1	UUUUUUU	7	Gene Name and Synonymous: KHDRBS2, KH domain containing RNA binding signal transduction associated 2, SLM1, FLJ38664, MGC26664, bA535F17.1.	17764653	Rho J, Choi S, Jung CR, Im DS. (2007) Arginine methylation of Sam68 and SLM proteins negatively regulates their poly(U) RNA binding activity. Arch Biochem Biophys. 466(1):49-57.	Methylation of Sam68, SLM-1, SLM-2 proteins markedly reduced their poly(rU) binding ability in vitro.	Homopolymers		Immunoblot analysis with 293 and 293T lysates. Northwestern with recombinant protein.
SLM-2	UUUUUUU	7	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	17764653	Rho J, Choi S, Jung CR, Im DS. (2007) Arginine methylation of Sam68 and SLM proteins negatively regulates their poly(U) RNA binding activity. Arch Biochem Biophys. 466(1):49-57.	Methylation of Sam68, SLM-1, SLM-2 proteins markedly reduced their poly(rU) binding ability in vitro.	Homopolymers		Immunoblot analysis with 293 and 293T lysates. Northwestern with recombinant protein.
SLM-2	AGAUAAA	5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	19561594	Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol. 27(7):667-670.		Synthesized sequences		RNAcompete using recombinant protein
SLM-2	AUAAAAC	5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	19561594	Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol. 27(7):667-670.		Synthesized sequences		RNAcompete using recombinant protein
SLM-2	UAAAUAA	5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	19561594	Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol. 27(7):667-670.		Synthesized sequences		RNAcompete using recombinant protein
SLM-2	AAAUAAA	5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	19561594	Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol. 27(7):667-670.		Synthesized sequences		RNAcompete using recombinant protein
SLM-2	AUUAAAC	5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	19561594	Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol. 27(7):667-670.		Synthesized sequences		RNAcompete using recombinant protein
SLM-2	AUUAAA	-5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	26758068	Feracci M, Foot JN, Grellscheid SN, Danilenko M, Stehle R, Gonchar O, Kang HS, Dalgliesh C, Meyer NH, Liu Y, Lahat A, Sattler M, Eperon IC, Elliott DJ, Dominguez C. (2016) Structural basis of RNA recognition and dimerization by the STAR proteins T-STAR and Sam68. Nat Commun. 7:10355.		Synthetic sequences.		X-ray crystallography and fluorescence polarization
SLM-2	UAAU	-5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	26758068	Feracci M, Foot JN, Grellscheid SN, Danilenko M, Stehle R, Gonchar O, Kang HS, Dalgliesh C, Meyer NH, Liu Y, Lahat A, Sattler M, Eperon IC, Elliott DJ, Dominguez C. (2016) Structural basis of RNA recognition and dimerization by the STAR proteins T-STAR and Sam68. Nat Commun. 7:10355.		Synthetic sequences.		X-ray crystallography and fluorescence polarization
SLM-2	AAAUAA	-10	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	26758068	Feracci M, Foot JN, Grellscheid SN, Danilenko M, Stehle R, Gonchar O, Kang HS, Dalgliesh C, Meyer NH, Liu Y, Lahat A, Sattler M, Eperon IC, Elliott DJ, Dominguez C. (2016) Structural basis of RNA recognition and dimerization by the STAR proteins T-STAR and Sam68. Nat Commun. 7:10355.		Synthetic sequences.		X-ray crystallography and fluorescence polarization
SLM-2	AAUAAU	-5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	26758068	Feracci M, Foot JN, Grellscheid SN, Danilenko M, Stehle R, Gonchar O, Kang HS, Dalgliesh C, Meyer NH, Liu Y, Lahat A, Sattler M, Eperon IC, Elliott DJ, Dominguez C. (2016) Structural basis of RNA recognition and dimerization by the STAR proteins T-STAR and Sam68. Nat Commun. 7:10355.		Synthetic sequences.		X-ray crystallography and fluorescence polarization
SLM-2	AUAAA	-5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	26758068	Feracci M, Foot JN, Grellscheid SN, Danilenko M, Stehle R, Gonchar O, Kang HS, Dalgliesh C, Meyer NH, Liu Y, Lahat A, Sattler M, Eperon IC, Elliott DJ, Dominguez C. (2016) Structural basis of RNA recognition and dimerization by the STAR proteins T-STAR and Sam68. Nat Commun. 7:10355.		Synthetic sequences.		X-ray crystallography and fluorescence polarization
SLM-2	UUAAA	-5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	26758068	Feracci M, Foot JN, Grellscheid SN, Danilenko M, Stehle R, Gonchar O, Kang HS, Dalgliesh C, Meyer NH, Liu Y, Lahat A, Sattler M, Eperon IC, Elliott DJ, Dominguez C. (2016) Structural basis of RNA recognition and dimerization by the STAR proteins T-STAR and Sam68. Nat Commun. 7:10355.		Synthetic sequences.		X-ray crystallography and fluorescence polarization
SLM-2	CUAAA	-5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	26758068	Feracci M, Foot JN, Grellscheid SN, Danilenko M, Stehle R, Gonchar O, Kang HS, Dalgliesh C, Meyer NH, Liu Y, Lahat A, Sattler M, Eperon IC, Elliott DJ, Dominguez C. (2016) Structural basis of RNA recognition and dimerization by the STAR proteins T-STAR and Sam68. Nat Commun. 7:10355.		Synthetic sequences.		X-ray crystallography and fluorescence polarization
SLM-2	AAAAA	-5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	26758068	Feracci M, Foot JN, Grellscheid SN, Danilenko M, Stehle R, Gonchar O, Kang HS, Dalgliesh C, Meyer NH, Liu Y, Lahat A, Sattler M, Eperon IC, Elliott DJ, Dominguez C. (2016) Structural basis of RNA recognition and dimerization by the STAR proteins T-STAR and Sam68. Nat Commun. 7:10355.		Synthetic sequences.		X-ray crystallography and fluorescence polarization
SLM-2	AUAAU	-5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	26758068	Feracci M, Foot JN, Grellscheid SN, Danilenko M, Stehle R, Gonchar O, Kang HS, Dalgliesh C, Meyer NH, Liu Y, Lahat A, Sattler M, Eperon IC, Elliott DJ, Dominguez C. (2016) Structural basis of RNA recognition and dimerization by the STAR proteins T-STAR and Sam68. Nat Commun. 7:10355.		Synthetic sequences.		X-ray crystallography and fluorescence polarization
SLM-2	ACAAA	-5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	26758068	Feracci M, Foot JN, Grellscheid SN, Danilenko M, Stehle R, Gonchar O, Kang HS, Dalgliesh C, Meyer NH, Liu Y, Lahat A, Sattler M, Eperon IC, Elliott DJ, Dominguez C. (2016) Structural basis of RNA recognition and dimerization by the STAR proteins T-STAR and Sam68. Nat Commun. 7:10355.		Synthetic sequences.		X-ray crystallography and fluorescence polarization
SLM-2	AUAAC	-5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	26758068	Feracci M, Foot JN, Grellscheid SN, Danilenko M, Stehle R, Gonchar O, Kang HS, Dalgliesh C, Meyer NH, Liu Y, Lahat A, Sattler M, Eperon IC, Elliott DJ, Dominguez C. (2016) Structural basis of RNA recognition and dimerization by the STAR proteins T-STAR and Sam68. Nat Commun. 7:10355.		Synthetic sequences.		X-ray crystallography and fluorescence polarization
SLM-2	UUAAUUAAUUAAUUAACUAACUAACUAACUUUAA	-10	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	23637638	Ehrmann I, Dalgliesh C, Liu Y, Danilenko M, Crosier M, Overman L, Arthur HM, Lindsay S, Clowry GJ, Venables JP, Fort P, Elliott DJ. (2013) The tissue-specific RNA binding protein T-STAR controls regional splicing patterns of neurexin pre-mRNAs in the brain. PLoS Genet. 9(4):e1003474.		Construct of mouse Nrxn2 [18190] INT19 - EX20 - INT20	In vivo splicing in HEK293 cells, using WT or mutated minigenes	EMSA with recombinant protein
SLM-2	AAUUAAUUAAUUAAUUAACUAACUAACUAACUUUAAAAACACGAUCUUAAA	-10	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	27994030	Danilenko M, Dalgliesh C, Pagliarini V, Naro C, Ehrmann I, Feracci M, Kheirollahi-Chadegani M, Tyson-Capper A, Clowry GJ, Fort P, Dominguez C, Sette C, Elliott DJ. (2016) Binding site density enables paralog-specific activity of SLM2 and Sam68 proteins in Neurexin2 AS4 splicing control. Nucleic Acids Res.		Construct of mouse Nrxn2 [18190] INT19 - EX20 - INT20	In vivo splicing in HEK293 cells, using WT or mutated minigenes	Fluorescence polarization
SLM-2	AAUUAAUUAAUUAAUUAACCCACCCACCCACUUUAAAAACACGAUCUUAAA	-10	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	27994030	Danilenko M, Dalgliesh C, Pagliarini V, Naro C, Ehrmann I, Feracci M, Kheirollahi-Chadegani M, Tyson-Capper A, Clowry GJ, Fort P, Dominguez C, Sette C, Elliott DJ. (2016) Binding site density enables paralog-specific activity of SLM2 and Sam68 proteins in Neurexin2 AS4 splicing control. Nucleic Acids Res.		Construct of mouse Nrxn2 [18190] INT19 - EX20 - INT20	In vivo splicing in HEK293 cells, using WT or mutated minigenes	Fluorescence polarization
SLM-2	UAAAAUAAAAUAAAAUAAAA	-10	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	27994030	Danilenko M, Dalgliesh C, Pagliarini V, Naro C, Ehrmann I, Feracci M, Kheirollahi-Chadegani M, Tyson-Capper A, Clowry GJ, Fort P, Dominguez C, Sette C, Elliott DJ. (2016) Binding site density enables paralog-specific activity of SLM2 and Sam68 proteins in Neurexin2 AS4 splicing control. Nucleic Acids Res.		Construct of mouse Nrxn2 [18190] INT19 - EX20 - INT20	In vivo splicing in HEK293 cells, using WT or mutated minigenes	Fluorescence polarization
SLM-2	ACAGUUUAAAAUUUGAUAAAAUUU	-10	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	27994030	Danilenko M, Dalgliesh C, Pagliarini V, Naro C, Ehrmann I, Feracci M, Kheirollahi-Chadegani M, Tyson-Capper A, Clowry GJ, Fort P, Dominguez C, Sette C, Elliott DJ. (2016) Binding site density enables paralog-specific activity of SLM2 and Sam68 proteins in Neurexin2 AS4 splicing control. Nucleic Acids Res.		Construct of mouse Nrxn2 [18190] INT19 - EX20 - INT20	In vivo splicing in HEK293 cells, using WT or mutated minigenes	Fluorescence polarization
SLM-2	UUACAUUUAAAAGAUGAUUUAAAAA	-10	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	27994030	Danilenko M, Dalgliesh C, Pagliarini V, Naro C, Ehrmann I, Feracci M, Kheirollahi-Chadegani M, Tyson-Capper A, Clowry GJ, Fort P, Dominguez C, Sette C, Elliott DJ. (2016) Binding site density enables paralog-specific activity of SLM2 and Sam68 proteins in Neurexin2 AS4 splicing control. Nucleic Acids Res.		Construct of mouse Nrxn2 [18190] INT19 - EX20 - INT20	In vivo splicing in HEK293 cells, using WT or mutated minigenes	Fluorescence polarization
SLM-2	AAUCCAUUAAUUAAUUAACUAACUAACUAACUUUAAAAACACGAUCUUAAA	-10	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	27994030	Danilenko M, Dalgliesh C, Pagliarini V, Naro C, Ehrmann I, Feracci M, Kheirollahi-Chadegani M, Tyson-Capper A, Clowry GJ, Fort P, Dominguez C, Sette C, Elliott DJ. (2016) Binding site density enables paralog-specific activity of SLM2 and Sam68 proteins in Neurexin2 AS4 splicing control. Nucleic Acids Res.		Construct of mouse Nrxn2 [18190] INT19 - EX20 - INT20	In vivo splicing in HEK293 cells, using WT or mutated minigenes	Fluorescence polarization
SLM-2	AAUUAAUCCAUUAAUUAACUAACUAACUAACUUUAAAAACACGAUCUUAAA	-10	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	27994030	Danilenko M, Dalgliesh C, Pagliarini V, Naro C, Ehrmann I, Feracci M, Kheirollahi-Chadegani M, Tyson-Capper A, Clowry GJ, Fort P, Dominguez C, Sette C, Elliott DJ. (2016) Binding site density enables paralog-specific activity of SLM2 and Sam68 proteins in Neurexin2 AS4 splicing control. Nucleic Acids Res.		Construct of mouse Nrxn2 [18190] INT19 - EX20 - INT20	In vivo splicing in HEK293 cells, using WT or mutated minigenes	Fluorescence polarization
SLM-2	AAUUAAUUAAUCCAUUAACUAACUAACUAACUUUAAAAACACGAUCUUAAA	-10	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	27994030	Danilenko M, Dalgliesh C, Pagliarini V, Naro C, Ehrmann I, Feracci M, Kheirollahi-Chadegani M, Tyson-Capper A, Clowry GJ, Fort P, Dominguez C, Sette C, Elliott DJ. (2016) Binding site density enables paralog-specific activity of SLM2 and Sam68 proteins in Neurexin2 AS4 splicing control. Nucleic Acids Res.		Construct of mouse Nrxn2 [18190] INT19 - EX20 - INT20	In vivo splicing in HEK293 cells, using WT or mutated minigenes	Fluorescence polarization
SLM-2	AAUUAAUUAAUUAAUCCACUAACUAACUAACUUUAAAAACACGAUCUUAAA	-10	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	27994030	Danilenko M, Dalgliesh C, Pagliarini V, Naro C, Ehrmann I, Feracci M, Kheirollahi-Chadegani M, Tyson-Capper A, Clowry GJ, Fort P, Dominguez C, Sette C, Elliott DJ. (2016) Binding site density enables paralog-specific activity of SLM2 and Sam68 proteins in Neurexin2 AS4 splicing control. Nucleic Acids Res.		Construct of mouse Nrxn2 [18190] INT19 - EX20 - INT20	In vivo splicing in HEK293 cells, using WT or mutated minigenes	Fluorescence polarization
SLM-2	AAUUAAUUAAUUAAUUAACUAACUAACUAACUUCCAAAACACGAUCUUAAA	-10	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	27994030	Danilenko M, Dalgliesh C, Pagliarini V, Naro C, Ehrmann I, Feracci M, Kheirollahi-Chadegani M, Tyson-Capper A, Clowry GJ, Fort P, Dominguez C, Sette C, Elliott DJ. (2016) Binding site density enables paralog-specific activity of SLM2 and Sam68 proteins in Neurexin2 AS4 splicing control. Nucleic Acids Res.		Construct of mouse Nrxn2 [18190] INT19 - EX20 - INT20	In vivo splicing in HEK293 cells, using WT or mutated minigenes	Fluorescence polarization
SLM-2	AAUUAAUUAAUUAAUUAACUAACUAACUAACUUUAAAAACACGAUCUCCAA	-10	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	27994030	Danilenko M, Dalgliesh C, Pagliarini V, Naro C, Ehrmann I, Feracci M, Kheirollahi-Chadegani M, Tyson-Capper A, Clowry GJ, Fort P, Dominguez C, Sette C, Elliott DJ. (2016) Binding site density enables paralog-specific activity of SLM2 and Sam68 proteins in Neurexin2 AS4 splicing control. Nucleic Acids Res.		Construct of mouse Nrxn2 [18190] INT19 - EX20 - INT20	In vivo splicing in HEK293 cells, using WT or mutated minigenes	Fluorescence polarization
SLM-2	AAAAAA	-5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
SLM-2	AAAAAAUAA	-5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
SLM-2	AAAU	-2	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
SLM-2	AAAUA	-2	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
SLM-2	AAAUAU	-5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
SLM-2	AAAUUU	-2	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
SLM-2	AAUA	-2	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
SLM-2	AAUAA	-2	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
SLM-2	AAUAAA	-5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
SLM-2	AAUAUU	-5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
SLM-2	AAUUUU	-5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
SLM-2	AUAA	-2	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
SLM-2	AUUAAUUA	-5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
SLM-2	AUUUUU	-5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
SLM-2	UAAAAA	-5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
SLM-2	UAAAAAUUUU	-5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
SLM-2	UAAAAU	-5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
SLM-2	UAAAAUUUUU	-5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
SLM-2	UAAAUA	-5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
SLM-2	UAAAUAAUU	-5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
SLM-2	UAAAUAUUUU	-5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
SLM-2	UAAAUU	-5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
SLM-2	UAAAUUUUUU	-5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
SLM-2	UAAUAAAUU	-5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
SLM-2	UAAUUAAU	-5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
SLM-2	UUUAAA	-5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
SLM-2	UUUAAAUAA	-5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
SLM-2	UUUUUU	-5	Gene Name and Synonymous: KHDRBS3, KH domain containing RNA binding signal transduction associated 3, Etle, SALP, SLM2, TSTAR, T-STAR, etoile.	24096002	Foot JN, Feracci M, Dominguez C. (2014) Screening protein--single stranded RNA complexes by NMR spectroscopy for structure determination. Methods. 65(3):288-301.		Synthetic sequences.		X-ray crystallography, NMR spectroscopy and NMR chemical shift
SRm160	GGGAACAAAAGCUGGGUACCGGGCCCCCCCUCGA	5	Gene Name and Synonymous: SRRM1, serine/arginine repetitive matrix 1, POP101, SRM160, MGC39488, 160-KD.	12600940	Szymczyna BR, Bowman J, McCracken S, Pineda-Lucena A, Lu Y, Cox B, Lambermon M, Graveley BR, Arrowsmith CH, Blencowe BJ. (2003) Structure and function of the PWI motif: a novel nucleic acid-binding domain that facilitates pre-mRNA processing. Genes Dev. 17(4):461-475.		Synthesized sequences		EMSA supershift using recombinant protein
SRp20	ACAUCAUCU	6	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	ACAUCGACU	10	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	ACAUCGAUC	9	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	ACAUCGAUU	9	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	ACAUCGCUU	8	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	ACAUCGUUC	8	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	ACUACGACG	4	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	ACUACGAUC	6	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	ACUUCGACU	9	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	CGAUCGACU	6	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	UCAACGACU	8	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	UCAACGAUC	8	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	UCAACGAUU	8	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	UCAGAGAUU	6	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	UCAUCGACA	8	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	UCAUCGACU	10	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	UCAUCGAUA	8	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	UCAUCGAUC	10	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	UCAUCGCUU	8	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	UCAUCGUUC	8	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	UCUUCGAUC	9	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	AACUUUAU	6	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	ACAUUCAU	4	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	AUCAUCAU	6	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	AUCUUCAC	6	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	AUCUUCAU	9	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	CACAUCAU	9	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	CACUACAC	6	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	CACUUCAG	8	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	CACUUCAU	10	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	CGCUUCAU	9	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	CUCUUCAC	8	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	GACUUCAU	9	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	GACUUCUU	6	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	UACAUCAC	6	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	UACUUCAA	8	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	UUCAUCAC	6	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	UUCAUCAU	9	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	UUCUCCAA	6	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	UUCUUCAA	9	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	UUCUUCAU	10	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	CAUCAAC	8	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	CUACAAA	8	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	CUACAAC	10	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	CUACAAU	7	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	CUACAGC	7	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	CUACGAC	7	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	CUUCAAC	10	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	GAUCAAC	3	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	UAUCAAC	5	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	UCACAAC	5	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	UGUCAAC	5	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	UUACGAC	5	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10094314	Cavaloc Y, Bourgeois CF, Kister L, Stevenin J. (1999) The splicing factors 9G8 and SRp20 transactivate splicing through different and specific enhancers. RNA. 5(3): 468-483.		Sequences of 20 nt random for SELEX. Constructs of EXE1A_Adenovirus - partial_INT_E1A_Adenovirus - partial_INT_FN1 - EX_ED1_FN1 of FIBRONECTIN (FN1) [2335] for in vitro splicing. Construct of Sp1 unit of Adenovirus E1A for in vitro splicing.	In vitro splicing in HeLa S100 extracts.	SELEX of 20-nt random with recombinant protein. Winners confirmed by EMSA with recombinant protein, UV crosslink, complementation assay, immunoprecipitations with HeLa S100 and nuclear extracts.
SRp20	CUCCGCUCCUCUUC	5	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	9710581	Lou H, Neugebauer KM, Gagel RF, Berget SM. (1998) Regulation of alternative polyadenylation by U1 snRNPs and SRp20. Mol Cell Biol. 18(9): 4977-85.		Construct of CALCA [796] INT4 and mutants for UV-crosslink and immunoprecipitation. Construct of CALCA EX4 - INT4 - EX5 - INT5 - EX6 fused to a heterologous first exon from adenovirus used for in vivo splicing.	In vivo splicing in T98G cells.	UV crosslink, competition, immunoprecipitation in HeLa cell nuclear extracts. EMSA with recombinant protein.
SRp20	CCUCGUCC	5	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	10022858	Schaal TD, Maniatis T. (1999) Selection and characterization of pre-mRNA splicing enhancers: identification of novel SR protein-specific enhancer sequences. Mol Cell Biol. 19(3): 1705-1719.		Constructs of Drosophila dsx [40940] EX3 - INT3 - EX4 mutated by inserting 18nt randomized in EX4.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa nuclear extracts. Winners are confirmed by in vitro splicing in HeLa S100 extracts.	SELEX winner confermed by immublotting in Hela nuclear extracts.
SRp20	GGAAGAAGAUAAAGAC	3	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	12826680	Galiana-Arnoux D, Lejeune F, Gesnel MC, Stevenin J, Breathnach R, Del Gatto-Konczak F. (2003) The CD44 alternative v9 exon contains a splicing enhancer responsive to the SR proteins 9G8, ASF/SF2, and SRp20. J Biol Chem. 278(35):32943-32953.		Construct of CD44 [960] EX8 - INT8 - EX9 - INT9 - EX10.	In vivo splicing in SVK14 and HEK293-EBNA cells.	UV crosslink, immunoprecipitation in HeLa S100 and nuclear extracts.
SRp20	UUCUUCUUCUUCUUCUUCUUCUUCUUCUUC	5	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	18597733	Baralle M, Pastor T, Bussani E, Pagani F. (2008) Influence of Friedreich ataxia GAA noncoding repeat expansions on pre-mRNA processing. Am J Hum Genet. 83(1): 77-88.		Synthesized sequences.		Mass spectrometry, immunoblot analysis.
SRp20	ACAACAAGAAGACGCGCAUCAU	5	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	11336712	Huang Y, Steitz JA. (2001) Splicing factors SRp20 and 9G8 promote the nucleocytoplasmic export of mRNA. Mol Cell. 7(4):899-905.		Sequences wt and mutated deriving from mouse Histone 2A		UV cross-linking and immunoprecipitation with HeLa NE
SRp20	CUGCACCACCACCUGGUUC	2	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	18945760	Jia R, Liu X, Tao M, Kruhlak M, Guo M, Meyers C, Baker CC, Zheng ZM. (2009) Control of the papillomavirus early-to-late switch by differentially expressed SRp20. J Virol. 83(1):167-180.		Sequences deriving from BPV-1 and HPV-16 mRNAs.		EMSA, immunoprecipitation with HEK293 NE, U20S NE and U20S total cell extract.
SRp20	CUGCACCACCACCUAUCUA	6	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	18945760	Jia R, Liu X, Tao M, Kruhlak M, Guo M, Meyers C, Baker CC, Zheng ZM. (2009) Control of the papillomavirus early-to-late switch by differentially expressed SRp20. J Virol. 83(1):167-180.		Sequences deriving from BPV-1 and HPV-16 mRNAs.		EMSA, immunoprecipitation with HEK293 NE, U20S NE and U20S total cell extract.
SRp20	CCAGACACCGGAAACCCCUGCCACACCAC	6	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	18945760	Jia R, Liu X, Tao M, Kruhlak M, Guo M, Meyers C, Baker CC, Zheng ZM. (2009) Control of the papillomavirus early-to-late switch by differentially expressed SRp20. J Virol. 83(1):167-180.		Sequences deriving from BPV-1 and HPV-16 mRNAs.		EMSA, immunoprecipitation with HEK293 NE, U20S NE and U20S total cell extract.
SRp20	GUUGGAGAAACGUACGGUAAGGAUAUAACCUCCCGGGGCAAAGACAAGCCGAUUGCC	-10	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	19602482	Goncalves V, Matos P, Jordan P. (2009) Antagonistic SR proteins regulate alternative splicing of tumor-related Rac1b downstream of the PI3-kinase and Wnt pathways. Hum Mol Genet. 18(19):3696-3707.		Sequences deriving from RAC1 [5879]. Construcs of RAC1 [5879] EX3 - INT3 - EX3b - INT3 - EX4.	In vivo splicing in HT29	EMSA with recombinant protein and EMSA supershift with DLD-1 NE
SRp20	GUUGGACAAAUGUACGGUAAGGAUAUAACCUCCCGGGGCAAAGACAAGCCGAUUGCC	-10	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	19602482	Goncalves V, Matos P, Jordan P. (2009) Antagonistic SR proteins regulate alternative splicing of tumor-related Rac1b downstream of the PI3-kinase and Wnt pathways. Hum Mol Genet. 18(19):3696-3707.		Sequences deriving from RAC1 [5879]. Construcs of RAC1 [5879] EX3 - INT3 - EX3b - INT3 - EX4.	In vivo splicing in HT29	EMSA with recombinant protein and EMSA supershift with DLD-1 NE
SRp20	GUUGGAGAAACGUACGGCAAGGAUAUAACCUCCCGGGGCAAAGACAAGCCGAUUGCC	-1	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	19602482	Goncalves V, Matos P, Jordan P. (2009) Antagonistic SR proteins regulate alternative splicing of tumor-related Rac1b downstream of the PI3-kinase and Wnt pathways. Hum Mol Genet. 18(19):3696-3707.		Sequences deriving from RAC1 [5879]. Construcs of RAC1 [5879] EX3 - INT3 - EX3b - INT3 - EX4.	In vivo splicing in HT29	EMSA with recombinant protein and EMSA supershift with DLD-1 NE
SRp20	CCUCUUCC	7	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	17036044	Hargous Y, Hautbergue GM, Tintaru AM, Skrisovska L, Golovanov AP, Stevenin J, Lian LY, Wilson SA, Allain FH. (2006) Molecular basis of RNA recognition and TAP binding by the SR proteins SRp20 and 9G8. EMBO J. 25(21):5126-5137.		Synthesized sequences		NMR spectroscopy
SRp20	CUUCAAC	7	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	17036044	Hargous Y, Hautbergue GM, Tintaru AM, Skrisovska L, Golovanov AP, Stevenin J, Lian LY, Wilson SA, Allain FH. (2006) Molecular basis of RNA recognition and TAP binding by the SR proteins SRp20 and 9G8. EMBO J. 25(21):5126-5137.		Synthesized sequences		NMR spectroscopy
SRp20	UCUUCAC	7	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	17036044	Hargous Y, Hautbergue GM, Tintaru AM, Skrisovska L, Golovanov AP, Stevenin J, Lian LY, Wilson SA, Allain FH. (2006) Molecular basis of RNA recognition and TAP binding by the SR proteins SRp20 and 9G8. EMBO J. 25(21):5126-5137.		Synthesized sequences		NMR spectroscopy
SRp20	CAUCAU	7	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	17036044	Hargous Y, Hautbergue GM, Tintaru AM, Skrisovska L, Golovanov AP, Stevenin J, Lian LY, Wilson SA, Allain FH. (2006) Molecular basis of RNA recognition and TAP binding by the SR proteins SRp20 and 9G8. EMBO J. 25(21):5126-5137.		Synthesized sequences		NMR spectroscopy
SRp20	CUUCAC	7	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	17036044	Hargous Y, Hautbergue GM, Tintaru AM, Skrisovska L, Golovanov AP, Stevenin J, Lian LY, Wilson SA, Allain FH. (2006) Molecular basis of RNA recognition and TAP binding by the SR proteins SRp20 and 9G8. EMBO J. 25(21):5126-5137.		Synthesized sequences		NMR spectroscopy
SRp20	UCAUC	5	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	17036044	Hargous Y, Hautbergue GM, Tintaru AM, Skrisovska L, Golovanov AP, Stevenin J, Lian LY, Wilson SA, Allain FH. (2006) Molecular basis of RNA recognition and TAP binding by the SR proteins SRp20 and 9G8. EMBO J. 25(21):5126-5137.		Synthesized sequences		NMR spectroscopy
SRp20	UUCAC	5	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	17036044	Hargous Y, Hautbergue GM, Tintaru AM, Skrisovska L, Golovanov AP, Stevenin J, Lian LY, Wilson SA, Allain FH. (2006) Molecular basis of RNA recognition and TAP binding by the SR proteins SRp20 and 9G8. EMBO J. 25(21):5126-5137.		Synthesized sequences		NMR spectroscopy
SRp20	CAUC	3	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	17036044	Hargous Y, Hautbergue GM, Tintaru AM, Skrisovska L, Golovanov AP, Stevenin J, Lian LY, Wilson SA, Allain FH. (2006) Molecular basis of RNA recognition and TAP binding by the SR proteins SRp20 and 9G8. EMBO J. 25(21):5126-5137.		Synthesized sequences		NMR spectroscopy
SRp20	GAUC	1	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	17036044	Hargous Y, Hautbergue GM, Tintaru AM, Skrisovska L, Golovanov AP, Stevenin J, Lian LY, Wilson SA, Allain FH. (2006) Molecular basis of RNA recognition and TAP binding by the SR proteins SRp20 and 9G8. EMBO J. 25(21):5126-5137.		Synthesized sequences		NMR spectroscopy
SRp20	UUCUUCAUCC	-5	Gene Name and Synonymous: SFRS3, splicing factor arginine/serine-rich 3. The shuttling protein SRp20 binds TAP and can function as export factors (18364396).	24321384	Jang HN, Lee M, Loh TJ, Choi SW, Oh HK, Moon H, Cho S, Hong SE, Kim do H, Sheng Z, Green MR, Park D, Zheng X, Shen H. (2014) Exon 9 skipping of apoptotic caspase-2 pre-mRNA is promoted by SRSF3 through interaction with exon 8. Biochim Biophys Acta. 1839(1):25-32.		Construct of CASP2 [835] EX8 - INT8 - EX9 - INT9 - EX10	In vivo splicing in MDA-MB-231 and HeLa	In vivo splicing with deletion and mutation analysis. RNA pulldown assay in HeLa nuclear extracts.
SRp30c	AAGAC	1	Gene Name and Synonymous: SFRS9, splicing factor arginine/serine-rich 9.	17548433	Paradis C, Cloutier P, Shkreta L, Toutant J, Klarskov K, Chabot B. (2007) hnRNP I/PTB can antagonize the splicing repressor activity of SRp30c. RNA 13: 1287-1300.		Synthesized oligos. Sequences of 20nt random for SELEX.	In vitro splicing with HeLa nuclear extracts, siRNA.	SELEX of 20nt random with recombinant protein. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts.
SRp30c	ACCAC	3	Gene Name and Synonymous: SFRS9, splicing factor arginine/serine-rich 9.	17548433	Paradis C, Cloutier P, Shkreta L, Toutant J, Klarskov K, Chabot B. (2007) hnRNP I/PTB can antagonize the splicing repressor activity of SRp30c. RNA 13: 1287-1300.		Synthesized oligos. Sequences of 20nt random for SELEX.	In vitro splicing with HeLa nuclear extracts, siRNA.	SELEX of 20nt random with recombinant protein. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts.
SRp30c	AGAAC	1	Gene Name and Synonymous: SFRS9, splicing factor arginine/serine-rich 9.	17548433	Paradis C, Cloutier P, Shkreta L, Toutant J, Klarskov K, Chabot B. (2007) hnRNP I/PTB can antagonize the splicing repressor activity of SRp30c. RNA 13: 1287-1300.		Synthesized oligos. Sequences of 20nt random for SELEX.	In vitro splicing with HeLa nuclear extracts, siRNA.	SELEX of 20nt random with recombinant protein. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts.
SRp30c	AGCAC	2	Gene Name and Synonymous: SFRS9, splicing factor arginine/serine-rich 9.	17548433	Paradis C, Cloutier P, Shkreta L, Toutant J, Klarskov K, Chabot B. (2007) hnRNP I/PTB can antagonize the splicing repressor activity of SRp30c. RNA 13: 1287-1300.		Synthesized oligos. Sequences of 20nt random for SELEX.	In vitro splicing with HeLa nuclear extracts, siRNA.	SELEX of 20nt random with recombinant protein. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts.
SRp30c	AGCAG	5	Gene Name and Synonymous: SFRS9, splicing factor arginine/serine-rich 9.	17548433	Paradis C, Cloutier P, Shkreta L, Toutant J, Klarskov K, Chabot B. (2007) hnRNP I/PTB can antagonize the splicing repressor activity of SRp30c. RNA 13: 1287-1300.		Synthesized oligos. Sequences of 20nt random for SELEX.	In vitro splicing with HeLa nuclear extracts, siRNA.	SELEX of 20nt random with recombinant protein. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts.
SRp30c	AGGAA	2	Gene Name and Synonymous: SFRS9, splicing factor arginine/serine-rich 9.	17548433	Paradis C, Cloutier P, Shkreta L, Toutant J, Klarskov K, Chabot B. (2007) hnRNP I/PTB can antagonize the splicing repressor activity of SRp30c. RNA 13: 1287-1300.		Synthesized oligos. Sequences of 20nt random for SELEX.	In vitro splicing with HeLa nuclear extracts, siRNA.	SELEX of 20nt random with recombinant protein. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts.
SRp30c	AGGAC	10	Gene Name and Synonymous: SFRS9, splicing factor arginine/serine-rich 9.	17548433	Paradis C, Cloutier P, Shkreta L, Toutant J, Klarskov K, Chabot B. (2007) hnRNP I/PTB can antagonize the splicing repressor activity of SRp30c. RNA 13: 1287-1300.		Synthesized oligos. Sequences of 20nt random for SELEX.	In vitro splicing with HeLa nuclear extracts, siRNA.	SELEX of 20nt random with recombinant protein. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts.
SRp30c	AGGAG	4	Gene Name and Synonymous: SFRS9, splicing factor arginine/serine-rich 9.	17548433	Paradis C, Cloutier P, Shkreta L, Toutant J, Klarskov K, Chabot B. (2007) hnRNP I/PTB can antagonize the splicing repressor activity of SRp30c. RNA 13: 1287-1300.		Synthesized oligos. Sequences of 20nt random for SELEX.	In vitro splicing with HeLa nuclear extracts, siRNA.	SELEX of 20nt random with recombinant protein. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts.
SRp30c	AGGAU	1	Gene Name and Synonymous: SFRS9, splicing factor arginine/serine-rich 9.	17548433	Paradis C, Cloutier P, Shkreta L, Toutant J, Klarskov K, Chabot B. (2007) hnRNP I/PTB can antagonize the splicing repressor activity of SRp30c. RNA 13: 1287-1300.		Synthesized oligos. Sequences of 20nt random for SELEX.	In vitro splicing with HeLa nuclear extracts, siRNA.	SELEX of 20nt random with recombinant protein. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts.
SRp30c	AGGCA	3	Gene Name and Synonymous: SFRS9, splicing factor arginine/serine-rich 9.	17548433	Paradis C, Cloutier P, Shkreta L, Toutant J, Klarskov K, Chabot B. (2007) hnRNP I/PTB can antagonize the splicing repressor activity of SRp30c. RNA 13: 1287-1300.		Synthesized oligos. Sequences of 20nt random for SELEX.	In vitro splicing with HeLa nuclear extracts, siRNA.	SELEX of 20nt random with recombinant protein. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts.
SRp30c	CGGAC	1	Gene Name and Synonymous: SFRS9, splicing factor arginine/serine-rich 9.	17548433	Paradis C, Cloutier P, Shkreta L, Toutant J, Klarskov K, Chabot B. (2007) hnRNP I/PTB can antagonize the splicing repressor activity of SRp30c. RNA 13: 1287-1300.		Synthesized oligos. Sequences of 20nt random for SELEX.	In vitro splicing with HeLa nuclear extracts, siRNA.	SELEX of 20nt random with recombinant protein. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts.
SRp30c	CGGAG	1	Gene Name and Synonymous: SFRS9, splicing factor arginine/serine-rich 9.	17548433	Paradis C, Cloutier P, Shkreta L, Toutant J, Klarskov K, Chabot B. (2007) hnRNP I/PTB can antagonize the splicing repressor activity of SRp30c. RNA 13: 1287-1300.		Synthesized oligos. Sequences of 20nt random for SELEX.	In vitro splicing with HeLa nuclear extracts, siRNA.	SELEX of 20nt random with recombinant protein. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts.
SRp30c	CGGUG	1	Gene Name and Synonymous: SFRS9, splicing factor arginine/serine-rich 9.	17548433	Paradis C, Cloutier P, Shkreta L, Toutant J, Klarskov K, Chabot B. (2007) hnRNP I/PTB can antagonize the splicing repressor activity of SRp30c. RNA 13: 1287-1300.		Synthesized oligos. Sequences of 20nt random for SELEX.	In vitro splicing with HeLa nuclear extracts, siRNA.	SELEX of 20nt random with recombinant protein. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts.
SRp30c	UGGAC	2	Gene Name and Synonymous: SFRS9, splicing factor arginine/serine-rich 9.	17548433	Paradis C, Cloutier P, Shkreta L, Toutant J, Klarskov K, Chabot B. (2007) hnRNP I/PTB can antagonize the splicing repressor activity of SRp30c. RNA 13: 1287-1300.		Synthesized oligos. Sequences of 20nt random for SELEX.	In vitro splicing with HeLa nuclear extracts, siRNA.	SELEX of 20nt random with recombinant protein. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts.
SRp30c	UGGAU	2	Gene Name and Synonymous: SFRS9, splicing factor arginine/serine-rich 9.	17548433	Paradis C, Cloutier P, Shkreta L, Toutant J, Klarskov K, Chabot B. (2007) hnRNP I/PTB can antagonize the splicing repressor activity of SRp30c. RNA 13: 1287-1300.		Synthesized oligos. Sequences of 20nt random for SELEX.	In vitro splicing with HeLa nuclear extracts, siRNA.	SELEX of 20nt random with recombinant protein. EMSA, UV crosslink, SDS-PAGE with HeLa nuclear extracts.
SRp30c	CUGGAUU	-5	Gene Name and Synonymous: SFRS9, splicing factor arginine/serine-rich 9.	12024014	Simard MJ, Chabot B. (2002) SRp30c is a repressor of 3' splice site utilization. Mol Cell Biol. 22(12): 4001-4010.	In this context, SRp30c has splicing repressor activity.	Construct of Adenovirus Major late EX_L1 - INT - EX_L2 with 3 copies of wt ISE or mutants inserted into the intron.	In vitro splicing with HeLa nuclear extract.	RNA affinity chromatography, mutation analysis and EMSA with HeLa nuclear extract.
SRp30c	GAAGAAGAAGAAGAAGAAGAAGAAGAAGAA	5	Gene Name and Synonymous: SFRS9, splicing factor arginine/serine-rich 9.	18597733	Baralle M, Pastor T, Bussani E, Pagani F. (2008) Influence of Friedreich ataxia GAA noncoding repeat expansions on pre-mRNA processing. Am J Hum Genet. 83(1): 77-88.		Synthesized sequences.		Mass spectrometry, immunoblot analysis.
SRp30c	UGAGUCGGAUCGCAGCUUGGAUGGCCAC	5	Gene Name and Synonymous: SFRS9, splicing factor arginine/serine-rich 9.	18534987	Cloutier P, Toutant J, Shkreta L, Goekjian S, Revil T, Chabot B. (2008) Antagonistic effects of the SRp30c protein and cryptic 5' splice sites on the alternative splicing of the apoptotic regulator Bcl-x. J Biol Chem. 283(31):21315-21324.		Construct of BCL2L1 [600039] EX1-EX2-INT2-EX3	In vitro splicing assays in HeLa nuclear extracts and recombinant protein	EMSA using recombinant protein. UV cross-linking in HeLa and immunoprecipitation.
SRp30c	AGAUGGGCAAGGAGGUGGA	5	Gene Name and Synonymous: SFRS9, splicing factor arginine/serine-rich 9.	16249178	Park E, Han J, Son GH, Lee MS, Chung S, Park SH, Park K, Lee KH, Choi S, Seong JY, Kim K. (2006) Cooperative actions of Tra2alpha with 9G8 and SRp30c in the RNA splicing of the gonadotropin-releasing hormone gene transcript. J Biol Chem. 281(1):401-409.		Sequences deriving from mouse Gnrh1 [14714]. Construct of Gnrh1 [14714] EX1 - INT1 - EX2 - EX3 - EX4.	In vitro splicing in HeLa NE	EMSA, UV cross-linking with recombinant protein
SRp30c	GAAAGUCUGAUUGAAGAGGAAGCCAGGCAGAAGAAGA	5	Gene Name and Synonymous: SFRS9, splicing factor arginine/serine-rich 9.	16249178	Park E, Han J, Son GH, Lee MS, Chung S, Park SH, Park K, Lee KH, Choi S, Seong JY, Kim K. (2006) Cooperative actions of Tra2alpha with 9G8 and SRp30c in the RNA splicing of the gonadotropin-releasing hormone gene transcript. J Biol Chem. 281(1):401-409.		Sequences deriving from mouse Gnrh1 [14714]. Construct of Gnrh1 [14714] EX1 - INT1 - EX2 - EX3 - EX4.	In vitro splicing in HeLa NE	EMSA, UV cross-linking with recombinant protein
SRp30c	CCAGACACCGGAAACCCCUGCCACACCAC	4	Gene Name and Synonymous: SFRS9, splicing factor arginine/serine-rich 9.	18945760	Jia R, Liu X, Tao M, Kruhlak M, Guo M, Meyers C, Baker CC, Zheng ZM. (2009) Control of the papillomavirus early-to-late switch by differentially expressed SRp20. J Virol. 83(1):167-180.		Sequences deriving from BPV-1 and HPV-16 mRNAs.		EMSA, immunoprecipitation with HEK293 NE, U20S NE and U20S total cell extract.
SRp30c	GACGACGAGGAGCAGCAG	8	Gene Name and Synonymous: SFRS9, splicing factor arginine/serine-rich 9.	11454855	Tian H, Kole R. (2001) Strong RNA splicing enhancers identified by a modified method of cycled selection interact with SR protein. J Biol Chem. 276(36):33833-33839.		Synthesized sequences and sequences deriving from S. cerevisiae URA3 [856692]. Constructs of URA3 [856692] EX1 - INT1 - EX2 - INT2 - EX3 (sequence inserted in EX2).	In vitro splicing with HeLa NE	Filter binding assay, UV cross-linking and immunoprecipitation with HeLa NE
SRp30c	GACGACUCAGCAG	4	Gene Name and Synonymous: SFRS9, splicing factor arginine/serine-rich 9.	11454855	Tian H, Kole R. (2001) Strong RNA splicing enhancers identified by a modified method of cycled selection interact with SR protein. J Biol Chem. 276(36):33833-33839.		Synthesized sequences and sequences deriving from S. cerevisiae URA3 [856692]. Constructs of URA3 [856692] EX1 - INT1 - EX2 - INT2 - EX3 (sequence inserted in EX2).	In vitro splicing with HeLa NE	Filter binding assay, UV cross-linking and immunoprecipitation with HeLa NE
SRp30c	GGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCC	2	Gene Name and Synonymous: SFRS9, splicing factor arginine/serine-rich 9.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
SRp30c	AAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACC	2	Gene Name and Synonymous: SFRS9, splicing factor arginine/serine-rich 9.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
SRp38	GACAAA	4	Gene Name and Synonymous: FUSIP1, FUS interacting protein (serine/arginine-rich) 1, NSSR, TASR, SRp38, TASR1, TASR2, FUSIP2, SFRS13, SRrp40. Dephosphorylation converts SRp38 to a splicing repressor (PMID: 12419250) SRp38 is an atypical SR protein that functions as a general splicing repressor when dephosphorylated, but when phosphorylated it functions as a sequence-specific splicing activator (PMID: 18794844).	18794844	Feng Y, Chen M, Manley JL. (2008) Phosphorylation switches the general splicing repressor SRp38 to a sequence-specific activator. Nat Struct Mol Biol. 15(10):1040-1048.		Constructs of beta-globin [3043].	In vitro splicing with HeLa S100 extracts. Splicing-inhibition and spliceosome-assembly assays.	EMSA and RNase protection assay with recombinant protein.
SRp38	AGACAA	7	Gene Name and Synonymous: FUSIP1, FUS interacting protein (serine/arginine-rich) 1, NSSR, TASR, SRp38, TASR1, TASR2, FUSIP2, SFRS13, SRrp40. Dephosphorylation converts SRp38 to a splicing repressor (PMID: 12419250) SRp38 is an atypical SR protein that functions as a general splicing repressor when dephosphorylated, but when phosphorylated it functions as a sequence-specific splicing activator (PMID: 18794844).	18794844	Feng Y, Chen M, Manley JL. (2008) Phosphorylation switches the general splicing repressor SRp38 to a sequence-specific activator. Nat Struct Mol Biol. 15(10):1040-1048.		Constructs of beta-globin [3043].	In vitro splicing with HeLa S100 extracts. Splicing-inhibition and spliceosome-assembly assays.	EMSA and RNase protection assay with recombinant protein.
SRp38	AAAGACAAA	7	Gene Name and Synonymous: FUSIP1, FUS interacting protein (serine/arginine-rich) 1, NSSR, TASR, SRp38, TASR1, TASR2, FUSIP2, SFRS13, SRrp40. Dephosphorylation converts SRp38 to a splicing repressor (PMID: 12419250) SRp38 is an atypical SR protein that functions as a general splicing repressor when dephosphorylated, but when phosphorylated it functions as a sequence-specific splicing activator (PMID: 18794844).	18794844	Feng Y, Chen M, Manley JL. (2008) Phosphorylation switches the general splicing repressor SRp38 to a sequence-specific activator. Nat Struct Mol Biol. 15(10):1040-1048.		Constructs of beta-globin [3043].	In vitro splicing with HeLa S100 extracts. Splicing-inhibition and spliceosome-assembly assays.	EMSA and RNase protection assay with recombinant protein.
SRp38	ACAAAGACAAA	5	Gene Name and Synonymous: FUSIP1, FUS interacting protein (serine/arginine-rich) 1, NSSR, TASR, SRp38, TASR1, TASR2, FUSIP2, SFRS13, SRrp40. Dephosphorylation converts SRp38 to a splicing repressor (PMID: 12419250) SRp38 is an atypical SR protein that functions as a general splicing repressor when dephosphorylated, but when phosphorylated it functions as a sequence-specific splicing activator (PMID: 18794844).	12419250	Shin C, Manley JL. (2002) The SR protein SRp38 represses splicing in M phase cells. Cell. 111(3):407-417.		Sequences of 20 nt random for SELEX.		SELEX of random 20nt with recombinant protein with mitotic phase HeLa extracts, Western Blot.
SRp38	AAAGAAA	5	Gene Name and Synonymous: FUSIP1, FUS interacting protein (serine/arginine-rich) 1, NSSR, TASR, SRp38, TASR1, TASR2, FUSIP2, SFRS13, SRrp40. Dephosphorylation converts SRp38 to a splicing repressor (PMID: 12419250) SRp38 is an atypical SR protein that functions as a general splicing repressor when dephosphorylated, but when phosphorylated it functions as a sequence-specific splicing activator (PMID: 18794844).	19561594	Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol. 27(7):667-670.		Synthesized sequences		RNAcompete using recombinant protein
SRp38	GAAAGAA	5	Gene Name and Synonymous: FUSIP1, FUS interacting protein (serine/arginine-rich) 1, NSSR, TASR, SRp38, TASR1, TASR2, FUSIP2, SFRS13, SRrp40. Dephosphorylation converts SRp38 to a splicing repressor (PMID: 12419250) SRp38 is an atypical SR protein that functions as a general splicing repressor when dephosphorylated, but when phosphorylated it functions as a sequence-specific splicing activator (PMID: 18794844).	19561594	Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol. 27(7):667-670.		Synthesized sequences		RNAcompete using recombinant protein
SRp38	AAAGAAG	5	Gene Name and Synonymous: FUSIP1, FUS interacting protein (serine/arginine-rich) 1, NSSR, TASR, SRp38, TASR1, TASR2, FUSIP2, SFRS13, SRrp40. Dephosphorylation converts SRp38 to a splicing repressor (PMID: 12419250) SRp38 is an atypical SR protein that functions as a general splicing repressor when dephosphorylated, but when phosphorylated it functions as a sequence-specific splicing activator (PMID: 18794844).	19561594	Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol. 27(7):667-670.		Synthesized sequences		RNAcompete using recombinant protein
SRp38	AAAAGAA	5	Gene Name and Synonymous: FUSIP1, FUS interacting protein (serine/arginine-rich) 1, NSSR, TASR, SRp38, TASR1, TASR2, FUSIP2, SFRS13, SRrp40. Dephosphorylation converts SRp38 to a splicing repressor (PMID: 12419250) SRp38 is an atypical SR protein that functions as a general splicing repressor when dephosphorylated, but when phosphorylated it functions as a sequence-specific splicing activator (PMID: 18794844).	19561594	Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol. 27(7):667-670.		Synthesized sequences		RNAcompete using recombinant protein
SRp38	AGAGAAA	5	Gene Name and Synonymous: FUSIP1, FUS interacting protein (serine/arginine-rich) 1, NSSR, TASR, SRp38, TASR1, TASR2, FUSIP2, SFRS13, SRrp40. Dephosphorylation converts SRp38 to a splicing repressor (PMID: 12419250) SRp38 is an atypical SR protein that functions as a general splicing repressor when dephosphorylated, but when phosphorylated it functions as a sequence-specific splicing activator (PMID: 18794844).	19561594	Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol. 27(7):667-670.		Synthesized sequences		RNAcompete using recombinant protein
SRp40	AAAGG	5	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	ACACC	5	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	ACACG	5	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	ACAGC	5	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	ACAGG	5	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	ACCGC	5	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	ACGGC	5	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	ACGGG	5	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	ACUGC	5	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	ACUGG	5	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	AGAGG	5	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	GCAGC	5	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	GCAGG	5	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	GCUGC	5	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	UCCGC	5	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	UCGGG	5	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	UCUGG	5	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	CCGGAGGGGUCGGCUCGU	2	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9037021	Tacke R, Chen Y, Manley JL. (1997) Sequence-specific RNA binding by an SR protein requires RS domain phosphorylation: creation of an SRp40-specific splicing enhancer. Proc Natl Acad Sci U S A. 94(4): 1148-1153.		Construct of NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa cell nuclear extracts.	SELEX of 20nt random with recombinant protein, confirmed by UV crosslink, EMSA, immunoblot in HeLa nuclear extracts.
SRp40	UAGGAGGCUGGAUCGU	2	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9037021	Tacke R, Chen Y, Manley JL. (1997) Sequence-specific RNA binding by an SR protein requires RS domain phosphorylation: creation of an SRp40-specific splicing enhancer. Proc Natl Acad Sci U S A. 94(4): 1148-1153.		Construct of NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa cell nuclear extracts.	SELEX of 20nt random with recombinant protein, confirmed by UV crosslink, EMSA, immunoblot in HeLa nuclear extracts.
SRp40	UGAGAAGAUAGCACCA	2	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9037021	Tacke R, Chen Y, Manley JL. (1997) Sequence-specific RNA binding by an SR protein requires RS domain phosphorylation: creation of an SRp40-specific splicing enhancer. Proc Natl Acad Sci U S A. 94(4): 1148-1153.		Construct of NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa cell nuclear extracts.	SELEX of 20nt random with recombinant protein, confirmed by UV crosslink, EMSA, immunoblot in HeLa nuclear extracts.
SRp40	UGGGAGCAGUCGGCUCGA	2	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9037021	Tacke R, Chen Y, Manley JL. (1997) Sequence-specific RNA binding by an SR protein requires RS domain phosphorylation: creation of an SRp40-specific splicing enhancer. Proc Natl Acad Sci U S A. 94(4): 1148-1153.		Construct of NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa cell nuclear extracts.	SELEX of 20nt random with recombinant protein, confirmed by UV crosslink, EMSA, immunoblot in HeLa nuclear extracts.
SRp40	UGGGAGCUGAGCUCGC	2	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9037021	Tacke R, Chen Y, Manley JL. (1997) Sequence-specific RNA binding by an SR protein requires RS domain phosphorylation: creation of an SRp40-specific splicing enhancer. Proc Natl Acad Sci U S A. 94(4): 1148-1153.		Construct of NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa cell nuclear extracts.	SELEX of 20nt random with recombinant protein, confirmed by UV crosslink, EMSA, immunoblot in HeLa nuclear extracts.
SRp40	UUGGAGUAACAAGGAGUA	2	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9037021	Tacke R, Chen Y, Manley JL. (1997) Sequence-specific RNA binding by an SR protein requires RS domain phosphorylation: creation of an SRp40-specific splicing enhancer. Proc Natl Acad Sci U S A. 94(4): 1148-1153.		Construct of NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa cell nuclear extracts.	SELEX of 20nt random with recombinant protein, confirmed by UV crosslink, EMSA, immunoblot in HeLa nuclear extracts.
SRp40	UGGGAGCAGUCGGCUCAU	3	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9037021	Tacke R, Chen Y, Manley JL. (1997) Sequence-specific RNA binding by an SR protein requires RS domain phosphorylation: creation of an SRp40-specific splicing enhancer. Proc Natl Acad Sci U S A. 94(4): 1148-1153.		Construct of NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa cell nuclear extracts.	SELEX of 20nt random with recombinant protein, confirmed by UV crosslink, EMSA, immunoblot in HeLa nuclear extracts.
SRp40	CCGGAGGGGUUAGUUCCC	5	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9037021	Tacke R, Chen Y, Manley JL. (1997) Sequence-specific RNA binding by an SR protein requires RS domain phosphorylation: creation of an SRp40-specific splicing enhancer. Proc Natl Acad Sci U S A. 94(4): 1148-1153.		Construct of NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa cell nuclear extracts.	SELEX of 20nt random with recombinant protein, confirmed by UV crosslink, EMSA, immunoblot in HeLa nuclear extracts.
SRp40	UGGGAGCAAAGCUCGC	8	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9037021	Tacke R, Chen Y, Manley JL. (1997) Sequence-specific RNA binding by an SR protein requires RS domain phosphorylation: creation of an SRp40-specific splicing enhancer. Proc Natl Acad Sci U S A. 94(4): 1148-1153.		Construct of NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa cell nuclear extracts.	SELEX of 20nt random with recombinant protein, confirmed by UV crosslink, EMSA, immunoblot in HeLa nuclear extracts.
SRp40	UGGGAGCAGUCGGCUCGU	10	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9037021	Tacke R, Chen Y, Manley JL. (1997) Sequence-specific RNA binding by an SR protein requires RS domain phosphorylation: creation of an SRp40-specific splicing enhancer. Proc Natl Acad Sci U S A. 94(4): 1148-1153.		Construct of NCAM1 [4684] EX18, downstream 5' splice site, alpha globin HBA2 [3040] INT2, HBA2 EX3. Sequences of 20 nt random for SELEX.	In vitro splicing in HeLa cell nuclear extracts.	SELEX of 20nt random with recombinant protein, confirmed by UV crosslink, EMSA, immunoblot in HeLa nuclear extracts.
SRp40	GAGGAAGAA	5	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	7651409	Ramchatesingh J, Zahler AM, Neugebauer KM, Roth MB, Cooper TA. (1995) A subset of SR proteins activates splicing of the cardiac troponin T alternative exon by direct interactions with an exonic enhancer. Mol Cell Biol. 15(9):4898-4907.		Construct of cardiac troponin T TNNT2 [7139] EX4 - INT4 - EX5	In vitro splicing in HeLa nuclear extracts.	UV crosslink, competition assay, immunoprecipitation
SRp40	GAAGAAGA	5	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	14729981	Buratti E, Muro AF, Giombi M, Gherbassi D, Iaconcig A, Baralle FE. (2004) RNA folding affects the recruitment of SR proteins by mouse and human polypurinic enhancer elements in the fibronectin EDA exon. Mol Cell Biol. 24(3):1387-1400.		Sequences of fibronectin FN1 [2335] EX_EDA and mutants		UV crosslink, competition assay, immunoprecipitation with HeLa nuclear extracts
SRp40	AACACGGCUGUGAGUGGUCC	8	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	ACAUGAACACAACGUCGGGG	8	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	ACCAGGGUCGUCCGUCUGGG	8	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	ACGCUCAAUAGAAAUCAAG	8	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	ACGGGCGGACUCCUCUGGUA	8	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	AGACCAGUAGCCGCUGCCGG	8	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	AUGGGUCUGACACGCUGACU	8	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	CAGGGCACUUGUUUCACUGG	8	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	CCAAUCGGAUCACCUAACGGC	8	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	CCUCACUGGACUCAGUGGUG	8	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	CGACGUGUGGGGACGGCAAG	8	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	CGAGGAAUAUAAAGGUGGGA	8	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	CUUGAGGUGAAGGUCAUGUG	8	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	GAAAGUUGUAAAGACAGGGG	8	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	GAACCUUGCAGGUCGCGCGA	8	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	GACGUUGGUGUUAUCCGCCA	8	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	GCAGUGACUGCAUUGGCAGC	8	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	GGCGUUUUCGAGGAUCGGGA	8	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	GGUAAGUACUACAGGGUGUG	8	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	GUAGGACUGGAUCGCGUUGG	8	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	GUAUUUCGACACCAGUGUGA	8	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	GUGAUACAUACAGGUGGCGC	8	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	UAGUAACCGCGACAGUAGGC	8	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	UCUAAGGCGCUAAGAACGGC	8	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	UGCAGAGGAUAGCCGGAACG	8	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	UGCUCACCCGGCCGCCACAGC	8	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	UGGAUGUCAGCGACGGGCCA	8	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	UGUGCAGCUUGCGUCACGUC	8	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	UUACAACUGCACCACGGUCG	8	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp40	GAAGAAGAAGAAGAAGAAGAAGAAGAAGAA	5	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	18597733	Baralle M, Pastor T, Bussani E, Pagani F. (2008) Influence of Friedreich ataxia GAA noncoding repeat expansions on pre-mRNA processing. Am J Hum Genet. 83(1): 77-88.		Synthesized sequences.		Mass spectrometry, immunoblot analysis.
SRp40	GGAAGAAGAUAAAGAC	3	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	12826680	Galiana-Arnoux D, Lejeune F, Gesnel MC, Stevenin J, Breathnach R, Del Gatto-Konczak F. (2003) The CD44 alternative v9 exon contains a splicing enhancer responsive to the SR proteins 9G8, ASF/SF2, and SRp20. J Biol Chem. 278(35):32943-32953.		Construct of CD44 [960] EX8 - INT8 - EX9 - INT9 - EX10.	In vivo splicing in SVK14 and HEK293-EBNA cells.	UV crosslink, immunoprecipitation in HeLa S100 and nuclear extracts.
SRp40	AUAAAGG	-5	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	19843576	Chandradas S, Deikus G, Tardos JG, Bogdanov VY. (2010) Antagonistic roles of four SR proteins in the biosynthesis of alternatively spliced tissue factor transcripts in monocytic cells. J Leukoc Biol. 87(1):147-152.	In this context, SRp40 and SC35 antagonize other SR proteins by competing for certain sites in exon 5, thereby promoting TF (tissue factor) exon 5 exclusion.	Construct of F3 [2152] EX4-INT4-EX5-INT5-EX6 and mutants	In vivo splicing in THP-1 cells.	Mutagenesis, splicing assays, EMSA, Immunoblot.
SRp40	CUGAUUUGUACCUAUUAGAUUC	2	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
SRp40	UACUGAAGAACAAGUAUUU	5	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
SRp40	GGGAGGAAGAAAUAGAAGAUGCAGAAGAGG	5	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	16000324	Venables JP, Bourgeois CF, Dalgliesh C, Kister L, Stevenin J, Elliott DJ. (2005) Up-regulation of the ubiquitous alternative splicing factor Tra2beta causes inclusion of a germ cell-specific exon. Hum Mol Genet. 14(16):2289-22303.		Constructs of wt or mutated HBB [3043]_EX2 - HIPK3 [10114]_INT3 - HIPK3 [10114]_EX3bis - HIPK3 [10114]_INT3 - HBB [3043]_ EX3. Sequences deriving from HIPK3 [10114].	In vivo splicing in HEK293 cells.	Pulldown assay and western blot with HeLa NE
SRp40	GGAGAGAAAGAAGGGAAGAUGAGAGG	5	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	16254078	Mercado PA, Ayala YM, Romano M, Buratti E, Baralle FE. (2005) Depletion of TDP 43 overrides the need for exonic and intronic splicing enhancers in the human apoA-II gene. Nucleic Acids Res. 33(18):6000-6010.		Construct of heterologous exons of alpha-globin, fibronectin and APOA2 [336] INT2 - EX3 - INT3	In vivo splicing in Hep3B	Pull-down assay in HeLa NE, western blot. UV cross-linking, immunoprecipitation in HeLa NE, siRNA.
SRp40	GGUAUUUUUGGAGAAAUUC	-8	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	17576688	Buratti E, Stuani C, De Prato G, Baralle FE. (2007) SR protein-mediated inhibition of CFTR exon 9 inclusion: molecular characterization of the intronic splicing silencer. Nucleic Acids Res. 35(13):4359-4368.		Sequences deriving from CFTR [1080]. Constructs of CFTR [1080] INT8 - EX9 - INT9.	In vivo splicing in Hep3B	UV cross-linking, immunoprecipitation with HeLa NE
SRp40	UGUAUAAUAGAAAUUGUUC	-5	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	17576688	Buratti E, Stuani C, De Prato G, Baralle FE. (2007) SR protein-mediated inhibition of CFTR exon 9 inclusion: molecular characterization of the intronic splicing silencer. Nucleic Acids Res. 35(13):4359-4368.		Sequences deriving from CFTR [1080]. Constructs of CFTR [1080] INT8 - EX9 - INT9.	In vivo splicing in Hep3B	UV cross-linking, immunoprecipitation with HeLa NE
SRp40	GGCAGGAAGAAGAGGAGCA	8	Gene Name and Synonymous: SFRS5, splicing factor arginine/serine-rich 5, HRS.	18945760	Jia R, Liu X, Tao M, Kruhlak M, Guo M, Meyers C, Baker CC, Zheng ZM. (2009) Control of the papillomavirus early-to-late switch by differentially expressed SRp20. J Virol. 83(1):167-180.		Sequences deriving from BPV-1 and HPV-16 mRNAs.		EMSA, immunoprecipitation with HEK293 NE, U20S NE and U20S total cell extract.
SRp54	AAGAAG	-5	Gene Name and Synonymous: SFRS11, splicing factor, arginine/serine-rich 11, p54.	16943417	Wu JY, Kar A, Kuo D, Yu B, Havlioglu N. (2006) SRp54 (SFRS11), a regulator for tau exon 10 alternative splicing identified by an expression cloning strategy. Mol Cell Biol. 26(18):6739-6747.		Construct of Tau MAPT [4137] EX9 - INT9 - EX10 - INT10 - EX11 with GFP cDNA inserted into EX11.	In vivo splicing in HEK293.	Positive clones identified by fluorescence-activated cell sorting and visual inspection. Confirmed by UV crosslink, immunoprecipitation, SDS-PAGE.
SRp55	ACCGGG	5	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	ACCGUC	5	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	AGCGGA	5	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	AUCGUA	5	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	CACGGA	5	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	CCCGGC	5	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	CGCGUC	5	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	GACGUC	5	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	GCCGGA	5	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	GCCGUC	5	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	UACGUC	5	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	UCCGGA	5	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	UGCGGC	5	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	UGCGUA	5	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	UGCGUC	5	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	UGCGUG	5	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	GAGGAAGAA	5	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	7651409	Ramchatesingh J, Zahler AM, Neugebauer KM, Roth MB, Cooper TA. (1995) A subset of SR proteins activates splicing of the cardiac troponin T alternative exon by direct interactions with an exonic enhancer. Mol Cell Biol. 15(9):4898-4907.		Construct of cardiac troponin T TNNT2 [7139] EX4 - INT4 - EX5	In vitro splicing in HeLa nuclear extracts.	UV crosslink, competition assay, immunoprecipitation
SRp55	AAGAGGAAGAAUGGCUUGAGGAAGACGACG	5	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9436904	Nagel RJ, Lancaster AM, Zahler AM. (1998) Specific binding of an exonic splicing enhancer by the pre-mRNA splicing factor SRp55. RNA. 4(1):11-23.		Sequences of Gallus gallus cardiac troponin T TNNT2 [396433] EX5 and mutants for EMSA. Construct of beta-globin [3043] EX1 - INT1 - EX2 for in vitro splicing.	In vitro splicing with HeLa S100 extracts, also in competition with EX5 and mutants of TNNT2.	EMSA with purified protein. Hill plot analysis. Chemical modification interference with kethoxal.
SRp55	GCAGCACCUGGC	5	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	12549914	Tran Q, Roesser JR. (2003) SRp55 is a regulator of calcitonin/CGRP alternative RNA splicing. Biochemistry. 42(4):951-957.		Construct of calcitonin/calcitonin gene-related peptide CALCA [796] EX3 - INT3 - EX4 - INT4 - EX5.	In vitro splicing with HeLa and HEK 293 cells nuclear extracts.	EMSA, UV crosslink.
SRp55	GAAGAAGA	5	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	14729981	Buratti E, Muro AF, Giombi M, Gherbassi D, Iaconcig A, Baralle FE. (2004) RNA folding affects the recruitment of SR proteins by mouse and human polypurinic enhancer elements in the fibronectin EDA exon. Mol Cell Biol. 24(3):1387-1400.		Sequences of fibronectin FN1 [2335] EX_EDA and mutants		UV crosslink, competition assay, immunoprecipitation with HeLa nuclear extracts
SRp55	AGACCGUCAACAUGUCUGCC	8	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	AUAGCGAGCGGAAAACAGGUAA	8	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	AUGCAGACGAUGGUGCGGCU	8	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	CAAACCGUCAAAGUACGUCA	8	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	CAAACCUGCGUGGUAUGGUA	8	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	CACCAGCGGAGUCCCCAGAGC	8	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	CAUGAAGCCGUCACCAACGUCUAG	8	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	CGAGCCACGGACCACACGGA	8	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	CGAUUCAGGUACGUCCAACU	8	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	CGCACACUGCGUCCCGGGGC	8	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	CGCGUCGUGUCGUAGGGGGC	8	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	CGCGUGCGUGCAGUGCCAAG	8	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	CGUGUCGCGUCCUCGUGUGC	8	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	GACCGGGAUUGAAGGAGCU	8	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	GACGUCGCCCCGUGUGUAAG	8	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	GAGUUGAGCGAUGGUGCGUA	8	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	GAUCGAAUCCGGAACACAGG	8	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	GAUCGUAUCCGGAACACGGG	8	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	GGAUAACGGUGUGGCCCGGC	8	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	GGAUCGAAUCCGGAACACGG	8	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	GGAUCGUAAGUGCAGACGA	8	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	GGAUCGUAAGUGCAGAUGA	8	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	GGCCGGACGCAUUGCAGAG	8	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	UCCGAUCUGUGCACGGACG	8	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9649504	Liu HX, Zhang M, Krainer AR. (1998) Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins. Genes Dev. 12(13): 1998-2012.		Construct of EX_M1 - INT1 - EX_M2 murine IgM and its variants obtained by replacing the natural ESE in the M2 exon with 20nt random.	SELEX imposing a selection of the constructs for splicing rather than for binding. Selection of the constructs by splicing in HeLa S100 extracts complemented by recombinant SR protein. Winners are confirmed by in vitro splicing in HeLa nuclear extracts.	UV crosslink, competition and immunoprecipitation assays in HeLa nuclear extracts.
SRp55	GAAGAAGAAGAAGAAGAAGAAGAAGAAGAA	5	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	18597733	Baralle M, Pastor T, Bussani E, Pagani F. (2008) Influence of Friedreich ataxia GAA noncoding repeat expansions on pre-mRNA processing. Am J Hum Genet. 83(1): 77-88.		Synthesized sequences.		Mass spectrometry, immunoblot analysis.
SRp55	AAGGGAGGGAAUGGCUUGAGGAAGACGACG	2	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9436904	Nagel RJ, Lancaster AM, Zahler AM. (1998) Specific binding of an exonic splicing enhancer by the pre-mRNA splicing factor SRp55. RNA. 4(1):11-23.		Sequences of Gallus gallus cardiac troponin T TNNT2 [396433] EX5 and mutants for EMSA. Construct of beta-globin [3043] EX1 - INT1 - EX2 for in vitro splicing.	In vitro splicing with HeLa S100 extracts, also in competition with EX5 and mutants of TNNT2.	EMSA with purified protein. Hill plot analysis. Chemical modification interference with kethoxal.
SRp55	AAGAGGAAGAAGAAGAAGAGGAAGACGACG	8	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	9436904	Nagel RJ, Lancaster AM, Zahler AM. (1998) Specific binding of an exonic splicing enhancer by the pre-mRNA splicing factor SRp55. RNA. 4(1):11-23.		Sequences of Gallus gallus cardiac troponin T TNNT2 [396433] EX5 and mutants for EMSA. Construct of beta-globin [3043] EX1 - INT1 - EX2 for in vitro splicing.	In vitro splicing with HeLa S100 extracts, also in competition with EX5 and mutants of TNNT2.	EMSA with purified protein. Hill plot analysis. Chemical modification interference with kethoxal.
SRp55	GAUCAACCUGGC	5	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	12549914	Tran Q, Roesser JR. (2003) SRp55 is a regulator of calcitonin/CGRP alternative RNA splicing. Biochemistry. 42(4):951-957.		Construct of calcitonin/calcitonin gene-related peptide CALCA [796] EX3 - INT3 - EX4 - INT4 - EX5.	In vitro splicing with HeLa and HEK 293 cells nuclear extracts.	EMSA, UV crosslink.
SRp55	GCUCAUCCUGGC	5	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	12549914	Tran Q, Roesser JR. (2003) SRp55 is a regulator of calcitonin/CGRP alternative RNA splicing. Biochemistry. 42(4):951-957.		Construct of calcitonin/calcitonin gene-related peptide CALCA [796] EX3 - INT3 - EX4 - INT4 - EX5.	In vitro splicing with HeLa and HEK 293 cells nuclear extracts.	EMSA, UV crosslink.
SRp55	UGUGGA	5	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	18315555	Tardos JG, Eisenreich A, Deikus G, Bechhofer DH, Chandradas S, Zafar U, Rauch U, Bogdanov VY. (2008) SR proteins ASF/SF2 and SRp55 participate in tissue factor biosynthesis in human monocytic cells. J Thromb Haemost. 6(5):877-884.		Construct of F3 [2152] EX4-INT4-EX5-INT5-EX6 and mutants	In vivo splicing in THP-1 and SC cells.	Mutagenesis, splicing assays, EMSA, Immunoblot.
SRp55	UGCGGA	5	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	18315555	Tardos JG, Eisenreich A, Deikus G, Bechhofer DH, Chandradas S, Zafar U, Rauch U, Bogdanov VY. (2008) SR proteins ASF/SF2 and SRp55 participate in tissue factor biosynthesis in human monocytic cells. J Thromb Haemost. 6(5):877-884.		Construct of F3 [2152] EX4-INT4-EX5-INT5-EX6 and mutants	In vivo splicing in THP-1 and SC cells.	Mutagenesis, splicing assays, EMSA, Immunoblot.
SRp55	UUAGACUCUCCUUUUGGAUACCUAGAUGUUUUAACA	5	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
SRp55	UUAGACUCUCCUUUUGCAUACCUAGAUGUUUUAACA	5	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
SRp55	UUAGACUCUCCUUUUGGAUUCCUAGAUGUUUUAACA	5	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
SRp55	UUAGACUCCCCUUUUGGAUACCUAGAUGUUUUAACA	5	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
SRp55	UUAGACUCUCCUUUUGGGUACCUAGAUGUUUUAACA	5	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
SRp55	UUAGACUCUCCUUUUGGAUAUCUAGAUGUUUUAACA	5	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
SRp55	CUGAUUUGUAUUUAUUAGACUC	1	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
SRp55	AACAGAAAAAGAAAUAUUU	2	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
SRp55	CUGAUUUGUACCUAUUAGAUUC	5	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
SRp55	UACUGAAGAACAAGUAUUU	5	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
SRp55	GGAGAGAAAGAAGGGAAGAUGAGAGG	5	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	16254078	Mercado PA, Ayala YM, Romano M, Buratti E, Baralle FE. (2005) Depletion of TDP 43 overrides the need for exonic and intronic splicing enhancers in the human apoA-II gene. Nucleic Acids Res. 33(18):6000-6010.		Construct of heterologous exons of alpha-globin, fibronectin and APOA2 [336] INT2 - EX3 - INT3	In vivo splicing in Hep3B	Pull-down assay in HeLa NE, western blot. UV cross-linking, immunoprecipitation in HeLa NE, siRNA.
SRp55	GGCAGGAAGAAGAGGAGCA	3	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	18945760	Jia R, Liu X, Tao M, Kruhlak M, Guo M, Meyers C, Baker CC, Zheng ZM. (2009) Control of the papillomavirus early-to-late switch by differentially expressed SRp20. J Virol. 83(1):167-180.		Sequences deriving from BPV-1 and HPV-16 mRNAs.		EMSA, immunoprecipitation with HEK293 NE, U20S NE and U20S total cell extract.
SRp55	CCAGACACCGGAAACCCCUGCCACACCAC	2	Gene Name and Synonymous: SFRS6, splicing factor arginine/serine-rich 6, B52, MGC5045.	18945760	Jia R, Liu X, Tao M, Kruhlak M, Guo M, Meyers C, Baker CC, Zheng ZM. (2009) Control of the papillomavirus early-to-late switch by differentially expressed SRp20. J Virol. 83(1):167-180.		Sequences deriving from BPV-1 and HPV-16 mRNAs.		EMSA, immunoprecipitation with HEK293 NE, U20S NE and U20S total cell extract.
SRp75	GAGGAAGAA	5	Gene Name and Synonymous: SFRS4, splicing factor arginine/serine-rich 4.	7651409	Ramchatesingh J, Zahler AM, Neugebauer KM, Roth MB, Cooper TA. (1995) A subset of SR proteins activates splicing of the cardiac troponin T alternative exon by direct interactions with an exonic enhancer. Mol Cell Biol. 15(9):4898-4907.		Construct of cardiac troponin T TNNT2 [7139] EX4 - INT4 - EX5	In vitro splicing in HeLa nuclear extracts.	UV crosslink, competition assay, immunoprecipitation
SRp75	GAAGAAGA	5	Gene Name and Synonymous: SFRS4, splicing factor arginine/serine-rich 4.	14729981	Buratti E, Muro AF, Giombi M, Gherbassi D, Iaconcig A, Baralle FE. (2004) RNA folding affects the recruitment of SR proteins by mouse and human polypurinic enhancer elements in the fibronectin EDA exon. Mol Cell Biol. 24(3):1387-1400.		Sequences of fibronectin FN1 [2335] EX_EDA and mutants		UV crosslink, competition assay, immunoprecipitation with HeLa nuclear extracts
SRp75	GGACAGCAGAGAUCCAGU	5	Gene Name and Synonymous: SFRS4, splicing factor arginine/serine-rich 4.	18272582	Exline CM, Feng Z, Stoltzfus CM. (2008) Negative and positive mRNA splicing elements act competitively to regulate human immunodeficiency virus type 1 vif gene expression. J Virol. 82(8): 3921-3931.		Constructs of Drosophila dsx [40940] EX3-INT3-20bpEX4 adding wt or mutated ESE at EX4.	In vitro-splicing with HeLa nuclear extract.	UV cross-linking and immunoprecipitation in HeLa nuclear extract.
SRp75	CUGAUUUGUACCUAUUAGAUUC	2	Gene Name and Synonymous: SFRS4, splicing factor arginine/serine-rich 4.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
SRp75	UACUGAAGAACAAGUAUUU	2	Gene Name and Synonymous: SFRS4, splicing factor arginine/serine-rich 4.	19910374	Haque A, Buratti E, Baralle FE. (2010) Functional properties and evolutionary splicing constraints on a composite exonic regulatory element of splicing in CFTR exon 12. Nucleic Acids Res. 38(2):647-659.		Constructs of CFTR [1080] INT11-EX12-INT12. Synthesized sequences.	In vivo splicing assay in HeLa cells.	Mutagenesis, western blot, siRNA knockdown
SRp75	UGUGUCACUGUCUGGUUC	3	Gene Name and Synonymous: SFRS4, splicing factor arginine/serine-rich 4.	18945760	Jia R, Liu X, Tao M, Kruhlak M, Guo M, Meyers C, Baker CC, Zheng ZM. (2009) Control of the papillomavirus early-to-late switch by differentially expressed SRp20. J Virol. 83(1):167-180.		Sequences deriving from BPV-1 and HPV-16 mRNAs.		EMSA, immunoprecipitation with HEK293 NE, U20S NE and U20S total cell extract.
SRp75	GGCAGGAAGAAGAGGAGCA	8	Gene Name and Synonymous: SFRS4, splicing factor arginine/serine-rich 4.	18945760	Jia R, Liu X, Tao M, Kruhlak M, Guo M, Meyers C, Baker CC, Zheng ZM. (2009) Control of the papillomavirus early-to-late switch by differentially expressed SRp20. J Virol. 83(1):167-180.		Sequences deriving from BPV-1 and HPV-16 mRNAs.		EMSA, immunoprecipitation with HEK293 NE, U20S NE and U20S total cell extract.
SRp75	CCAGACACCGGAAACCCCUGCCACACCAC	2	Gene Name and Synonymous: SFRS4, splicing factor arginine/serine-rich 4.	18945760	Jia R, Liu X, Tao M, Kruhlak M, Guo M, Meyers C, Baker CC, Zheng ZM. (2009) Control of the papillomavirus early-to-late switch by differentially expressed SRp20. J Virol. 83(1):167-180.		Sequences deriving from BPV-1 and HPV-16 mRNAs.		EMSA, immunoprecipitation with HEK293 NE, U20S NE and U20S total cell extract.
TDP43	UGUGUGUGUG	-3	Gene Name and Synonymous: TARDBP, TAR DNA binding protein, ALS10. It can act as transcriptional repressor (21252238)	15826655	Ayala YM, Pantano S, D'Ambrogio A, Buratti E, Brindisi A, Marchetti C, Romano M, Baralle FE. (2005) Human, Drosophila, and C.elegans TDP43: nucleic acid binding properties and splicing regulatory function. J Mol Biol. 348(3):575-588.		Construct of tropomyosin 1 alpha TPM1 [7168] EX2 and EX3 separated by a synthetic intron with the 5' end partially corresponding to beta-globin [3043].	In vitro splicing with HeLa nuclear extracts.	UV crosslinking, EMSA.
TDP43	UGUGUGUGUGUG	-4	Gene Name and Synonymous: TARDBP, TAR DNA binding protein, ALS10. It can act as transcriptional repressor (21252238)	11470789	Buratti E, Baralle FE. (2001) Characterization and functional implications of the RNA binding properties of nuclear factor TDP-43, a novel splicing regulator of CFTR exon 9. J Biol Chem. 276(39):36337-36343.		synthesized oligos		UV crosslink, SDS-PAGE, EMSA with recombinant protein.
TDP43	UGUGUGUGUGUGUGUGUG	-6	Gene Name and Synonymous: TARDBP, TAR DNA binding protein, ALS10. It can act as transcriptional repressor (21252238)	11470789	Buratti E, Baralle FE. (2001) Characterization and functional implications of the RNA binding properties of nuclear factor TDP-43, a novel splicing regulator of CFTR exon 9. J Biol Chem. 276(39):36337-36343.		synthesized oligos		UV crosslink, SDS-PAGE, EMSA with recombinant protein.
TDP43	UGUGUGUGUGUGUGUGUGUGUG	-5	Gene Name and Synonymous: TARDBP, TAR DNA binding protein, ALS10. It can act as transcriptional repressor (21252238)	15826655	Ayala YM, Pantano S, D'Ambrogio A, Buratti E, Brindisi A, Marchetti C, Romano M, Baralle FE. (2005) Human, Drosophila, and C.elegans TDP43: nucleic acid binding properties and splicing regulatory function. J Mol Biol. 348(3):575-588.		Construct of tropomyosin 1 alpha TPM1 [7168] EX2 and EX3 separated by a synthetic intron with the 5' end partially corresponding to beta-globin [3043].	In vitro splicing with HeLa nuclear extracts.	UV crosslinking, EMSA.
TDP43	UGUGUGUGUGUGUGUGUGUGUGUGUGUUU	-5	Gene Name and Synonymous: TARDBP, TAR DNA binding protein, ALS10. It can act as transcriptional repressor (21252238)	16458894	Ayala YM, Pagani F, Baralle FE. (2006) TDP43 depletion rescues aberrant CFTR exon 9 skipping. FEBS Lett. 580(5):1339-1344.		Constructs of CFTR [1080] EX9 along with part of the flanking introns.	In vivo splicing in HeLa, Hep3B, lymphoblasts and EBV transformed lymphocytes.	Western blot, siRNA.
TDP43	UGUGUG	-2	Gene Name and Synonymous: TARDBP, TAR DNA binding protein, ALS10. It can act as transcriptional repressor (21252238)	11470789	Buratti E, Baralle FE. (2001) Characterization and functional implications of the RNA binding properties of nuclear factor TDP-43, a novel splicing regulator of CFTR exon 9. J Biol Chem. 276(39):36337-36343.		synthesized oligos		UV crosslink, SDS-PAGE, EMSA with recombinant protein.
TDP43	UGUGUGUG	-2	Gene Name and Synonymous: TARDBP, TAR DNA binding protein, ALS10. It can act as transcriptional repressor (21252238)	15826655	Ayala YM, Pantano S, D'Ambrogio A, Buratti E, Brindisi A, Marchetti C, Romano M, Baralle FE. (2005) Human, Drosophila, and C.elegans TDP43: nucleic acid binding properties and splicing regulatory function. J Mol Biol. 348(3):575-588.		Construct of tropomyosin 1 alpha TPM1 [7168] EX2 and EX3 separated by a synthetic intron with the 5' end partially corresponding to beta-globin [3043].	In vitro splicing with HeLa nuclear extracts.	UV crosslinking, EMSA.
TDP43	GUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGU	-5	Gene Name and Synonymous: TARDBP, TAR DNA binding protein, ALS10. It can act as transcriptional repressor (21252238)	16254078	Mercado PA, Ayala YM, Romano M, Buratti E, Baralle FE. (2005) Depletion of TDP 43 overrides the need for exonic and intronic splicing enhancers in the human apoA-II gene. Nucleic Acids Res. 33(18):6000-6010.		Construct of heterologous exons of alpha-globin, fibronectin and APOA2 [336] INT2 - EX3 - INT3	In vivo splicing in Hep3B	Pull-down assay in HeLa NE, western blot. UV cross-linking, immunoprecipitation in HeLa NE, siRNA.
TDP43	UGUGUGUGUGUGUGUGUGUGUGUUUUU	-1	Gene Name and Synonymous: TARDBP, TAR DNA binding protein, ALS10. It can act as transcriptional repressor (21252238)	20631008	Dujardin G, Buratti E, Charlet-Berguerand N, Martins de Araujo M, Mbopda A, Le Jossic-Corcos C, Pagani F, Ferec C, Corcos L. (2010) CELF proteins regulate CFTR pre-mRNA splicing: essential role of the divergent domain of ETR-3. Nucleic Acids Res. 38(20):7273-7285.		Constructs of wt and mutated CFTR [1080] INT8 - EX9 - INT9	In vivo splicing in HeLa, HGT-1, HCT116	EMSA with recombinant protein. siRNA.
TDP43	UGUGUGUGUGUGUGUGUGUGUGUGUUUUU	-2	Gene Name and Synonymous: TARDBP, TAR DNA binding protein, ALS10. It can act as transcriptional repressor (21252238)	20631008	Dujardin G, Buratti E, Charlet-Berguerand N, Martins de Araujo M, Mbopda A, Le Jossic-Corcos C, Pagani F, Ferec C, Corcos L. (2010) CELF proteins regulate CFTR pre-mRNA splicing: essential role of the divergent domain of ETR-3. Nucleic Acids Res. 38(20):7273-7285.		Constructs of wt and mutated CFTR [1080] INT8 - EX9 - INT9	In vivo splicing in HeLa, HGT-1, HCT116	EMSA with recombinant protein. siRNA.
TDP43	UGUGUGUGUGUGUGUGUGUGUGUGUGUUUUU	-3	Gene Name and Synonymous: TARDBP, TAR DNA binding protein, ALS10. It can act as transcriptional repressor (21252238)	20631008	Dujardin G, Buratti E, Charlet-Berguerand N, Martins de Araujo M, Mbopda A, Le Jossic-Corcos C, Pagani F, Ferec C, Corcos L. (2010) CELF proteins regulate CFTR pre-mRNA splicing: essential role of the divergent domain of ETR-3. Nucleic Acids Res. 38(20):7273-7285.		Constructs of wt and mutated CFTR [1080] INT8 - EX9 - INT9	In vivo splicing in HeLa, HGT-1, HCT116	EMSA with recombinant protein. siRNA.
TDP43	UGAGGUAGUAGGUUGUGUGGUU	-5	Gene Name and Synonymous: TARDBP, TAR DNA binding protein, ALS10. It can act as transcriptional repressor (21252238)	20423455	Buratti E, De Conti L, Stuani C, Romano M, Baralle M, Baralle F. (2010) Nuclear factor TDP-43 can affect selected microRNA levels. FEBS J. 277(10):2268-2281.		Sequences deriving from MIRLET7B [406884] and mutated MIRLET7A1 [406881], mutated MIRLET7A2 [406882], mutated MIRLET7A3 [406883].		EMSA with recombinant protein
TDP43	UGAGGUAGUAGGUUGUGUAGUU	-5	Gene Name and Synonymous: TARDBP, TAR DNA binding protein, ALS10. It can act as transcriptional repressor (21252238)	20423455	Buratti E, De Conti L, Stuani C, Romano M, Baralle M, Baralle F. (2010) Nuclear factor TDP-43 can affect selected microRNA levels. FEBS J. 277(10):2268-2281.		Sequences deriving from MIRLET7B [406884] and mutated MIRLET7A1 [406881], mutated MIRLET7A2 [406882], mutated MIRLET7A3 [406883].		EMSA with recombinant protein
TDP43	GUUGUGC	-10	Gene Name and Synonymous: TARDBP, TAR DNA binding protein, ALS10. It can act as transcriptional repressor (21252238)	19815002	Volkening K, Leystra-Lantz C, Yang W, Jaffee H, Strong MJ. (2009) Tar DNA binding protein of 43 kDa (TDP-43), 14-3-3 proteins and copper/zinc superoxide dismutase (SOD1) interact to modulate NFL mRNA stability. Implications for altered RNA processing in amyotrophic lateral sclerosis (ALS). Brain Res. 1305:168-182.		Sequences deriving fromwt and mutated NEFL [4747]		Immunoprecipitation in HEK293 cells.
TDP43	GUUUUGC	-5	Gene Name and Synonymous: TARDBP, TAR DNA binding protein, ALS10. It can act as transcriptional repressor (21252238)	19815002	Volkening K, Leystra-Lantz C, Yang W, Jaffee H, Strong MJ. (2009) Tar DNA binding protein of 43 kDa (TDP-43), 14-3-3 proteins and copper/zinc superoxide dismutase (SOD1) interact to modulate NFL mRNA stability. Implications for altered RNA processing in amyotrophic lateral sclerosis (ALS). Brain Res. 1305:168-182.		Sequences deriving fromwt and mutated NEFL [4747]		Immunoprecipitation in HEK293 cells.
TDP43	GUUGUUC	-5	Gene Name and Synonymous: TARDBP, TAR DNA binding protein, ALS10. It can act as transcriptional repressor (21252238)	19815002	Volkening K, Leystra-Lantz C, Yang W, Jaffee H, Strong MJ. (2009) Tar DNA binding protein of 43 kDa (TDP-43), 14-3-3 proteins and copper/zinc superoxide dismutase (SOD1) interact to modulate NFL mRNA stability. Implications for altered RNA processing in amyotrophic lateral sclerosis (ALS). Brain Res. 1305:168-182.		Sequences deriving fromwt and mutated NEFL [4747]		Immunoprecipitation in HEK293 cells.
TDP43	UGUGUGUGUGUGUGUGUGUGUGUG	-5	Gene Name and Synonymous: TARDBP, TAR DNA binding protein, ALS10. It can act as transcriptional repressor (21252238)	16157593	Buratti E, Brindisi A, Giombi M, Tisminetzky S, Ayala YM, Baralle FE. (2005) TDP-43 binds heterogeneous nuclear ribonucleoprotein A/B through its C-terminal tail: an important region for the inhibition of cystic fibrosis transmembrane conductance regulator exon 9 splicing. J Biol Chem. 280(45):37572-37584.		Synthesized sequences		EMSA with recombinant protein
TDP43	GGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCC	-2	Gene Name and Synonymous: TARDBP, TAR DNA binding protein, ALS10. It can act as transcriptional repressor (21252238)	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
TDP43	AAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACC	-2	Gene Name and Synonymous: TARDBP, TAR DNA binding protein, ALS10. It can act as transcriptional repressor (21252238)	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
TIA-1	UUUUUUAUUUU	-5	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	17035636	Zhu H, Hasman RA, Barron VA, Luo G, Lou H. (2006) A nuclear function of Hu proteins as neuron-specific alternative RNA processing regulators. Mol Biol Cell. 17(12):5105-5114.		Construct from CALCA [796] INT3 to 3'end fused with EX1 and half of INT1 from the major late transcription unit of adenovirus		UV crosslink, immunoprecipitation, EMSA, Western blot with HeLa nuclear extracts.
TIA-1	UUUUUUUUUUUAGUUGCUAAUUUAUUGUUUU	8	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	11106748	Forch P, Puig O, Kedersha N, Martinez C, Granneman S, Seraphin B, Anderson P, Valcarcel J. (2000) The apoptosis-promoting factor TIA-1 is a regulator of alternative pre-mRNA splicing. Mol Cell. 6(5): 1089-1098.	In this context, TIA-1 promotes exon 6 inclusion.	Synthesized sequences. Construct of Drosophila msl-2 [33565] INT1 and flanking sequences. Construct of human FAS [355] EX5 - INT5 - EX6 - INT6 - EX7.	In vitro splicing of msl-2 construct and reconstitution assay. In vivo splicing of FAS construct in mouse fibroblast Bk6 cell line overexpressing human TIA-1	UV-crosslink, Filter binding assay, Mutational analysis, Immunoprecipitation with HeLa nuclear extract.
TIA-1	UUCAUUUUUGAUUCUUUGGUUAAAAAA	-5	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	19339348	Choi EY, Pintel D. (2009) Splicing of the large intron present in the non-structural gene of minute virus of mice (MVM) is governed by TIA-1/TIAR binding downstream of the non-consensus donor. J Virol. 83(12):6306-6311		Synthesized sequences.		RNA chromatography affinity and immunoblotting in HeLa nuclear extract.
TIA-1	UUAUUUUUUUACGGUUAUAUUCUCCUUUCCC	5	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	11106748	Forch P, Puig O, Kedersha N, Martinez C, Granneman S, Seraphin B, Anderson P, Valcarcel J. (2000) The apoptosis-promoting factor TIA-1 is a regulator of alternative pre-mRNA splicing. Mol Cell. 6(5): 1089-1098.	In this context, TIA-1 promotes exon 6 inclusion.	Synthesized sequences. Construct of Drosophila msl-2 [33565] INT1 and flanking sequences. Construct of human FAS [355] EX5 - INT5 - EX6 - INT6 - EX7.	In vitro splicing of msl-2 construct and reconstitution assay. In vivo splicing of FAS construct in mouse fibroblast Bk6 cell line overexpressing human TIA-1	UV-crosslink, Filter binding assay, Mutational analysis, Immunoprecipitation with HeLa nuclear extract.
TIA-1	UGUGUGUGUGUAGUUGCUAAUUUAUUGUUUU	4	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	11106748	Forch P, Puig O, Kedersha N, Martinez C, Granneman S, Seraphin B, Anderson P, Valcarcel J. (2000) The apoptosis-promoting factor TIA-1 is a regulator of alternative pre-mRNA splicing. Mol Cell. 6(5): 1089-1098.	In this context, TIA-1 promotes exon 6 inclusion.	Synthesized sequences. Construct of Drosophila msl-2 [33565] INT1 and flanking sequences. Construct of human FAS [355] EX5 - INT5 - EX6 - INT6 - EX7.	In vitro splicing of msl-2 construct and reconstitution assay. In vivo splicing of FAS construct in mouse fibroblast Bk6 cell line overexpressing human TIA-1	UV-crosslink, Filter binding assay, Mutational analysis, Immunoprecipitation with HeLa nuclear extract.
TIA-1	AUUUA	1	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIA-1	AUUUC	4	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIA-1	AUUUUC	1	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIA-1	AUUUUG	2	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIA-1	CUUUA	2	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIA-1	CUUUC	10	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIA-1	CUUUG	2	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIA-1	CUUUUA	2	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIA-1	CUUUUC	5	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIA-1	CUUUUG	2	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIA-1	CUUUUUA	4	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIA-1	CUUUUUC	3	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIA-1	GUUUA	2	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIA-1	GUUUC	5	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIA-1	GUUUG	4	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIA-1	GUUUUA	1	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIA-1	GUUUUC	2	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIA-1	GUUUUG	1	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIA-1	GUUUUUC	1	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIA-1	GUUUUUG	1	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIA-1	GUUUUUUUUC	1	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIA-1	UCUUGCUUUGUUCAAAC	5	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	16109372	Izquierdo JM, Majos N, Bonnal S, Martinez C, Castelo R, Guigo R, Bilbao D, Valcarcel J. (2005) Regulation of Fas alternative splicing by antagonistic effects of TIA-1 and PTB on exon definition. Mol Cell. 19(4):475-484.		Sequences deriving from wt and mutated FAS [355]. Construct of FAS [355] EX5 - INT5 - EX6 - INT6 - EX7	In vitro splicing in HeLa NE	UV cross-linking, immunoprecipitation with HeLa NE
TIA-1	UAUUCUUUCUGAACAGUAUUUAAGGUUUCCAAUAAAAUGUACACCCCUCAG	-5	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	16890199	Izquierdo JM. (2006) Control of the ATP synthase beta subunit expression by RNA-binding proteins TIA-1, TIAR, and HuR. Biochem Biophys Res Commun. 348(2):703-711.		Sequences deriving from ATP5B [506]		UV cross-linking and immunoprecipitation with HeLa cellular extracts and recombinant protein.
TIA-1	UAUUGCUUGGGUAAUUUUUUUUUUUAGUUGCUAAUUUAUUG	8	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	17488725	Izquierdo JM, Valcarcel J. (2007) Two isoforms of the T-cell intracellular antigen 1 (TIA-1) splicing factor display distinct splicing regulation activities. Control of TIA-1 isoform ratio by TIA-1-related protein. J Biol Chem. 282(27):19410-19417.		Sequences deriving from FAS [355] and Drosophila msl-2 [33565]		EMSA with recombinant protein
TIA-1	GCCAAUUCCACUAAUUGUUUGGGGUAAGUUCUUGCUUUGUUCAAACUGCAGAUUGAAA	4	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	17488725	Izquierdo JM, Valcarcel J. (2007) Two isoforms of the T-cell intracellular antigen 1 (TIA-1) splicing factor display distinct splicing regulation activities. Control of TIA-1 isoform ratio by TIA-1-related protein. J Biol Chem. 282(27):19410-19417.		Sequences deriving from FAS [355] and Drosophila msl-2 [33565]		EMSA with recombinant protein
TIA-1	GUAAUUUAUUUAUUUCCUGUUCAACAUAAAUAAAUUAC	5	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	17580305	McAlinden A, Liang L, Mukudai Y, Imamura T, Sandell LJ. (2007) Nuclear protein TIA-1 regulates COL2A1 alternative splicing and interacts with precursor mRNA and genomic DNA. J Biol Chem. 282(33):24444-24454.		Sequences deriving from COL2A1 [1280]. Constructs of COL2A1 [1280] EX1 - INT1 - EX2 - INT2 - EX3.	In vivo splicing in TC28	UV cross-linking with recombinant protein
TIA-1	UUAUUAUUUAUUAUUUAUUUAUUAUUUAUUUAUUU	-8	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	17965020	Buxade M, Morrice N, Krebs DL, Proud CG. (2008) The PSF.p54nrb complex is a novel Mnk substrate that binds the mRNA for tumor necrosis factor alpha. J Biol Chem. 283(1):57-65.		Sequences deriving from FOS [2353], PTGS2 [5743] and mouse Tnf [21926], Csf2 [12981], Ifng [15978].		Pull-down, western blot with Jurkat extracts.
TIA-1	UUUUUAAAUAUUUAUUUAUUUAUUUAUUUAUUUU	-8	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	17965020	Buxade M, Morrice N, Krebs DL, Proud CG. (2008) The PSF.p54nrb complex is a novel Mnk substrate that binds the mRNA for tumor necrosis factor alpha. J Biol Chem. 283(1):57-65.		Sequences deriving from FOS [2353], PTGS2 [5743] and mouse Tnf [21926], Csf2 [12981], Ifng [15978].		Pull-down, western blot with Jurkat extracts.
TIA-1	GUUUUUAAUUUAUUUAUUAAGAUGGAUUCU	-8	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	17965020	Buxade M, Morrice N, Krebs DL, Proud CG. (2008) The PSF.p54nrb complex is a novel Mnk substrate that binds the mRNA for tumor necrosis factor alpha. J Biol Chem. 283(1):57-65.		Sequences deriving from FOS [2353], PTGS2 [5743] and mouse Tnf [21926], Csf2 [12981], Ifng [15978].		Pull-down, western blot with Jurkat extracts.
TIA-1	AAACCUAUUUAUUAAUAUUUAAAACUAUUUAUAUG	-8	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	17965020	Buxade M, Morrice N, Krebs DL, Proud CG. (2008) The PSF.p54nrb complex is a novel Mnk substrate that binds the mRNA for tumor necrosis factor alpha. J Biol Chem. 283(1):57-65.		Sequences deriving from FOS [2353], PTGS2 [5743] and mouse Tnf [21926], Csf2 [12981], Ifng [15978].		Pull-down, western blot with Jurkat extracts.
TIA-1	CUAAUGAUCAUAUUUAUUUAUUUAUAUGAACCAUG	-8	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	17965020	Buxade M, Morrice N, Krebs DL, Proud CG. (2008) The PSF.p54nrb complex is a novel Mnk substrate that binds the mRNA for tumor necrosis factor alpha. J Biol Chem. 283(1):57-65.		Sequences deriving from FOS [2353], PTGS2 [5743] and mouse Tnf [21926], Csf2 [12981], Ifng [15978].		Pull-down, western blot with Jurkat extracts.
TIA-1	GUUAUAUUCUCCUUUC	10	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	24682828	Wang I, Hennig J, Jagtap PK, Sonntag M, Valcarcel J, Sattler M. (2014) Structure, dynamics and RNA binding of the multi-domain splicing factor TIA-1. Nucleic Acids Res.		Sequences deriving from FAS [355]. Synthetic sequences.		NMR, isothermal titration calorimetry and SAXS.
TIA-1	UUCUCCUUUC	1	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	24682828	Wang I, Hennig J, Jagtap PK, Sonntag M, Valcarcel J, Sattler M. (2014) Structure, dynamics and RNA binding of the multi-domain splicing factor TIA-1. Nucleic Acids Res.		Sequences deriving from FAS [355]. Synthetic sequences.		NMR, isothermal titration calorimetry and SAXS.
TIA-1	UUUUUUUUU	1	Gene Name and Synonymous: TIA1, cytotoxic granule-associated RNA binding protein.	24682828	Wang I, Hennig J, Jagtap PK, Sonntag M, Valcarcel J, Sattler M. (2014) Structure, dynamics and RNA binding of the multi-domain splicing factor TIA-1. Nucleic Acids Res.		Sequences deriving from FAS [355]. Synthetic sequences.		NMR, isothermal titration calorimetry and SAXS.
TIAL1	UUUUUUAUUUU	-5	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	17035636	Zhu H, Hasman RA, Barron VA, Luo G, Lou H. (2006) A nuclear function of Hu proteins as neuron-specific alternative RNA processing regulators. Mol Biol Cell. 17(12):5105-5114.		Construct from CALCA [796] INT3 to 3'end fused with EX1 and half of INT1 from the major late transcription unit of adenovirus		UV crosslink, immunoprecipitation, EMSA, Western blot with HeLa nuclear extracts.
TIAL1	UUCAUUUUUGAUUCUUUGGUUAAAAAA	-5	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	19339348	Choi EY, Pintel D. (2009) Splicing of the large intron present in the non-structural gene of minute virus of mice (MVM) is governed by TIA-1/TIAR binding downstream of the non-consensus donor. J Virol. 83(12):6306-6311		Synthesized sequences.		RNA chromatography affinity and immunoblotting in HeLa nuclear extract.
TIAL1	AUUUA	1	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIAL1	AUUUC	7	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIAL1	AUUUUA	2	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIAL1	AUUUUC	2	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIAL1	AUUUUG	2	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIAL1	AUUUUUA	1	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIAL1	AUUUUUUUC	2	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIAL1	AUUUUUUUUUUUA	2	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIAL1	CUUUA	3	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIAL1	CUUUC	10	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIAL1	CUUUG	5	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIAL1	CUUUUA	5	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIAL1	CUUUUC	5	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIAL1	CUUUUG	2	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIAL1	CUUUUUA	1	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIAL1	CUUUUUC	3	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIAL1	CUUUUUG	5	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIAL1	CUUUUUUC	2	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIAL1	CUUUUUUUUUUUC	1	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIAL1	GUUUC	6	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIAL1	GUUUG	5	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIAL1	GUUUUC	1	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIAL1	GUUUUUC	2	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIAL1	GUUUUUG	1	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIAL1	GUUUUUUUC	1	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIAL1	GUUUUUUUUG	1	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	8576255	Dember LM, Kim ND, Liu KQ, Anderson P. (1996) Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities. J Biol Chem. 271(5):2783-2788.		Sequences of 68 nt random for SELEX.		SELEX of 68nt random sequences with recombinant protein. Winners confirmed by UV cross-linking, competition assay.
TIAL1	UUUUAAAUUUU	-5	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	12356730	Iseni F, Garcin D, Nishio M, Kedersha N, Anderson P, Kolakofsky D. (2002) Sendai virus trailer RNA binds TIAR, a cellular protein involved in virus-induced apoptosis. EMBO J. 21(19):5141-5150.		Sendai virus (SeV) trailer (tr) RNA and mutants.		UV cross-linking and immunoprecipitation with HeLa cytoplasmic extracts
TIAL1	UUUUCAGUUUU	-5	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	12356730	Iseni F, Garcin D, Nishio M, Kedersha N, Anderson P, Kolakofsky D. (2002) Sendai virus trailer RNA binds TIAR, a cellular protein involved in virus-induced apoptosis. EMBO J. 21(19):5141-5150.		Sendai virus (SeV) trailer (tr) RNA and mutants.		UV cross-linking and immunoprecipitation with HeLa cytoplasmic extracts
TIAL1	AAAAUGCUUUUUUUUUUUUA	-3	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	16091628	Suswam EA, Li YY, Mahtani H, King PH. (2005) Novel DNA-binding properties of the RNA-binding protein TIAR. Nucleic Acids Res. 33(14):4507-4518.		Sequences deriving from VEGFA [7422]		UV cross-linking, competition assay with recombinant protein
TIAL1	UAUUCUUUCUGAACAGUAUUUAAGGUUUCCAAUAAAAUGUACACCCCUCAG	-5	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	16890199	Izquierdo JM. (2006) Control of the ATP synthase beta subunit expression by RNA-binding proteins TIA-1, TIAR, and HuR. Biochem Biophys Res Commun. 348(2):703-711.		Sequences deriving from ATP5B [506]		UV cross-linking and immunoprecipitation with HeLa cellular extracts and recombinant protein.
TIAL1	UUGCCACCUCCUGCUCCUGCCCAGACAG	-10	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	17682065	Kim HS, Kuwano Y, Zhan M, Pullmann R Jr, Mazan-Mamczarz K, Li H, Kedersha N, Anderson P, Wilce MC, Gorospe M, Wilce JA. (2007) Elucidation of a C-rich signature motif in target mRNAs of RNA-binding protein TIAR. Mol Cell Biol. 27(19):6806-6817.		Synthesized sequences		Surface plasmon resonance
TIAL1	GGGGGGUUUUUUUUUUUUUUUUUGGGGG	-1	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	17682065	Kim HS, Kuwano Y, Zhan M, Pullmann R Jr, Mazan-Mamczarz K, Li H, Kedersha N, Anderson P, Wilce MC, Gorospe M, Wilce JA. (2007) Elucidation of a C-rich signature motif in target mRNAs of RNA-binding protein TIAR. Mol Cell Biol. 27(19):6806-6817.		Synthesized sequences		Surface plasmon resonance
TIAL1	GGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCCGGGGCC	6	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
TIAL1	AAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACCAAAACC	4	Gene Name and Synonymous: TIAL1, TIA1 cytotoxic granule-associated RNA binding protein-like 1, TCBP, TIAR, MGC33401.	23381195	Mori K, Lammich S, Mackenzie IR, Forne I, Zilow S, Kretzschmar H, Edbauer D, Janssens J, Kleinberger G, Cruts M, Herms J, Neumann M, Van Broeckhoven C, Arzberger T, Haass C. (2013) hnRNP A3 binds to GGGGCC repeats and is a constituent of p62-positive/TDP43-negative inclusions in the hippocampus of patients with C9orf72 mutations. Acta Neuropathol. 125(3):413-423.		Synthetic sequences.		RNA pull down with HEK293 nuclear extract and LC–MS. Some protein confirmed by Western blot.
YB-1	ACAAC	5	Gene Name and Synonymous: YBX1, Y box binding protein 1, YB1, BP-8, CSDB, DBPB, CSDA2, NSEP1, NSEP-1, MDR-NF1, MGC104858, MGC110976, MGC117250.	18503770	Skoko N, Baralle M, Buratti E, Baralle FE. (2008) The pathological splicing mutation c.6792C>G in NF1 exon 37 causes a change of tenancy between antagonistic splicing factors. FEBS Lett. 582(15):2231-2236.		Constructs spanning from NF1 [4763] EX34 to EX38 for in vivo splicing. Sequences of NF1 EX37.	In vivo splicing in HeLa, siRNA.	UV crosslink, EMSA, and pull-down assays with HeLa nuclear extracts.
YB-1	CACCAGUCACCGC	5	Gene Name and Synonymous: YBX1, Y box binding protein 1, YB1, BP-8, CSDB, DBPB, CSDA2, NSEP1, NSEP-1, MDR-NF1, MGC104858, MGC110976, MGC117250.	11447123	Stickeler E, Fraser SD, Honig A, Chen AL, Berget SM, Cooper TA. (2001) The RNA binding protein YB-1 binds A/C-rich exon enhancers and stimulates splicing of the CD44 alternative exon v4. EMBO J. 20(14):3821-3830.		synthesized oligos		UV crosslink and competition assay in HeLa nuclear extracts.
YB-1	CACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACA	5	Gene Name and Synonymous: YBX1, Y box binding protein 1, YB1, BP-8, CSDB, DBPB, CSDA2, NSEP1, NSEP-1, MDR-NF1, MGC104858, MGC110976, MGC117250.	12447348	Hui J, Stangl K, Lane WS, Bindereif A. (2003) HnRNP L stimulates splicing of the eNOS gene by binding to variable-length CA repeats. Nat Struct Biol. 10(1): 33-37.	In this context, CA repeats act as an unusual intronic splicing enhancer, whose activity depends on the CA repeat number.	Construct of eNOS [NOS3, 4846] EX14 - INT14 - EX15 without CA-repeats or with 19, 32, 38 CA-repeats in INT14. Synthesized sequences.	In vitro splicing in HeLa nuclear extract. In vivo splicing in HeLa, HEK293 and HUVEC cells. In vitro splicing in hnRNP L-depleted HeLa nuclear extract and complementation.	UV crosslinking in HeLa nuclear extract, affinity purification and mass-spectrometry analysis.
YB-1	CAACCACACCAC	5	Gene Name and Synonymous: YBX1, Y box binding protein 1, YB1, BP-8, CSDB, DBPB, CSDA2, NSEP1, NSEP-1, MDR-NF1, MGC104858, MGC110976, MGC117250.	11447123	Stickeler E, Fraser SD, Honig A, Chen AL, Berget SM, Cooper TA. (2001) The RNA binding protein YB-1 binds A/C-rich exon enhancers and stimulates splicing of the CD44 alternative exon v4. EMBO J. 20(14):3821-3830.		synthesized oligos		UV crosslink and competition assay in HeLa nuclear extracts.
YB-1	ACCACACAAAACA	5	Gene Name and Synonymous: YBX1, Y box binding protein 1, YB1, BP-8, CSDB, DBPB, CSDA2, NSEP1, NSEP-1, MDR-NF1, MGC104858, MGC110976, MGC117250.	11447123	Stickeler E, Fraser SD, Honig A, Chen AL, Berget SM, Cooper TA. (2001) The RNA binding protein YB-1 binds A/C-rich exon enhancers and stimulates splicing of the CD44 alternative exon v4. EMBO J. 20(14):3821-3830.		synthesized oligos		UV crosslink and competition assay in HeLa nuclear extracts.
YB-1	CAACCACAA	5	Gene Name and Synonymous: YBX1, Y box binding protein 1, YB1, BP-8, CSDB, DBPB, CSDA2, NSEP1, NSEP-1, MDR-NF1, MGC104858, MGC110976, MGC117250.	11447123	Stickeler E, Fraser SD, Honig A, Chen AL, Berget SM, Cooper TA. (2001) The RNA binding protein YB-1 binds A/C-rich exon enhancers and stimulates splicing of the CD44 alternative exon v4. EMBO J. 20(14):3821-3830.		synthesized oligos		UV crosslink and competition assay in HeLa nuclear extracts.
YB-1	AGAAC	2	Gene Name and Synonymous: YBX1, Y box binding protein 1, YB1, BP-8, CSDB, DBPB, CSDA2, NSEP1, NSEP-1, MDR-NF1, MGC104858, MGC110976, MGC117250.	18503770	Skoko N, Baralle M, Buratti E, Baralle FE. (2008) The pathological splicing mutation c.6792C>G in NF1 exon 37 causes a change of tenancy between antagonistic splicing factors. FEBS Lett. 582(15):2231-2236.		Constructs spanning from NF1 [4763] EX34 to EX38 for in vivo splicing. Sequences of NF1 EX37.	In vivo splicing in HeLa, siRNA.	UV crosslink, EMSA, and pull-down assays with HeLa nuclear extracts.
YB-1	CCUGCGG	5	Gene Name and Synonymous: YBX1, Y box binding protein 1, YB1, BP-8, CSDB, DBPB, CSDA2, NSEP1, NSEP-1, MDR-NF1, MGC104858, MGC110976, MGC117250.	19561594	Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol. 27(7):667-670.		Synthesized sequences		RNAcompete using recombinant protein
YB-1	GCCUGCG	5	Gene Name and Synonymous: YBX1, Y box binding protein 1, YB1, BP-8, CSDB, DBPB, CSDA2, NSEP1, NSEP-1, MDR-NF1, MGC104858, MGC110976, MGC117250.	19561594	Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol. 27(7):667-670.		Synthesized sequences		RNAcompete using recombinant protein
YB-1	CUGCGGU	5	Gene Name and Synonymous: YBX1, Y box binding protein 1, YB1, BP-8, CSDB, DBPB, CSDA2, NSEP1, NSEP-1, MDR-NF1, MGC104858, MGC110976, MGC117250.	19561594	Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol. 27(7):667-670.		Synthesized sequences		RNAcompete using recombinant protein
YB-1	GGUCUGC	5	Gene Name and Synonymous: YBX1, Y box binding protein 1, YB1, BP-8, CSDB, DBPB, CSDA2, NSEP1, NSEP-1, MDR-NF1, MGC104858, MGC110976, MGC117250.	19561594	Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol. 27(7):667-670.		Synthesized sequences		RNAcompete using recombinant protein
YB-1	CCCUGCG	5	Gene Name and Synonymous: YBX1, Y box binding protein 1, YB1, BP-8, CSDB, DBPB, CSDA2, NSEP1, NSEP-1, MDR-NF1, MGC104858, MGC110976, MGC117250.	19561594	Ray D, Kazan H, Chan ET, Pena Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. (2009) Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins. Nat Biotechnol. 27(7):667-670.		Synthesized sequences		RNAcompete using recombinant protein
YB-1	GGUCUCUCUGGUUAGACCUGAUCUGAGCCUGGGAGCUCUCUGGCUAACUAGGGAACC	5	Gene Name and Synonymous: YBX1, Y box binding protein 1, YB1, BP-8, CSDB, DBPB, CSDA2, NSEP1, NSEP-1, MDR-NF1, MGC104858, MGC110976, MGC117250.	10573156	Ansari SA, Safak M, Gallia GL, Sawaya BE, Amini S, Khalili K. (1999) Interaction of YB-1 with human immunodeficiency virus type 1 Tat and TAR RNA modulates viral promoter activity. J Gen Virol. 80 (Pt 10):2629-2638.		Synthesized sequences and HIV-1 TAR		EMSA with recombinant protein
YB-1	GGCCUGAUCUGAGCCUGGGAGCUCUCUGGCC	5	Gene Name and Synonymous: YBX1, Y box binding protein 1, YB1, BP-8, CSDB, DBPB, CSDA2, NSEP1, NSEP-1, MDR-NF1, MGC104858, MGC110976, MGC117250.	10573156	Ansari SA, Safak M, Gallia GL, Sawaya BE, Amini S, Khalili K. (1999) Interaction of YB-1 with human immunodeficiency virus type 1 Tat and TAR RNA modulates viral promoter activity. J Gen Virol. 80 (Pt 10):2629-2638.		Synthesized sequences and HIV-1 TAR		EMSA with recombinant protein
YB-1	CCCUCUGCCACCCAGGCAGGCCCUGCCUUCAGCCCUGGCCCAGAGCUGGAACACUCUCUGAGAUGCCCCUCUGCCUGGGCUUAUGCCCUCAGAUGGAGACAUUGGAUGUGGAGCUCCUGCUGGAUGCGUGCCCUGACCCCUGCACCAGCCCUUCCCUGCUUUGAG	-5	Gene Name and Synonymous: YBX1, Y box binding protein 1, YB1, BP-8, CSDB, DBPB, CSDA2, NSEP1, NSEP-1, MDR-NF1, MGC104858, MGC110976, MGC117250.	12600897	Skalweit A, Doller A, Huth A, Kahne T, Persson PB, Thiele BJ. (2003) Posttranscriptional control of renin synthesis: identification of proteins interacting with renin mRNA 3'-untranslated region. Circ Res. 92(4):419-427.		Sequences deriving from REN [5972]		EMSA, UV cross-linking with Calu-6 cell extracts. RNA-affinity chromatography with MALDI-TOF-MS. Western blot.
YB-1	UCUCGGGGGGGUUUUCAUCUAUGAGGGUGUUUCCUCUAAACCUACGAGGGAGGAACACCUGAUCUUACAGAAAAUACCACCUCGAGA	5	Gene Name and Synonymous: YBX1, Y box binding protein 1, YB1, BP-8, CSDB, DBPB, CSDA2, NSEP1, NSEP-1, MDR-NF1, MGC104858, MGC110976, MGC117250.	16508950	Shen Q, Fan L, Newburger PE. (2006) Nuclease sensitive element binding protein 1 associates with the selenocysteine insertion sequence and functions in mammalian selenoprotein translation. J Cell Physiol. 207(3):775-783.		Sequences deriving from GPX1 [2876]		UV cross-linking, immunoprecipitation in HeLa
YB-1	GCAGCCAGACAGCGAGGGCC	-1	Gene Name and Synonymous: YBX1, Y box binding protein 1, YB1, BP-8, CSDB, DBPB, CSDA2, NSEP1, NSEP-1, MDR-NF1, MGC104858, MGC110976, MGC117250.	18075498	Fraser DJ, Phillips AO, Zhang X, van Roeyen CR, Muehlenberg P, En-Nia A, Mertens PR. (2008) Y-box protein-1 controls transforming growth factor-beta1 translation in proximal tubular cells. Kidney Int. 73(6):724-732.		Sequences deriving from TGFB1 [7040]		EMSA supershift, UV cross-linking, competition assay with HK-2 protein extracts.
YB-1	GGGCACCCCCCCGGCUCUG	-10	Gene Name and Synonymous: YBX1, Y box binding protein 1, YB1, BP-8, CSDB, DBPB, CSDA2, NSEP1, NSEP-1, MDR-NF1, MGC104858, MGC110976, MGC117250.	18075498	Fraser DJ, Phillips AO, Zhang X, van Roeyen CR, Muehlenberg P, En-Nia A, Mertens PR. (2008) Y-box protein-1 controls transforming growth factor-beta1 translation in proximal tubular cells. Kidney Int. 73(6):724-732.		Sequences deriving from TGFB1 [7040]		EMSA supershift, UV cross-linking, competition assay with HK-2 protein extracts.
YB-1	CUGCACCACCACCUAUCUA	2	Gene Name and Synonymous: YBX1, Y box binding protein 1, YB1, BP-8, CSDB, DBPB, CSDA2, NSEP1, NSEP-1, MDR-NF1, MGC104858, MGC110976, MGC117250.	18945760	Jia R, Liu X, Tao M, Kruhlak M, Guo M, Meyers C, Baker CC, Zheng ZM. (2009) Control of the papillomavirus early-to-late switch by differentially expressed SRp20. J Virol. 83(1):167-180.		Sequences deriving from BPV-1 and HPV-16 mRNAs.		EMSA, immunoprecipitation with HEK293 NE, U20S NE and U20S total cell extract.
YB-1	GGCAGGAAGAAGAGGAGCA	8	Gene Name and Synonymous: YBX1, Y box binding protein 1, YB1, BP-8, CSDB, DBPB, CSDA2, NSEP1, NSEP-1, MDR-NF1, MGC104858, MGC110976, MGC117250.	18945760	Jia R, Liu X, Tao M, Kruhlak M, Guo M, Meyers C, Baker CC, Zheng ZM. (2009) Control of the papillomavirus early-to-late switch by differentially expressed SRp20. J Virol. 83(1):167-180.		Sequences deriving from BPV-1 and HPV-16 mRNAs.		EMSA, immunoprecipitation with HEK293 NE, U20S NE and U20S total cell extract.
YB-1	CCAGACACCGGAAACCCCUGCCACACCAC	5	Gene Name and Synonymous: YBX1, Y box binding protein 1, YB1, BP-8, CSDB, DBPB, CSDA2, NSEP1, NSEP-1, MDR-NF1, MGC104858, MGC110976, MGC117250.	18945760	Jia R, Liu X, Tao M, Kruhlak M, Guo M, Meyers C, Baker CC, Zheng ZM. (2009) Control of the papillomavirus early-to-late switch by differentially expressed SRp20. J Virol. 83(1):167-180.		Sequences deriving from BPV-1 and HPV-16 mRNAs.		EMSA, immunoprecipitation with HEK293 NE, U20S NE and U20S total cell extract.
YB-1	CAUC	10	Gene Name and Synonymous: YBX1, Y box binding protein 1, YB1, BP-8, CSDB, DBPB, CSDA2, NSEP1, NSEP-1, MDR-NF1, MGC104858, MGC110976, MGC117250.	22730292	Wei WJ, Mu SR, Heiner M, Fu X, Cao LJ, Gong XF, Bindereif A, Hui J. (2012) YB-1 binds to CAUC motifs and stimulates exon inclusion by enhancing the recruitment of U2AF to weak polypyrimidine tracts. Nucleic Acids Res. 40(17):8622-8636.		Sequences of 20 nt random for SELEX. Constructs of wt and mutated CD44 [960] RSV - INTv4 - EXv5 - INTv5 - RSV	In vivo splicing in HEK-293 cells.	SELEX of 20nt random sequences with recombinant protein. Winners confirmed by EMSA with recombinant protein. In vivo splicing in HEK-293 cells with wt and mutated sequences, EMSA. UV crosslinking.
YB-1	CACC	6	Gene Name and Synonymous: YBX1, Y box binding protein 1, YB1, BP-8, CSDB, DBPB, CSDA2, NSEP1, NSEP-1, MDR-NF1, MGC104858, MGC110976, MGC117250.	22730292	Wei WJ, Mu SR, Heiner M, Fu X, Cao LJ, Gong XF, Bindereif A, Hui J. (2012) YB-1 binds to CAUC motifs and stimulates exon inclusion by enhancing the recruitment of U2AF to weak polypyrimidine tracts. Nucleic Acids Res. 40(17):8622-8636.		Sequences of 20 nt random for SELEX. Constructs of wt and mutated CD44 [960] RSV - INTv4 - EXv5 - INTv5 - RSV	In vivo splicing in HEK-293 cells.	SELEX of 20nt random sequences with recombinant protein. Winners confirmed by EMSA with recombinant protein. In vivo splicing in HEK-293 cells with wt and mutated sequences, EMSA. UV crosslinking.
YB-1	GAUC	5	Gene Name and Synonymous: YBX1, Y box binding protein 1, YB1, BP-8, CSDB, DBPB, CSDA2, NSEP1, NSEP-1, MDR-NF1, MGC104858, MGC110976, MGC117250.	22730292	Wei WJ, Mu SR, Heiner M, Fu X, Cao LJ, Gong XF, Bindereif A, Hui J. (2012) YB-1 binds to CAUC motifs and stimulates exon inclusion by enhancing the recruitment of U2AF to weak polypyrimidine tracts. Nucleic Acids Res. 40(17):8622-8636.		Sequences of 20 nt random for SELEX. Constructs of wt and mutated CD44 [960] RSV - INTv4 - EXv5 - INTv5 - RSV	In vivo splicing in HEK-293 cells.	SELEX of 20nt random sequences with recombinant protein. Winners confirmed by EMSA with recombinant protein. In vivo splicing in HEK-293 cells with wt and mutated sequences, EMSA. UV crosslinking.
YB-1	CAUCUG	10	Gene Name and Synonymous: YBX1, Y box binding protein 1, YB1, BP-8, CSDB, DBPB, CSDA2, NSEP1, NSEP-1, MDR-NF1, MGC104858, MGC110976, MGC117250.	22730292	Wei WJ, Mu SR, Heiner M, Fu X, Cao LJ, Gong XF, Bindereif A, Hui J. (2012) YB-1 binds to CAUC motifs and stimulates exon inclusion by enhancing the recruitment of U2AF to weak polypyrimidine tracts. Nucleic Acids Res. 40(17):8622-8636.		Sequences of 20 nt random for SELEX. Constructs of wt and mutated CD44 [960] RSV - INTv4 - EXv5 - INTv5 - RSV	In vivo splicing in HEK-293 cells.	SELEX of 20nt random sequences with recombinant protein. Winners confirmed by EMSA with recombinant protein. In vivo splicing in HEK-293 cells with wt and mutated sequences, EMSA. UV crosslinking.
YB-1	CAUCGC	8	Gene Name and Synonymous: YBX1, Y box binding protein 1, YB1, BP-8, CSDB, DBPB, CSDA2, NSEP1, NSEP-1, MDR-NF1, MGC104858, MGC110976, MGC117250.	22730292	Wei WJ, Mu SR, Heiner M, Fu X, Cao LJ, Gong XF, Bindereif A, Hui J. (2012) YB-1 binds to CAUC motifs and stimulates exon inclusion by enhancing the recruitment of U2AF to weak polypyrimidine tracts. Nucleic Acids Res. 40(17):8622-8636.		Sequences of 20 nt random for SELEX. Constructs of wt and mutated CD44 [960] RSV - INTv4 - EXv5 - INTv5 - RSV	In vivo splicing in HEK-293 cells.	SELEX of 20nt random sequences with recombinant protein. Winners confirmed by EMSA with recombinant protein. In vivo splicing in HEK-293 cells with wt and mutated sequences, EMSA. UV crosslinking.
YB-1	GAUCUG	8	Gene Name and Synonymous: YBX1, Y box binding protein 1, YB1, BP-8, CSDB, DBPB, CSDA2, NSEP1, NSEP-1, MDR-NF1, MGC104858, MGC110976, MGC117250.	22730292	Wei WJ, Mu SR, Heiner M, Fu X, Cao LJ, Gong XF, Bindereif A, Hui J. (2012) YB-1 binds to CAUC motifs and stimulates exon inclusion by enhancing the recruitment of U2AF to weak polypyrimidine tracts. Nucleic Acids Res. 40(17):8622-8636.		Sequences of 20 nt random for SELEX. Constructs of wt and mutated CD44 [960] RSV - INTv4 - EXv5 - INTv5 - RSV	In vivo splicing in HEK-293 cells.	SELEX of 20nt random sequences with recombinant protein. Winners confirmed by EMSA with recombinant protein. In vivo splicing in HEK-293 cells with wt and mutated sequences, EMSA. UV crosslinking.
YB-1	CAUCAUC	10	Gene Name and Synonymous: YBX1, Y box binding protein 1, YB1, BP-8, CSDB, DBPB, CSDA2, NSEP1, NSEP-1, MDR-NF1, MGC104858, MGC110976, MGC117250.	22730292	Wei WJ, Mu SR, Heiner M, Fu X, Cao LJ, Gong XF, Bindereif A, Hui J. (2012) YB-1 binds to CAUC motifs and stimulates exon inclusion by enhancing the recruitment of U2AF to weak polypyrimidine tracts. Nucleic Acids Res. 40(17):8622-8636.		Sequences of 20 nt random for SELEX. Constructs of wt and mutated CD44 [960] RSV - INTv4 - EXv5 - INTv5 - RSV	In vivo splicing in HEK-293 cells.	SELEX of 20nt random sequences with recombinant protein. Winners confirmed by EMSA with recombinant protein. In vivo splicing in HEK-293 cells with wt and mutated sequences, EMSA. UV crosslinking.
ZRANB2	AGGUAA	-10	Gene Name and Synonymous: ZRANB2, zinc finger, RAN-binding domain containing 2, ZIS, ZIS1, ZIS2, ZNF265, FLJ41119, DKFZp686J183, DKFZp686N09117. ZRANB2 (ZNF265) is an SR-like protein that induce exclusion of EX2 and EX3 from the Tra2beta1 pre-mRNA in HEK293 cell (PMID: 11448987).	19304800	Loughlin FE, Mansfield RE, Vaz PM, McGrath AP, Setiyaputra S, Gamsjaeger R, Chen ES, Morris BJ, Guss JM, Mackay JP. (2009) The zinc fingers of the SR-like protein ZRANB2 are single-stranded RNA-binding domains that recognize 5' splice site-like sequences. Proc Natl Acad Sci U S A. 106(14): 5581-5586.	Two close motifs make binding significantly stronger.	Synthesized oligos. Sequences of 25nt random for SELEX.		SELEX of 25nt random with recombinant protein. EMSA, Fluorescence Anisotropy, NMR Spectroscopy.
ZRANB2	CGGUAA	-3	Gene Name and Synonymous: ZRANB2, zinc finger, RAN-binding domain containing 2, ZIS, ZIS1, ZIS2, ZNF265, FLJ41119, DKFZp686J183, DKFZp686N09117. ZRANB2 (ZNF265) is an SR-like protein that induce exclusion of EX2 and EX3 from the Tra2beta1 pre-mRNA in HEK293 cell (PMID: 11448987).	19304800	Loughlin FE, Mansfield RE, Vaz PM, McGrath AP, Setiyaputra S, Gamsjaeger R, Chen ES, Morris BJ, Guss JM, Mackay JP. (2009) The zinc fingers of the SR-like protein ZRANB2 are single-stranded RNA-binding domains that recognize 5' splice site-like sequences. Proc Natl Acad Sci U S A. 106(14): 5581-5586.	Two close motifs make binding significantly stronger.	Synthesized oligos. Sequences of 25nt random for SELEX.		SELEX of 25nt random with recombinant protein. EMSA, Fluorescence Anisotropy, NMR Spectroscopy.
ZRANB2	UGGUAA	-2	Gene Name and Synonymous: ZRANB2, zinc finger, RAN-binding domain containing 2, ZIS, ZIS1, ZIS2, ZNF265, FLJ41119, DKFZp686J183, DKFZp686N09117. ZRANB2 (ZNF265) is an SR-like protein that induce exclusion of EX2 and EX3 from the Tra2beta1 pre-mRNA in HEK293 cell (PMID: 11448987).	19304800	Loughlin FE, Mansfield RE, Vaz PM, McGrath AP, Setiyaputra S, Gamsjaeger R, Chen ES, Morris BJ, Guss JM, Mackay JP. (2009) The zinc fingers of the SR-like protein ZRANB2 are single-stranded RNA-binding domains that recognize 5' splice site-like sequences. Proc Natl Acad Sci U S A. 106(14): 5581-5586.	Two close motifs make binding significantly stronger.	Synthesized oligos. Sequences of 25nt random for SELEX.		SELEX of 25nt random with recombinant protein. EMSA, Fluorescence Anisotropy, NMR Spectroscopy.
ZRANB2	AGGUAG	-2	Gene Name and Synonymous: ZRANB2, zinc finger, RAN-binding domain containing 2, ZIS, ZIS1, ZIS2, ZNF265, FLJ41119, DKFZp686J183, DKFZp686N09117. ZRANB2 (ZNF265) is an SR-like protein that induce exclusion of EX2 and EX3 from the Tra2beta1 pre-mRNA in HEK293 cell (PMID: 11448987).	19304800	Loughlin FE, Mansfield RE, Vaz PM, McGrath AP, Setiyaputra S, Gamsjaeger R, Chen ES, Morris BJ, Guss JM, Mackay JP. (2009) The zinc fingers of the SR-like protein ZRANB2 are single-stranded RNA-binding domains that recognize 5' splice site-like sequences. Proc Natl Acad Sci U S A. 106(14): 5581-5586.	Two close motifs make binding significantly stronger.	Synthesized oligos. Sequences of 25nt random for SELEX.		SELEX of 25nt random with recombinant protein. EMSA, Fluorescence Anisotropy, NMR Spectroscopy.
ZRANB2	CGGUCU	-2	Gene Name and Synonymous: ZRANB2, zinc finger, RAN-binding domain containing 2, ZIS, ZIS1, ZIS2, ZNF265, FLJ41119, DKFZp686J183, DKFZp686N09117. ZRANB2 (ZNF265) is an SR-like protein that induce exclusion of EX2 and EX3 from the Tra2beta1 pre-mRNA in HEK293 cell (PMID: 11448987).	19304800	Loughlin FE, Mansfield RE, Vaz PM, McGrath AP, Setiyaputra S, Gamsjaeger R, Chen ES, Morris BJ, Guss JM, Mackay JP. (2009) The zinc fingers of the SR-like protein ZRANB2 are single-stranded RNA-binding domains that recognize 5' splice site-like sequences. Proc Natl Acad Sci U S A. 106(14): 5581-5586.	Two close motifs make binding significantly stronger.	Synthesized oligos. Sequences of 25nt random for SELEX.		SELEX of 25nt random with recombinant protein. EMSA, Fluorescence Anisotropy, NMR Spectroscopy.
ZRANB2	AGGUCU	-1	Gene Name and Synonymous: ZRANB2, zinc finger, RAN-binding domain containing 2, ZIS, ZIS1, ZIS2, ZNF265, FLJ41119, DKFZp686J183, DKFZp686N09117. ZRANB2 (ZNF265) is an SR-like protein that induce exclusion of EX2 and EX3 from the Tra2beta1 pre-mRNA in HEK293 cell (PMID: 11448987).	19304800	Loughlin FE, Mansfield RE, Vaz PM, McGrath AP, Setiyaputra S, Gamsjaeger R, Chen ES, Morris BJ, Guss JM, Mackay JP. (2009) The zinc fingers of the SR-like protein ZRANB2 are single-stranded RNA-binding domains that recognize 5' splice site-like sequences. Proc Natl Acad Sci U S A. 106(14): 5581-5586.	Two close motifs make binding significantly stronger.	Synthesized oligos. Sequences of 25nt random for SELEX.		SELEX of 25nt random with recombinant protein. EMSA, Fluorescence Anisotropy, NMR Spectroscopy.
ZRANB2	CGGUAU	-1	Gene Name and Synonymous: ZRANB2, zinc finger, RAN-binding domain containing 2, ZIS, ZIS1, ZIS2, ZNF265, FLJ41119, DKFZp686J183, DKFZp686N09117. ZRANB2 (ZNF265) is an SR-like protein that induce exclusion of EX2 and EX3 from the Tra2beta1 pre-mRNA in HEK293 cell (PMID: 11448987).	19304800	Loughlin FE, Mansfield RE, Vaz PM, McGrath AP, Setiyaputra S, Gamsjaeger R, Chen ES, Morris BJ, Guss JM, Mackay JP. (2009) The zinc fingers of the SR-like protein ZRANB2 are single-stranded RNA-binding domains that recognize 5' splice site-like sequences. Proc Natl Acad Sci U S A. 106(14): 5581-5586.	Two close motifs make binding significantly stronger.	Synthesized oligos. Sequences of 25nt random for SELEX.		SELEX of 25nt random with recombinant protein. EMSA, Fluorescence Anisotropy, NMR Spectroscopy.
ZRANB2	AGGUAC	-1	Gene Name and Synonymous: ZRANB2, zinc finger, RAN-binding domain containing 2, ZIS, ZIS1, ZIS2, ZNF265, FLJ41119, DKFZp686J183, DKFZp686N09117. ZRANB2 (ZNF265) is an SR-like protein that induce exclusion of EX2 and EX3 from the Tra2beta1 pre-mRNA in HEK293 cell (PMID: 11448987).	19304800	Loughlin FE, Mansfield RE, Vaz PM, McGrath AP, Setiyaputra S, Gamsjaeger R, Chen ES, Morris BJ, Guss JM, Mackay JP. (2009) The zinc fingers of the SR-like protein ZRANB2 are single-stranded RNA-binding domains that recognize 5' splice site-like sequences. Proc Natl Acad Sci U S A. 106(14): 5581-5586.	Two close motifs make binding significantly stronger.	Synthesized oligos. Sequences of 25nt random for SELEX.		SELEX of 25nt random with recombinant protein. EMSA, Fluorescence Anisotropy, NMR Spectroscopy.
ZRANB2	AGGUAU	-1	Gene Name and Synonymous: ZRANB2, zinc finger, RAN-binding domain containing 2, ZIS, ZIS1, ZIS2, ZNF265, FLJ41119, DKFZp686J183, DKFZp686N09117. ZRANB2 (ZNF265) is an SR-like protein that induce exclusion of EX2 and EX3 from the Tra2beta1 pre-mRNA in HEK293 cell (PMID: 11448987).	19304800	Loughlin FE, Mansfield RE, Vaz PM, McGrath AP, Setiyaputra S, Gamsjaeger R, Chen ES, Morris BJ, Guss JM, Mackay JP. (2009) The zinc fingers of the SR-like protein ZRANB2 are single-stranded RNA-binding domains that recognize 5' splice site-like sequences. Proc Natl Acad Sci U S A. 106(14): 5581-5586.	Two close motifs make binding significantly stronger.	Synthesized oligos. Sequences of 25nt random for SELEX.		SELEX of 25nt random with recombinant protein. EMSA, Fluorescence Anisotropy, NMR Spectroscopy.
ZRANB2	AGGUUA	-1	Gene Name and Synonymous: ZRANB2, zinc finger, RAN-binding domain containing 2, ZIS, ZIS1, ZIS2, ZNF265, FLJ41119, DKFZp686J183, DKFZp686N09117. ZRANB2 (ZNF265) is an SR-like protein that induce exclusion of EX2 and EX3 from the Tra2beta1 pre-mRNA in HEK293 cell (PMID: 11448987).	19304800	Loughlin FE, Mansfield RE, Vaz PM, McGrath AP, Setiyaputra S, Gamsjaeger R, Chen ES, Morris BJ, Guss JM, Mackay JP. (2009) The zinc fingers of the SR-like protein ZRANB2 are single-stranded RNA-binding domains that recognize 5' splice site-like sequences. Proc Natl Acad Sci U S A. 106(14): 5581-5586.	Two close motifs make binding significantly stronger.	Synthesized oligos. Sequences of 25nt random for SELEX.		SELEX of 25nt random with recombinant protein. EMSA, Fluorescence Anisotropy, NMR Spectroscopy.
ZRANB2	AGGUUU	-1	Gene Name and Synonymous: ZRANB2, zinc finger, RAN-binding domain containing 2, ZIS, ZIS1, ZIS2, ZNF265, FLJ41119, DKFZp686J183, DKFZp686N09117. ZRANB2 (ZNF265) is an SR-like protein that induce exclusion of EX2 and EX3 from the Tra2beta1 pre-mRNA in HEK293 cell (PMID: 11448987).	19304800	Loughlin FE, Mansfield RE, Vaz PM, McGrath AP, Setiyaputra S, Gamsjaeger R, Chen ES, Morris BJ, Guss JM, Mackay JP. (2009) The zinc fingers of the SR-like protein ZRANB2 are single-stranded RNA-binding domains that recognize 5' splice site-like sequences. Proc Natl Acad Sci U S A. 106(14): 5581-5586.	Two close motifs make binding significantly stronger.	Synthesized oligos. Sequences of 25nt random for SELEX.		SELEX of 25nt random with recombinant protein. EMSA, Fluorescence Anisotropy, NMR Spectroscopy.
ZRANB2	CGGUAG	-1	Gene Name and Synonymous: ZRANB2, zinc finger, RAN-binding domain containing 2, ZIS, ZIS1, ZIS2, ZNF265, FLJ41119, DKFZp686J183, DKFZp686N09117. ZRANB2 (ZNF265) is an SR-like protein that induce exclusion of EX2 and EX3 from the Tra2beta1 pre-mRNA in HEK293 cell (PMID: 11448987).	19304800	Loughlin FE, Mansfield RE, Vaz PM, McGrath AP, Setiyaputra S, Gamsjaeger R, Chen ES, Morris BJ, Guss JM, Mackay JP. (2009) The zinc fingers of the SR-like protein ZRANB2 are single-stranded RNA-binding domains that recognize 5' splice site-like sequences. Proc Natl Acad Sci U S A. 106(14): 5581-5586.	Two close motifs make binding significantly stronger.	Synthesized oligos. Sequences of 25nt random for SELEX.		SELEX of 25nt random with recombinant protein. EMSA, Fluorescence Anisotropy, NMR Spectroscopy.
ZRANB2	GAGGUU	-1	Gene Name and Synonymous: ZRANB2, zinc finger, RAN-binding domain containing 2, ZIS, ZIS1, ZIS2, ZNF265, FLJ41119, DKFZp686J183, DKFZp686N09117. ZRANB2 (ZNF265) is an SR-like protein that induce exclusion of EX2 and EX3 from the Tra2beta1 pre-mRNA in HEK293 cell (PMID: 11448987).	19304800	Loughlin FE, Mansfield RE, Vaz PM, McGrath AP, Setiyaputra S, Gamsjaeger R, Chen ES, Morris BJ, Guss JM, Mackay JP. (2009) The zinc fingers of the SR-like protein ZRANB2 are single-stranded RNA-binding domains that recognize 5' splice site-like sequences. Proc Natl Acad Sci U S A. 106(14): 5581-5586.	Two close motifs make binding significantly stronger.	Synthesized oligos. Sequences of 25nt random for SELEX.		SELEX of 25nt random with recombinant protein. EMSA, Fluorescence Anisotropy, NMR Spectroscopy.
ZRANB2	GGGUAA	-1	Gene Name and Synonymous: ZRANB2, zinc finger, RAN-binding domain containing 2, ZIS, ZIS1, ZIS2, ZNF265, FLJ41119, DKFZp686J183, DKFZp686N09117. ZRANB2 (ZNF265) is an SR-like protein that induce exclusion of EX2 and EX3 from the Tra2beta1 pre-mRNA in HEK293 cell (PMID: 11448987).	19304800	Loughlin FE, Mansfield RE, Vaz PM, McGrath AP, Setiyaputra S, Gamsjaeger R, Chen ES, Morris BJ, Guss JM, Mackay JP. (2009) The zinc fingers of the SR-like protein ZRANB2 are single-stranded RNA-binding domains that recognize 5' splice site-like sequences. Proc Natl Acad Sci U S A. 106(14): 5581-5586.	Two close motifs make binding significantly stronger.	Synthesized oligos. Sequences of 25nt random for SELEX.		SELEX of 25nt random with recombinant protein. EMSA, Fluorescence Anisotropy, NMR Spectroscopy.
ZRANB2	GGGUGA	-1	Gene Name and Synonymous: ZRANB2, zinc finger, RAN-binding domain containing 2, ZIS, ZIS1, ZIS2, ZNF265, FLJ41119, DKFZp686J183, DKFZp686N09117. ZRANB2 (ZNF265) is an SR-like protein that induce exclusion of EX2 and EX3 from the Tra2beta1 pre-mRNA in HEK293 cell (PMID: 11448987).	19304800	Loughlin FE, Mansfield RE, Vaz PM, McGrath AP, Setiyaputra S, Gamsjaeger R, Chen ES, Morris BJ, Guss JM, Mackay JP. (2009) The zinc fingers of the SR-like protein ZRANB2 are single-stranded RNA-binding domains that recognize 5' splice site-like sequences. Proc Natl Acad Sci U S A. 106(14): 5581-5586.	Two close motifs make binding significantly stronger.	Synthesized oligos. Sequences of 25nt random for SELEX.		SELEX of 25nt random with recombinant protein. EMSA, Fluorescence Anisotropy, NMR Spectroscopy.
ZRANB2	AGGGAA	-5	Gene Name and Synonymous: ZRANB2, zinc finger, RAN-binding domain containing 2, ZIS, ZIS1, ZIS2, ZNF265, FLJ41119, DKFZp686J183, DKFZp686N09117. ZRANB2 (ZNF265) is an SR-like protein that induce exclusion of EX2 and EX3 from the Tra2beta1 pre-mRNA in HEK293 cell (PMID: 11448987).	19304800	Loughlin FE, Mansfield RE, Vaz PM, McGrath AP, Setiyaputra S, Gamsjaeger R, Chen ES, Morris BJ, Guss JM, Mackay JP. (2009) The zinc fingers of the SR-like protein ZRANB2 are single-stranded RNA-binding domains that recognize 5' splice site-like sequences. Proc Natl Acad Sci U S A. 106(14): 5581-5586.	Two close motifs make binding significantly stronger.	Synthesized oligos. Sequences of 25nt random for SELEX.		SELEX of 25nt random with recombinant protein. EMSA, Fluorescence Anisotropy, NMR Spectroscopy.
ZRANB2	GGUGGU	-10	Gene Name and Synonymous: ZRANB2, zinc finger, RAN-binding domain containing 2, ZIS, ZIS1, ZIS2, ZNF265, FLJ41119, DKFZp686J183, DKFZp686N09117. ZRANB2 (ZNF265) is an SR-like protein that induce exclusion of EX2 and EX3 from the Tra2beta1 pre-mRNA in HEK293 cell (PMID: 11448987).	22517726	O'Connell MR, Vandevenne M, Nguyen CD, Matthews JM, Gamsjaeger R, Segal DJ, Mackay JP. (2012) Modular Assembly of RanBP2-Type Zinc Finger Domains to Target Single-Stranded RNA. Angew Chem Int Ed Engl. 51(22):5371-5375.		Synthesized sequences		Fluorescence anisotropy titration, isothermal titration calorimetry and HSQC spectroscopy using recombinant protein
ZRANB2	GGUAAAGGU	-10	Gene Name and Synonymous: ZRANB2, zinc finger, RAN-binding domain containing 2, ZIS, ZIS1, ZIS2, ZNF265, FLJ41119, DKFZp686J183, DKFZp686N09117. ZRANB2 (ZNF265) is an SR-like protein that induce exclusion of EX2 and EX3 from the Tra2beta1 pre-mRNA in HEK293 cell (PMID: 11448987).	22517726	O'Connell MR, Vandevenne M, Nguyen CD, Matthews JM, Gamsjaeger R, Segal DJ, Mackay JP. (2012) Modular Assembly of RanBP2-Type Zinc Finger Domains to Target Single-Stranded RNA. Angew Chem Int Ed Engl. 51(22):5371-5375.		Synthesized sequences		Fluorescence anisotropy titration, isothermal titration calorimetry and HSQC spectroscopy using recombinant protein
ZRANB2	GGUGGUGGU	-10	Gene Name and Synonymous: ZRANB2, zinc finger, RAN-binding domain containing 2, ZIS, ZIS1, ZIS2, ZNF265, FLJ41119, DKFZp686J183, DKFZp686N09117. ZRANB2 (ZNF265) is an SR-like protein that induce exclusion of EX2 and EX3 from the Tra2beta1 pre-mRNA in HEK293 cell (PMID: 11448987).	22517726	O'Connell MR, Vandevenne M, Nguyen CD, Matthews JM, Gamsjaeger R, Segal DJ, Mackay JP. (2012) Modular Assembly of RanBP2-Type Zinc Finger Domains to Target Single-Stranded RNA. Angew Chem Int Ed Engl. 51(22):5371-5375.		Synthesized sequences		Fluorescence anisotropy titration, isothermal titration calorimetry and HSQC spectroscopy using recombinant protein